Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0246 ATGGCTAACACAGTTCATATTCTTGCAGATATTGATCAGTTATTGATAGAAGCAAAACATCGTTGGTTACGTCCAGCTGAAATTTGTGAAATACTCCGTAACTATCCTAAGTTTCATATTGCTTCAGAGCCTCCAGAGAGACCATCGAGTGGATCGCTTTTTCTTTTTGATCGGAAGGTTCTGAGGTATTTTAGAAAGGATGGACATAAATGGAGGAAGAAGAAAGATGGCAAAACTGTTAAGGAAGCTCATGAGAAGCTGAAGGTTGGCAGCATTGATGTATTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAAAGGCGCAGTTATTGGATGCTTGAAGAGCATTTAATGCACATAGTTTTTGTCCACTACTTGGAAGTTAAGGGCAATAGAACCAATATTGGAGCTGTTATTGAGACTGATGAGGTTTCATCAAGTTCACAGAAGAGCAGTCCTAAGAGTTCTAGCTATTCCAGCAGTCAGAATCAAGCAGCTTCTGAAAATGCAGATTCCCCCAGTCCAACTAGCACTTTGACATCATTTTGTGAAGATGCTGATACTGAAGACACTTACCAAGCAACTTCAAGATTTCACTCGTTTCCCACATCACCAAAAATGGGAAATGGTCTTCTGGTGAATAAAAAAGATGCTGGTCTATCAAATTTTTATTTTCCGAATTCCTCTTCTGATAATGTTGAAGCCTGGTCATCAGTTTCTGCCGTGGAATATGTATCACAAGTTCAGAAAGATGGGCTTGGAGGTAGTGATGGTAGTATTGGTGTAATTGGTTCTCAGAAGACACTCAGCTCTGCTTCGTGGGAAGAGATCTTGCAACAATGTACAACTGGATTTCAAACTGTACCTTCTCATGTTTTAACCTCTTCGATTGAACCTCTATCTTCTGGAATTGTCCTTGGACAAGAGAATTCAATTCCTGGCAAGCCTTTAGCCAGTAATAGTGCTATTAAAGAGGACTTTGGGAGCTCTCTGACAATGACATCAAACTGGCAGGTTCCTTTTGAAGACAATACTTTGTCCTTTTCAAAACGGCACGTTGACCAGTTTCCAGATTTGTATTCAGTTTATGACATAGATAGCAGGTTAAATGAGCAGAAATCTCATAGTGCACCTTTTGGAAGTGGACATGAGATGTTTCGTGCTCATTCTGGCCTAGAGAATGAGGAGATTTTGTCAAACAACCTTGAATTCCAGTTCAAAGAAGGAGAATCGTATTCTGCAATGAGGTTGAGTTCTGAAAATGATATGTCTAAAGAAGGTACCATCAGCTATTCTTTGGCTTTGAAACAATCATTAATAGATGGGGAGGAGAGTTTGAAGAAAGTCGACAGCTTCTCACGGTGGGTATCTAGAGAGCTTGTGGATGTTGATGATTTGCACATGCATCCATCATCTGGCTTGTCTTGGAGTACTGTAGAATGCGGTGATATGGTGGATGATTCATCATTAAGCCCTTCTCTCTCTGAAGACCAGCTTTTCAGTATAATAGACTTTTCTCCAAAGTGGACACTTGCAGATTTTGAAACTGAGGTTGTGATTATAGGAAAGTTTCTGGGGAAGAATCATGGCACCAAATGTTACTGGTCATGTATGTTTGGAGAAGTCGAGGTTCCTGCAGAAGTTTTGGCTGATGGGATCCTGTGCTGTCACGCACCCCCACATAGTGTTGGGCAAGTCCCCTTTTATGTTACATGTTCCAACAGATTAGCTTGCAGTGAGGTGCGTGAATTTGATTACTTGGCAGGCTCTGCTCAAGATGTAGATGTTACCGATGTATATAATGCAGGTGCTACAGAAGAATTACATATGCATTTGCGATTTGAGAGGTTACTGTCCCTTAGATCTTCTGATCCTCCAAATAACCTCTCTGAAGGTGCCTTGGAGAAACGGAACTTAATCAGAAAGCTTATCTCAATAAAAGAAGAAGAAGATTGTTATGGGGAAGAGCCAAATTCTCAGAATGATCAAATTCAGCATCAAAGCAAGGAGTCTCTTTTTGTAAAGCTGATGAAAGAAAAGCTGTACTCATGGCTTATCCGTAAAGTAATTGAAGATGGCAAAGGTCCTAATATATTGGATGACAAGGGGCAGGGGGTAATTCATTTAGCAGCAGCCCTTGGTTATGATTGGGCAATCAGACCGATTGTAGCTGCAGGAGTGAATATAAACTTTCGAGACGTCAATGGATGGACTGCTGTTCATTGGGCAGCATTCTATGGCAGGGAGTCGACAGTTGGAAACCTTGTCGCAACTTTTGGTGCTGCTCCTGGATTGCCGTCAGATCCATCTCCAGGAAATCCTTTGGGCATAATGCCTGCAGAACTCGCATCTATTAATGGACACAAAGGAATCTCTGGTTTTCTAGCGGAGTCATCATTGACCAGCTATGTCTCATCTGTATCAATGAAAGATACTGAAGATGATGGTGTGCTAGATGTTTCAAAAAAGAAAGCTGTATATACTGTTTCTGAACGAAGGGCAACACCAATAGATGATGGTTTTATGCCCGGTGATTTATCCTTGAAGGATTCATTGACTGCTGTCTGCAATGCTACTCAAGCTGCTGACCGTATACATCTGATGTTTAGAATGCAGTCATTTCAGAGGAAAAAATTATCAGAGTGTCATTCTGATGAATTTGGATCCTCAGATGATAGTGCTATTTCATTTGTCACTGCCAGGGGACGAAAGTCCGGACTAAGTAACAGCCCGGCCCATGCTGCTGCAGTTCACATACAGAAAAAGTTCCGGGGTTGGAGAATGAGAAAAGAATTCTTGCTAATACGTCAAAGAATAGTGAAAATTCAGGCCCATGTGAGAGGACACCAGGTGAGGAAGCAATATAAAAAGATCGTCTGGTCGGTAGGAATATTAGACAAGATTATTTTGAGATGGAGACGGAAGGGGAGTGGTTTGCGAGGCTTCCGACCAGATGCAGTTGCCAAGGATCCACCCTCCCTGATGGAACCACCTAAAGCTAAAGAGGATGATTATGATTTTCTGAAGGAAGGAAGGAGGCAGACTGAGGAGAGATTTCAAAAAGCACTTACAAGAGTCAAGTCCATGGCTCAGTATCCTGAGGGACGAGACCAATATCGTAGGCTGCTTACTGTGGTTCAAAAGTGCCGAGAAACCAAGGTGAGTAATATGGCTATTACTACTACTTCAGAAGAGATAATAGAAGGCGATGACATGATTGATATCGACTCGCTACTGGATGATGATGCTTTGATGTCTATGACATTTGATTGA 3282 41.68 MANTVHILADIDQLLIEAKHRWLRPAEICEILRNYPKFHIASEPPERPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNIGAVIETDEVSSSSQKSSPKSSSYSSSQNQAASENADSPSPTSTLTSFCEDADTEDTYQATSRFHSFPTSPKMGNGLLVNKKDAGLSNFYFPNSSSDNVEAWSSVSAVEYVSQVQKDGLGGSDGSIGVIGSQKTLSSASWEEILQQCTTGFQTVPSHVLTSSIEPLSSGIVLGQENSIPGKPLASNSAIKEDFGSSLTMTSNWQVPFEDNTLSFSKRHVDQFPDLYSVYDIDSRLNEQKSHSAPFGSGHEMFRAHSGLENEEILSNNLEFQFKEGESYSAMRLSSENDMSKEGTISYSLALKQSLIDGEESLKKVDSFSRWVSRELVDVDDLHMHPSSGLSWSTVECGDMVDDSSLSPSLSEDQLFSIIDFSPKWTLADFETEVVIIGKFLGKNHGTKCYWSCMFGEVEVPAEVLADGILCCHAPPHSVGQVPFYVTCSNRLACSEVREFDYLAGSAQDVDVTDVYNAGATEELHMHLRFERLLSLRSSDPPNNLSEGALEKRNLIRKLISIKEEEDCYGEEPNSQNDQIQHQSKESLFVKLMKEKLYSWLIRKVIEDGKGPNILDDKGQGVIHLAAALGYDWAIRPIVAAGVNINFRDVNGWTAVHWAAFYGRESTVGNLVATFGAAPGLPSDPSPGNPLGIMPAELASINGHKGISGFLAESSLTSYVSSVSMKDTEDDGVLDVSKKKAVYTVSERRATPIDDGFMPGDLSLKDSLTAVCNATQAADRIHLMFRMQSFQRKKLSECHSDEFGSSDDSAISFVTARGRKSGLSNSPAHAAAVHIQKKFRGWRMRKEFLLIRQRIVKIQAHVRGHQVRKQYKKIVWSVGILDKIILRWRRKGSGLRGFRPDAVAKDPPSLMEPPKAKEDDYDFLKEGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKVSNMAITTTSEEIIEGDDMIDIDSLLDDDALMSMTFD 1093
