Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0225 ATGGATCCGAAATCTACTGAGTCCCCAACATCAACTACTGTTAATACCTTCGAGACTAAACCTCCAGAAGTACACCCTCAGGCTCCTGCTGCCTCTGGAATGGATAATGTGGCACGTGATGCACCATCTAAGCTATCTCCTACTGGCATAACTTCATGGGCCAAAAGTTTGAAAATTTCTCAACCACAGTCAACTTCACAAGATGGCACGACTGAAAATGCTGGGAAATCAGCTTTTGCACGTTTTACTAGTGGCTTAGGCTTGAATTTATCCCCAAAATCTGCTGCACCTAATGATTCCCCAGATGGAACTTCTAAACCTGCCCAACCCAGTTTTGTGGGATCAATTACAAGAGGGTTGGTCGACTCTTCAAAGAGTGCTGTAAAGGCTGTACAAGTTAAAGCTCGTCATGTTGTCTCCCAGAATAAGCGAAGATACCAGGAAGGTGGATTTGATTTGGATATGACTTATATTACTGAAAATATCATCGCTATGGGTTTCCCTGCTGGTGACATGAGCTCAGGGTTTTTCGGATATGTTGAGGGTTTCTACAGGAACCATATGGAAGAAGTCATTAAGTTCTTTGAAACGCATCACAAGGGAAAGTACAAAGTATATAATCTTTGTTCCGAGAGGCTATATGATGCATCATTATTTGAAGGAAAGGTGGCTTGTTTTCCTTTTGATGACCATAACTGTCCCCCAGTTCAACTGATAATATCCTTTTGCCAAAGTGCTTATTCATGGCTGAAGGATGATATCGAAAATGTAGTGGTTGTGCATTGCAAGGCAGGAATGGCCAGGACAGGCTTGATGATTTCCAGTCTTCTTCTATTTCTGAAGTTTTTTCCAACTGCCGAAGAATCCATTGAATATTACAACCAGAGAAGGTGTTTTGATGGAAAAGGCTTGATTTTACCAAGTCAAATTAGGTATGTCAAATATTTTGAACGTATTTTAACATACTTCAATGGCGAAAATCCTCCTGGCCGCAGGTGTGTGCTTAGAGGGTTTCGTCTCCACAGATGTCCATATTGGATCAGGCCTTCCATTACTGTATCTGACCATAATGGTGTTCTGTTCTCCACTAAAACGCATCAAAGAACCAAGAGTCTCTCGCCAGAAGATTTTTGGTTTACTGCACCAAAGAAGGGGATAATGGTATTCGCCTTACCCGGAGAGCCTGGTCTAGCTGAGTTGTGTGGGGACTTCAAGGTTCATTTCCACGATCGCCAAGGAGACTTCTATTGTTGGCTAAACACAACCATGACTGAAAATCGGAAAATGCTCTACACTAATGATCTTGATGGGTTCGATAAGAGGAAACTGCCTTCCCCTGGATTTCAGGTGGAGGTTGTTCTAGTAGATACGTCGCCCAACGTGGACAATACTACCAAGAAATCAGACGAAAGCTCGGGCTCGAAACCTTCTGCAGTTGATGGGAGTGAAGTTTCTGAGAACCAAAACAGAAAATCAGGAACTAGTGATAAAGATGATTTTTTTTCTGATAGTGAATCAGAAGGTGGTTCTTCAAAGAGCAAGGAGGCAGCTGCAGGTTCAGGGGCCAAAGAGTCAGCAGTCAAGACGACATCAAAATCTCAAACGAGCACAACTTCATCAGATGATGTTGCGAGTTTATCACACGCCACAAAGCAAGTATCCCTGGGAGATGGTGGAGCTAAACAGACTGCTCCTGCCAGTGACCGAAAAGGCGATGGAGTCGGAAGATCTGATTCCCTGCCAGAAGTTCCAAACTCAGAAAGTGAATTCAAGGCAATGGCTGCTGATGCTTCTGTTTTCACATTTGGCGACGACGAAGACTACGAGAGTGAGTAA 1836 43.46 MDPKSTESPTSTTVNTFETKPPEVHPQAPAASGMDNVARDAPSKLSPTGITSWAKSLKISQPQSTSQDGTTENAGKSAFARFTSGLGLNLSPKSAAPNDSPDGTSKPAQPSFVGSITRGLVDSSKSAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPVQLIISFCQSAYSWLKDDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESIEYYNQRRCFDGKGLILPSQIRYVKYFERILTYFNGENPPGRRCVLRGFRLHRCPYWIRPSITVSDHNGVLFSTKTHQRTKSLSPEDFWFTAPKKGIMVFALPGEPGLAELCGDFKVHFHDRQGDFYCWLNTTMTENRKMLYTNDLDGFDKRKLPSPGFQVEVVLVDTSPNVDNTTKKSDESSGSKPSAVDGSEVSENQNRKSGTSDKDDFFSDSESEGGSSKSKEAAAGSGAKESAVKTTSKSQTSTTSSDDVASLSHATKQVSLGDGGAKQTAPASDRKGDGVGRSDSLPEVPNSESEFKAMAADASVFTFGDDEDYESE 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2464348 2469094 - Lag0014597.1 Lac12g0225 588822

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0225 611 ProSiteProfiles Phosphatase tensin-type domain profile. 144 323 IPR029023 -
Lac12g0225 611 MobiDBLite consensus disorder prediction 456 489 - -
Lac12g0225 611 ProSitePatterns Tyrosine specific protein phosphatases active site. 260 270 IPR016130 GO:0016311(InterPro)
Lac12g0225 611 MobiDBLite consensus disorder prediction 1 73 - -
Lac12g0225 611 MobiDBLite consensus disorder prediction 1 20 - -
Lac12g0225 611 MobiDBLite consensus disorder prediction 490 510 - -
Lac12g0225 611 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 129 326 - -
Lac12g0225 611 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 258 297 IPR000387 GO:0016311(InterPro)
Lac12g0225 611 MobiDBLite consensus disorder prediction 454 611 - -
Lac12g0225 611 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 157 324 IPR029021 -
Lac12g0225 611 CDD PTP_PTEN 154 319 IPR045101 GO:0016791(InterPro)
Lac12g0225 611 Gene3D - 333 458 - -
Lac12g0225 611 MobiDBLite consensus disorder prediction 45 73 - -
Lac12g0225 611 MobiDBLite consensus disorder prediction 90 114 - -
Lac12g0225 611 ProSiteProfiles C2 tensin-type domain profile. 330 457 IPR014020 -
Lac12g0225 611 SMART PTEN_C2_2 328 456 IPR014020 -
