Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac12g0230 | ATGGACAACTCCTTGGCGGCAATGGATGATTCTCCTACCAATCCCGTCAAGGCCTTGGCTACCTTTCTAATTCGCCGCCACTCCGATCAGCTCCATTCCATTGCTCATTGCCCTGATCCAAAGCTCCATTATCCTTTATTCGTGGAATTCGCAGAGCTGATGGACGACGACCCACCTCTTGCTTGTCTTGTCTTCTCCCATCCGACCGAGTATTTGCGTATTTTTGACGATGCAGCTGTTTGGGCTCACAAGATCATTTTGGGTGATTCGAAAGGTTGCATGAATGGAATTAGGAAAGATTTCATCCATGTTCGTATTAATGTCACTGGCTCCCCGCTGGAATGGCCTGAGACTTTTCCAAGTATTGGGTCTGTCAGAGTGAAGCATCGTGGAGTGCTTCTCACACTTAAGGGGACGGTAATCAGGTCTGGGGCAATTAAGATGTATGAGGGGGAGAGGTGGTACATGTGCCGGAAATGCAAGCACAAGTTCCCAGTTTATCCAGAGCTAGAAACTAGAAACTCAATACAGTTACCATCATTTTGCCCCTCTCAGAGGGCAAAACTATGTGAAGGTAAAAGTTTTGAGTGCTTGGAAGGTTCTGTAGTACGCCATGATTACCAAGAGATAAAAATCCAGGAGAGTACACAAGTATTGGGTGTGGGGTCCATTCCTCGTGCCATTCTAGTCATTCTCAAGGATGACCTTGTTGACCTTGTTAAAGCTGGAGATGATGTTATTGTTACAGGAGTATTAAGTGCGAAGTGGTCTCCAGACCTCAAAGATGTACGGTGTGACCTTGATCCTATGCTAATTGCTAATCATGTGAGAAGAACCAATGAACTAAAGACCGAGGTTGACATCCCTGATGACATAATTATGAAATTTAAGCAGTTCTGGTCAGATTTCAAAGACACTCCTTTAAAAGGAAGGAATGCAATTCTAAGAGGTATATGCCCTCAAGTGTTTGGACTTTTTACTGTAAAACTTGCAGTGGCTTTAACACTCATTGGAGGTGTACAACATGTGGATATATCTGGTACTAAAGTTCGAGGAGAATCTCATCTACTGTTGGTTGGTGATCCTGGTACTGGAAAGTCACAGTTCTTGAAATTTGCTGCCAAATTGAGCAACCGAGCTGTTATTACCACTGGATTAGGAAGCACTAGTGCCGGACTAACTGTTGCTGCTGTCAAGGATGGAGGGGAATGGATGCTGGAAGCTGGGGCACTTGTACTTGCAGATGGAGGACTTTGTTGCATAGATGAAGTGGACAGCATGAGAGAACATGACAGAGCCACGATCCATGAAGCAATGGAGCAACAAACTATAAGTGTTGCAAAGGCTGGTCTTGTAACAACTCTTAGTACTAGAACGATAGTATTTGGTGCAACAAATCCTAAAGGACACTACGACCCTGAACAACCTCTATCTGTCAATACAACACTCTCTGGTCCTTTATTGAGCAGATTTGATATCGTCCTTGTGCTTTTAGATACAAAGAATCCCGAATGGGATGCGGTTGTTTCATCTCATATTCTCTCTGAGTGCGATCAAGAGAAGGGAAAGCGTAACAATGATCTTTCAAGTAACTGGCCACTTACTATGCTTCGAAGATACATTCAATTCGTGAAAGGATACTTCAGACCAGTCCTGACGAAGGAGGCTGAGAAAATTATTTCAAACTATTATCAACTTCAAAGAAGATCAGCAATGGATAATGCAGCCAGGACAACGGTACGCATGCTTGAAAGTTTGATACGCCTAGCACAAGCACATGCTCGGCTCATGTTTAGAAATGAGGTTACCCGGCTTGATGCCATTACAGCTATTTTGTGCGTCGAATCATCCATGACGACCTCAGCTCTTGTGGATAGTGTCGGGAATGCCTTGCACTCCAATTTTACCGAGAACCCAGATGAGGAATATGCAAAACAAGAAATTTTGATCCTCGAGAAGCTTAAGTCGATGGACGACGTTTCTGACATTGGCAGTTGA | 1998 | 43.99 | MDNSLAAMDDSPTNPVKALATFLIRRHSDQLHSIAHCPDPKLHYPLFVEFAELMDDDPPLACLVFSHPTEYLRIFDDAAVWAHKIILGDSKGCMNGIRKDFIHVRINVTGSPLEWPETFPSIGSVRVKHRGVLLTLKGTVIRSGAIKMYEGERWYMCRKCKHKFPVYPELETRNSIQLPSFCPSQRAKLCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRAILVILKDDLVDLVKAGDDVIVTGVLSAKWSPDLKDVRCDLDPMLIANHVRRTNELKTEVDIPDDIIMKFKQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRAVITTGLGSTSAGLTVAAVKDGGEWMLEAGALVLADGGLCCIDEVDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIVFGATNPKGHYDPEQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILSECDQEKGKRNNDLSSNWPLTMLRRYIQFVKGYFRPVLTKEAEKIISNYYQLQRRSAMDNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCVESSMTTSALVDSVGNALHSNFTENPDEEYAKQEILILEKLKSMDDVSDIGS | 665 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 2539126 | 2568641 | - | Lag0014602.1 | Lac12g0230 | 588827 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac12g0230 | 665 | SUPERFAMILY | Nucleic acid-binding proteins | 43 | 261 | IPR012340 | - | |
| Lac12g0230 | 665 | FunFam | Probable DNA helicase MCM9 | 288 | 622 | - | - | |
| Lac12g0230 | 665 | CDD | MCM9 | 313 | 617 | - | - | |
| Lac12g0230 | 665 | Gene3D | - | 149 | 205 | - | - | |
| Lac12g0230 | 665 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 409 | 423 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lac12g0230 | 665 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 487 | 495 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lac12g0230 | 665 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 351 | 366 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lac12g0230 | 665 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 437 | 450 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lac12g0230 | 665 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 460 | 472 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lac12g0230 | 665 | SMART | mcm | 118 | 619 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lac12g0230 | 665 | Pfam | MCM OB domain | 124 | 254 | IPR033762 | - | |
| Lac12g0230 | 665 | SMART | AAA_5 | 352 | 501 | IPR003593 | GO:0016887(InterPro) | |
| Lac12g0230 | 665 | Pfam | MCM AAA-lid domain | 536 | 617 | IPR041562 | - | |
| Lac12g0230 | 665 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 15 | 647 | IPR031327 | GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER) | |
| Lac12g0230 | 665 | ProSiteProfiles | MCM family domain profile. | 310 | 513 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lac12g0230 | 665 | Pfam | MCM P-loop domain | 312 | 515 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Lac12g0230 | 665 | Gene3D | - | 124 | 254 | IPR012340 | - | |
| Lac12g0230 | 665 | Gene3D | - | 291 | 623 | IPR027417 | - | |
| Lac12g0230 | 665 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 320 | 622 | IPR027417 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac12g0230 | Lac-Chr12:2539126 | Lac6g2877 | Lac-Chr6:46398013 | 1.70E-64 | dispersed | |
| Lac12g0230 | Lac-Chr12:2539126 | Lac7g1551 | Lac-Chr7:17284273 | 3.90E-69 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac12g0230 | K10738 | - | csv:101205171 | 1217.6 |