Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0246 ATGGCTAACACAGTTCATATTCTTGCAGATATTGATCAGTTATTGATAGAAGCAAAACATCGTTGGTTACGTCCAGCTGAAATTTGTGAAATACTCCGTAACTATCCTAAGTTTCATATTGCTTCAGAGCCTCCAGAGAGACCATCGAGTGGATCGCTTTTTCTTTTTGATCGGAAGGTTCTGAGGTATTTTAGAAAGGATGGACATAAATGGAGGAAGAAGAAAGATGGCAAAACTGTTAAGGAAGCTCATGAGAAGCTGAAGGTTGGCAGCATTGATGTATTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAAAGGCGCAGTTATTGGATGCTTGAAGAGCATTTAATGCACATAGTTTTTGTCCACTACTTGGAAGTTAAGGGCAATAGAACCAATATTGGAGCTGTTATTGAGACTGATGAGGTTTCATCAAGTTCACAGAAGAGCAGTCCTAAGAGTTCTAGCTATTCCAGCAGTCAGAATCAAGCAGCTTCTGAAAATGCAGATTCCCCCAGTCCAACTAGCACTTTGACATCATTTTGTGAAGATGCTGATACTGAAGACACTTACCAAGCAACTTCAAGATTTCACTCGTTTCCCACATCACCAAAAATGGGAAATGGTCTTCTGGTGAATAAAAAAGATGCTGGTCTATCAAATTTTTATTTTCCGAATTCCTCTTCTGATAATGTTGAAGCCTGGTCATCAGTTTCTGCCGTGGAATATGTATCACAAGTTCAGAAAGATGGGCTTGGAGGTAGTGATGGTAGTATTGGTGTAATTGGTTCTCAGAAGACACTCAGCTCTGCTTCGTGGGAAGAGATCTTGCAACAATGTACAACTGGATTTCAAACTGTACCTTCTCATGTTTTAACCTCTTCGATTGAACCTCTATCTTCTGGAATTGTCCTTGGACAAGAGAATTCAATTCCTGGCAAGCCTTTAGCCAGTAATAGTGCTATTAAAGAGGACTTTGGGAGCTCTCTGACAATGACATCAAACTGGCAGGTTCCTTTTGAAGACAATACTTTGTCCTTTTCAAAACGGCACGTTGACCAGTTTCCAGATTTGTATTCAGTTTATGACATAGATAGCAGGTTAAATGAGCAGAAATCTCATAGTGCACCTTTTGGAAGTGGACATGAGATGTTTCGTGCTCATTCTGGCCTAGAGAATGAGGAGATTTTGTCAAACAACCTTGAATTCCAGTTCAAAGAAGGAGAATCGTATTCTGCAATGAGGTTGAGTTCTGAAAATGATATGTCTAAAGAAGGTACCATCAGCTATTCTTTGGCTTTGAAACAATCATTAATAGATGGGGAGGAGAGTTTGAAGAAAGTCGACAGCTTCTCACGGTGGGTATCTAGAGAGCTTGTGGATGTTGATGATTTGCACATGCATCCATCATCTGGCTTGTCTTGGAGTACTGTAGAATGCGGTGATATGGTGGATGATTCATCATTAAGCCCTTCTCTCTCTGAAGACCAGCTTTTCAGTATAATAGACTTTTCTCCAAAGTGGACACTTGCAGATTTTGAAACTGAGGTTGTGATTATAGGAAAGTTTCTGGGGAAGAATCATGGCACCAAATGTTACTGGTCATGTATGTTTGGAGAAGTCGAGGTTCCTGCAGAAGTTTTGGCTGATGGGATCCTGTGCTGTCACGCACCCCCACATAGTGTTGGGCAAGTCCCCTTTTATGTTACATGTTCCAACAGATTAGCTTGCAGTGAGGTGCGTGAATTTGATTACTTGGCAGGCTCTGCTCAAGATGTAGATGTTACCGATGTATATAATGCAGGTGCTACAGAAGAATTACATATGCATTTGCGATTTGAGAGGTTACTGTCCCTTAGATCTTCTGATCCTCCAAATAACCTCTCTGAAGGTGCCTTGGAGAAACGGAACTTAATCAGAAAGCTTATCTCAATAAAAGAAGAAGAAGATTGTTATGGGGAAGAGCCAAATTCTCAGAATGATCAAATTCAGCATCAAAGCAAGGAGTCTCTTTTTGTAAAGCTGATGAAAGAAAAGCTGTACTCATGGCTTATCCGTAAAGTAATTGAAGATGGCAAAGGTCCTAATATATTGGATGACAAGGGGCAGGGGGTAATTCATTTAGCAGCAGCCCTTGGTTATGATTGGGCAATCAGACCGATTGTAGCTGCAGGAGTGAATATAAACTTTCGAGACGTCAATGGATGGACTGCTGTTCATTGGGCAGCATTCTATGGCAGGGAGTCGACAGTTGGAAACCTTGTCGCAACTTTTGGTGCTGCTCCTGGATTGCCGTCAGATCCATCTCCAGGAAATCCTTTGGGCATAATGCCTGCAGAACTCGCATCTATTAATGGACACAAAGGAATCTCTGGTTTTCTAGCGGAGTCATCATTGACCAGCTATGTCTCATCTGTATCAATGAAAGATACTGAAGATGATGGTGTGCTAGATGTTTCAAAAAAGAAAGCTGTATATACTGTTTCTGAACGAAGGGCAACACCAATAGATGATGGTTTTATGCCCGGTGATTTATCCTTGAAGGATTCATTGACTGCTGTCTGCAATGCTACTCAAGCTGCTGACCGTATACATCTGATGTTTAGAATGCAGTCATTTCAGAGGAAAAAATTATCAGAGTGTCATTCTGATGAATTTGGATCCTCAGATGATAGTGCTATTTCATTTGTCACTGCCAGGGGACGAAAGTCCGGACTAAGTAACAGCCCGGCCCATGCTGCTGCAGTTCACATACAGAAAAAGTTCCGGGGTTGGAGAATGAGAAAAGAATTCTTGCTAATACGTCAAAGAATAGTGAAAATTCAGGCCCATGTGAGAGGACACCAGGTGAGGAAGCAATATAAAAAGATCGTCTGGTCGGTAGGAATATTAGACAAGATTATTTTGAGATGGAGACGGAAGGGGAGTGGTTTGCGAGGCTTCCGACCAGATGCAGTTGCCAAGGATCCACCCTCCCTGATGGAACCACCTAAAGCTAAAGAGGATGATTATGATTTTCTGAAGGAAGGAAGGAGGCAGACTGAGGAGAGATTTCAAAAAGCACTTACAAGAGTCAAGTCCATGGCTCAGTATCCTGAGGGACGAGACCAATATCGTAGGCTGCTTACTGTGGTTCAAAAGTGCCGAGAAACCAAGGTGAGTAATATGGCTATTACTACTACTTCAGAAGAGATAATAGAAGGCGATGACATGATTGATATCGACTCGCTACTGGATGATGATGCTTTGATGTCTATGACATTTGATTGA 3282 41.68 MANTVHILADIDQLLIEAKHRWLRPAEICEILRNYPKFHIASEPPERPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNIGAVIETDEVSSSSQKSSPKSSSYSSSQNQAASENADSPSPTSTLTSFCEDADTEDTYQATSRFHSFPTSPKMGNGLLVNKKDAGLSNFYFPNSSSDNVEAWSSVSAVEYVSQVQKDGLGGSDGSIGVIGSQKTLSSASWEEILQQCTTGFQTVPSHVLTSSIEPLSSGIVLGQENSIPGKPLASNSAIKEDFGSSLTMTSNWQVPFEDNTLSFSKRHVDQFPDLYSVYDIDSRLNEQKSHSAPFGSGHEMFRAHSGLENEEILSNNLEFQFKEGESYSAMRLSSENDMSKEGTISYSLALKQSLIDGEESLKKVDSFSRWVSRELVDVDDLHMHPSSGLSWSTVECGDMVDDSSLSPSLSEDQLFSIIDFSPKWTLADFETEVVIIGKFLGKNHGTKCYWSCMFGEVEVPAEVLADGILCCHAPPHSVGQVPFYVTCSNRLACSEVREFDYLAGSAQDVDVTDVYNAGATEELHMHLRFERLLSLRSSDPPNNLSEGALEKRNLIRKLISIKEEEDCYGEEPNSQNDQIQHQSKESLFVKLMKEKLYSWLIRKVIEDGKGPNILDDKGQGVIHLAAALGYDWAIRPIVAAGVNINFRDVNGWTAVHWAAFYGRESTVGNLVATFGAAPGLPSDPSPGNPLGIMPAELASINGHKGISGFLAESSLTSYVSSVSMKDTEDDGVLDVSKKKAVYTVSERRATPIDDGFMPGDLSLKDSLTAVCNATQAADRIHLMFRMQSFQRKKLSECHSDEFGSSDDSAISFVTARGRKSGLSNSPAHAAAVHIQKKFRGWRMRKEFLLIRQRIVKIQAHVRGHQVRKQYKKIVWSVGILDKIILRWRRKGSGLRGFRPDAVAKDPPSLMEPPKAKEDDYDFLKEGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKVSNMAITTTSEEIIEGDDMIDIDSLLDDDALMSMTFD 1093
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2693424 2708065 - Lag0014618.1 Lac12g0246 588843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0246 1093 MobiDBLite consensus disorder prediction 144 185 - -
Lac12g0246 1093 ProSiteProfiles IQ motif profile. 938 962 - -
Lac12g0246 1093 SUPERFAMILY Ankyrin repeat 687 800 IPR036770 -