Lac12g0225 611 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 348 454 IPR035892 -
Lac12g0225 611 Pfam PTEN2, C2 domain 330 457 - -
Lac12g0225 611 Gene3D Protein tyrosine phosphatase superfamily 129 326 IPR029021 -
Lac12g0225 611 MobiDBLite consensus disorder prediction 524 552 - -
Lac12g0225 611 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 131 548 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Lac12g0225 611 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 225 278 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0225 K01110 - - csv:101222304 1098.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0225 Lac-Chr12:2464348 Lac1g2600 Lac-Chr1:47343274 8.00E-202 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac1g2600 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 60.9 7.2e-190 661.4
Lac12g0225 . 6 611 Protein tyrosine phosphatase (PTP) family AT3G50110 55.4 6.8e-180 628.2
Lac8g0876 . 1 406 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 6.2e-158 554.7
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1169.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT5G04540 66.2 0.0e+00 1116.3
Lac3g0209 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 51.7 0.0e+00 1085.5
Lac2g2055 . 84 237 Protein tyrosine phosphatase (PTP) family AT1G71860 56.8 4.2e-43 172.9
Lac3g0027 . 1 760 Protein tyrosine phosphatase (PTP) family AT5G23720 66.4 8.1e-275 944.1
Lac12g2326 . 33 170 Protein tyrosine phosphatase (PTP) family AT3G06110 59.4 9.3e-44 174.1
Lac12g0829 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.1 5.1e-72 268.1
Lac13g0651 . 140 324 Protein tyrosine phosphatase (PTP) family AT3G52180 75.7 8.6e-82 301.2
Lac13g1219 . 33 282 Protein tyrosine phosphatase (PTP) family AT3G10940 71.5 4.5e-107 385.2
Lac8g0287 . 29 477 Protein tyrosine phosphatase (PTP) family AT3G01510 73.3 1.6e-204 709.5
Lac9g2220 . 9 212 Protein tyrosine phosphatase (PTP) family AT2G32960 59.8 1.2e-74 277.3
Lac12g0819 . 33 241 Protein tyrosine phosphatase (PTP) family AT2G32960 63.4 6.6e-73 271.6
Lac5g0369 . 1 332 Protein tyrosine phosphatase (PTP) family AT2G35680 54.4 7.7e-98 354.8
Lac6g3049 . 12 263 Protein tyrosine phosphatase (PTP) family AT2G35680 54.7 2.5e-80 296.6
Lac6g3049 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.1e-45 180.6
Lac9g2220 . 18 212 Protein tyrosine phosphatase (PTP) family AT4G03960 70.8 4.4e-77 285.0
Lac12g0819 . 42 241 Protein tyrosine phosphatase (PTP) family AT4G03960 64.5 1.1e-70 263.8
Lac3g1690 . 120 291 Protein tyrosine phosphatase (PTP) family AT4G03960 57.0 1.3e-55 213.8
Lac3g1690 . 115 304 Protein tyrosine phosphatase (PTP) family AT3G02800 70.0 6.3e-79 291.2
Lac9g2220 . 34 206 Protein tyrosine phosphatase (PTP) family AT3G02800 60.1 9.9e-56 214.2
Lac12g0819 . 40 230 Protein tyrosine phosphatase (PTP) family AT3G02800 50.3 5.6e-51 198.4
Lac13g0933 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 1.4e-62 238.8
Lac8g0876 . 1 406 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 6.2e-158 554.7
Lac12g0225 . 32 611 Protein tyrosine phosphatase (PTP) family AT3G19420 65.7 5.1e-217 751.5
Lac1g2600 . 31 606 Protein tyrosine phosphatase (PTP) family AT3G19420 62.7 1.6e-202 703.4
Lac1g2600 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 60.9 7.2e-190 661.4
Lac12g0225 . 6 611 Protein tyrosine phosphatase (PTP) family AT3G50110 55.4 6.8e-180 628.2
Lac3g0209 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 51.7 0.0e+00 1085.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1169.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT5G04540 66.2 0.0e+00 1116.3
Lac9g2686 . 17 246 Protein tyrosine phosphatase (PTP) family AT3G44620 56.3 3.7e-71 265.8
Lac5g0274 . 23 309 Protein tyrosine phosphatase (PTP) family AT2G35320 63.8 3.7e-107 385.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001006 4 2 3 3 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 11 6 2 83