Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0225 ATGGATCCGAAATCTACTGAGTCCCCAACATCAACTACTGTTAATACCTTCGAGACTAAACCTCCAGAAGTACACCCTCAGGCTCCTGCTGCCTCTGGAATGGATAATGTGGCACGTGATGCACCATCTAAGCTATCTCCTACTGGCATAACTTCATGGGCCAAAAGTTTGAAAATTTCTCAACCACAGTCAACTTCACAAGATGGCACGACTGAAAATGCTGGGAAATCAGCTTTTGCACGTTTTACTAGTGGCTTAGGCTTGAATTTATCCCCAAAATCTGCTGCACCTAATGATTCCCCAGATGGAACTTCTAAACCTGCCCAACCCAGTTTTGTGGGATCAATTACAAGAGGGTTGGTCGACTCTTCAAAGAGTGCTGTAAAGGCTGTACAAGTTAAAGCTCGTCATGTTGTCTCCCAGAATAAGCGAAGATACCAGGAAGGTGGATTTGATTTGGATATGACTTATATTACTGAAAATATCATCGCTATGGGTTTCCCTGCTGGTGACATGAGCTCAGGGTTTTTCGGATATGTTGAGGGTTTCTACAGGAACCATATGGAAGAAGTCATTAAGTTCTTTGAAACGCATCACAAGGGAAAGTACAAAGTATATAATCTTTGTTCCGAGAGGCTATATGATGCATCATTATTTGAAGGAAAGGTGGCTTGTTTTCCTTTTGATGACCATAACTGTCCCCCAGTTCAACTGATAATATCCTTTTGCCAAAGTGCTTATTCATGGCTGAAGGATGATATCGAAAATGTAGTGGTTGTGCATTGCAAGGCAGGAATGGCCAGGACAGGCTTGATGATTTCCAGTCTTCTTCTATTTCTGAAGTTTTTTCCAACTGCCGAAGAATCCATTGAATATTACAACCAGAGAAGGTGTTTTGATGGAAAAGGCTTGATTTTACCAAGTCAAATTAGGTATGTCAAATATTTTGAACGTATTTTAACATACTTCAATGGCGAAAATCCTCCTGGCCGCAGGTGTGTGCTTAGAGGGTTTCGTCTCCACAGATGTCCATATTGGATCAGGCCTTCCATTACTGTATCTGACCATAATGGTGTTCTGTTCTCCACTAAAACGCATCAAAGAACCAAGAGTCTCTCGCCAGAAGATTTTTGGTTTACTGCACCAAAGAAGGGGATAATGGTATTCGCCTTACCCGGAGAGCCTGGTCTAGCTGAGTTGTGTGGGGACTTCAAGGTTCATTTCCACGATCGCCAAGGAGACTTCTATTGTTGGCTAAACACAACCATGACTGAAAATCGGAAAATGCTCTACACTAATGATCTTGATGGGTTCGATAAGAGGAAACTGCCTTCCCCTGGATTTCAGGTGGAGGTTGTTCTAGTAGATACGTCGCCCAACGTGGACAATACTACCAAGAAATCAGACGAAAGCTCGGGCTCGAAACCTTCTGCAGTTGATGGGAGTGAAGTTTCTGAGAACCAAAACAGAAAATCAGGAACTAGTGATAAAGATGATTTTTTTTCTGATAGTGAATCAGAAGGTGGTTCTTCAAAGAGCAAGGAGGCAGCTGCAGGTTCAGGGGCCAAAGAGTCAGCAGTCAAGACGACATCAAAATCTCAAACGAGCACAACTTCATCAGATGATGTTGCGAGTTTATCACACGCCACAAAGCAAGTATCCCTGGGAGATGGTGGAGCTAAACAGACTGCTCCTGCCAGTGACCGAAAAGGCGATGGAGTCGGAAGATCTGATTCCCTGCCAGAAGTTCCAAACTCAGAAAGTGAATTCAAGGCAATGGCTGCTGATGCTTCTGTTTTCACATTTGGCGACGACGAAGACTACGAGAGTGAGTAA 1836 43.46 MDPKSTESPTSTTVNTFETKPPEVHPQAPAASGMDNVARDAPSKLSPTGITSWAKSLKISQPQSTSQDGTTENAGKSAFARFTSGLGLNLSPKSAAPNDSPDGTSKPAQPSFVGSITRGLVDSSKSAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPVQLIISFCQSAYSWLKDDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESIEYYNQRRCFDGKGLILPSQIRYVKYFERILTYFNGENPPGRRCVLRGFRLHRCPYWIRPSITVSDHNGVLFSTKTHQRTKSLSPEDFWFTAPKKGIMVFALPGEPGLAELCGDFKVHFHDRQGDFYCWLNTTMTENRKMLYTNDLDGFDKRKLPSPGFQVEVVLVDTSPNVDNTTKKSDESSGSKPSAVDGSEVSENQNRKSGTSDKDDFFSDSESEGGSSKSKEAAAGSGAKESAVKTTSKSQTSTTSSDDVASLSHATKQVSLGDGGAKQTAPASDRKGDGVGRSDSLPEVPNSESEFKAMAADASVFTFGDDEDYESE 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2464348 2469094 - Lag0014597.1 Lac12g0225 588822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0225 611 ProSiteProfiles Phosphatase tensin-type domain profile. 144 323 IPR029023 -
Lac12g0225 611 MobiDBLite consensus disorder prediction 456 489 - -
Lac12g0225 611 ProSitePatterns Tyrosine specific protein phosphatases active site. 260 270 IPR016130 GO:0016311(InterPro)
Lac12g0225 611 MobiDBLite consensus disorder prediction 1 73 - -
Lac12g0225 611 MobiDBLite consensus disorder prediction 1 20 - -
Lac12g0225 611 MobiDBLite consensus disorder prediction 490 510 - -
Lac12g0225 611 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 129 326 - -
Lac12g0225 611 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 258 297 IPR000387 GO:0016311(InterPro)
Lac12g0225 611 MobiDBLite consensus disorder prediction 454 611 - -
Lac12g0225 611 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 157 324 IPR029021 -
Lac12g0225 611 CDD PTP_PTEN 154 319 IPR045101 GO:0016791(InterPro)
Lac12g0225 611 Gene3D - 333 458 - -
Lac12g0225 611 MobiDBLite consensus disorder prediction 45 73 - -
Lac12g0225 611 MobiDBLite consensus disorder prediction 90 114 - -
Lac12g0225 611 ProSiteProfiles C2 tensin-type domain profile. 330 457 IPR014020 -
Lac12g0225 611 SMART PTEN_C2_2 328 456 IPR014020 -
Lac12g0225 611 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 348 454 IPR035892 -
Lac12g0225 611 Pfam PTEN2, C2 domain 330 457 - -
Lac12g0225 611 Gene3D Protein tyrosine phosphatase superfamily 129 326 IPR029021 -
Lac12g0225 611 MobiDBLite consensus disorder prediction 524 552 - -
Lac12g0225 611 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 131 548 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Lac12g0225 611 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 225 278 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0225 Lac-Chr12:2464348 Lac1g2600 Lac-Chr1:47343274 8.00E-202 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0225 K01110 - csv:101222304 1098.57