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2693424 2708065 - Lag0014618.1 Lac12g0246 588843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0246 1093 MobiDBLite consensus disorder prediction 144 185 - -
Lac12g0246 1093 ProSiteProfiles IQ motif profile. 938 962 - -
Lac12g0246 1093 SUPERFAMILY Ankyrin repeat 687 800 IPR036770 -
Lac12g0246 1093 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 10 1056 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Lac12g0246 1093 SMART CG_1_2 14 132 IPR005559 GO:0003677(InterPro)
Lac12g0246 1093 Gene3D Immunoglobulins 498 593 IPR013783 -
Lac12g0246 1093 SUPERFAMILY E set domains 505 589 IPR014756 -
Lac12g0246 1093 Pfam IPT/TIG domain 505 577 IPR002909 -
Lac12g0246 1093 Pfam CG-1 domain 17 130 IPR005559 GO:0003677(InterPro)
Lac12g0246 1093 FunFam Calmodulin-binding transcription activator 2 498 593 - -
Lac12g0246 1093 SMART iq_5 914 936 IPR000048 GO:0005515(InterPro)
Lac12g0246 1093 SMART iq_5 937 959 IPR000048 GO:0005515(InterPro)
Lac12g0246 1093 Pfam IQ calmodulin-binding motif 916 935 IPR000048 GO:0005515(InterPro)
Lac12g0246 1093 Pfam IQ calmodulin-binding motif 940 959 IPR000048 GO:0005515(InterPro)
Lac12g0246 1093 FunFam Calmodulin-binding transcription activator 2 914 962 - -
Lac12g0246 1093 Gene3D - 915 962 - -
Lac12g0246 1093 Gene3D - 638 802 IPR036770 -
Lac12g0246 1093 ProSiteProfiles IQ motif profile. 915 944 - -
Lac12g0246 1093 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 915 965 IPR027417 -
Lac12g0246 1093 ProSiteProfiles CG-1 DNA-binding domain profile. 11 137 IPR005559 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0246 Lac-Chr12:2693424 Lac4g1835 Lac-Chr4:37508664 6.80E-111 dispersed
Lac12g0246 Lac-Chr12:2693424 Lac5g1940 Lac-Chr5:37727040 2.50E-137 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23010 PF03859 CG-1 2.90E-50 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0246 K21596 - csv:101203707 1776.53