Lac12g0246 1093 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 10 1056 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Lac12g0246 1093 SMART CG_1_2 14 132 IPR005559 GO:0003677(InterPro)
Lac12g0246 1093 Gene3D Immunoglobulins 498 593 IPR013783 -
Lac12g0246 1093 SUPERFAMILY E set domains 505 589 IPR014756 -
Lac12g0246 1093 Pfam IPT/TIG domain 505 577 IPR002909 -
Lac12g0246 1093 Pfam CG-1 domain 17 130 IPR005559 GO:0003677(InterPro)
Lac12g0246 1093 FunFam Calmodulin-binding transcription activator 2 498 593 - -
Lac12g0246 1093 SMART iq_5 914 936 IPR000048 GO:0005515(InterPro)
Lac12g0246 1093 SMART iq_5 937 959 IPR000048 GO:0005515(InterPro)
Lac12g0246 1093 Pfam IQ calmodulin-binding motif 916 935 IPR000048 GO:0005515(InterPro)
Lac12g0246 1093 Pfam IQ calmodulin-binding motif 940 959 IPR000048 GO:0005515(InterPro)
Lac12g0246 1093 FunFam Calmodulin-binding transcription activator 2 914 962 - -
Lac12g0246 1093 Gene3D - 915 962 - -
Lac12g0246 1093 Gene3D - 638 802 IPR036770 -
Lac12g0246 1093 ProSiteProfiles IQ motif profile. 915 944 - -
Lac12g0246 1093 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 915 965 IPR027417 -
Lac12g0246 1093 ProSiteProfiles CG-1 DNA-binding domain profile. 11 137 IPR005559 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0246 K21596 - - csv:101203707 1776.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0246 Lac-Chr12:2693424 Lac4g1835 Lac-Chr4:37508664 6.80E-111 dispersed
Lac12g0246 Lac-Chr12:2693424 Lac5g1940 Lac-Chr5:37727040 2.50E-137 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac12g0246 . 10 1093 CAMTA Transcription Factor Family AT5G64220 53.6 4.8e-271 931.8
Lac5g1941 . 3 87 CAMTA Transcription Factor Family AT5G64220 80.0 3.1e-36 151.8
Lac4g1835 . 15 944 CAMTA Transcription Factor Family AT1G67310 52.8 2.7e-255 879.4
Lac11g0922 . 34 875 CAMTA Transcription Factor Family AT3G16940 52.7 5.6e-243 838.2
Lac12g0246 . 10 1093 CAMTA Transcription Factor Family AT5G64220 53.6 4.8e-271 931.8
Lac5g1941 . 3 87 CAMTA Transcription Factor Family AT5G64220 80.0 3.1e-36 151.8
Lac4g1835 . 15 944 CAMTA Transcription Factor Family AT1G67310 52.8 2.7e-255 879.4
Lac11g0922 . 34 875 CAMTA Transcription Factor Family AT3G16940 52.7 5.6e-243 838.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006263 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 0 4 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23010 PF03859 CG-1 2.90E-50 No_clan Lac TF