Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac12g0246 | ATGGCTAACACAGTTCATATTCTTGCAGATATTGATCAGTTATTGATAGAAGCAAAACATCGTTGGTTACGTCCAGCTGAAATTTGTGAAATACTCCGTAACTATCCTAAGTTTCATATTGCTTCAGAGCCTCCAGAGAGACCATCGAGTGGATCGCTTTTTCTTTTTGATCGGAAGGTTCTGAGGTATTTTAGAAAGGATGGACATAAATGGAGGAAGAAGAAAGATGGCAAAACTGTTAAGGAAGCTCATGAGAAGCTGAAGGTTGGCAGCATTGATGTATTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAAAGGCGCAGTTATTGGATGCTTGAAGAGCATTTAATGCACATAGTTTTTGTCCACTACTTGGAAGTTAAGGGCAATAGAACCAATATTGGAGCTGTTATTGAGACTGATGAGGTTTCATCAAGTTCACAGAAGAGCAGTCCTAAGAGTTCTAGCTATTCCAGCAGTCAGAATCAAGCAGCTTCTGAAAATGCAGATTCCCCCAGTCCAACTAGCACTTTGACATCATTTTGTGAAGATGCTGATACTGAAGACACTTACCAAGCAACTTCAAGATTTCACTCGTTTCCCACATCACCAAAAATGGGAAATGGTCTTCTGGTGAATAAAAAAGATGCTGGTCTATCAAATTTTTATTTTCCGAATTCCTCTTCTGATAATGTTGAAGCCTGGTCATCAGTTTCTGCCGTGGAATATGTATCACAAGTTCAGAAAGATGGGCTTGGAGGTAGTGATGGTAGTATTGGTGTAATTGGTTCTCAGAAGACACTCAGCTCTGCTTCGTGGGAAGAGATCTTGCAACAATGTACAACTGGATTTCAAACTGTACCTTCTCATGTTTTAACCTCTTCGATTGAACCTCTATCTTCTGGAATTGTCCTTGGACAAGAGAATTCAATTCCTGGCAAGCCTTTAGCCAGTAATAGTGCTATTAAAGAGGACTTTGGGAGCTCTCTGACAATGACATCAAACTGGCAGGTTCCTTTTGAAGACAATACTTTGTCCTTTTCAAAACGGCACGTTGACCAGTTTCCAGATTTGTATTCAGTTTATGACATAGATAGCAGGTTAAATGAGCAGAAATCTCATAGTGCACCTTTTGGAAGTGGACATGAGATGTTTCGTGCTCATTCTGGCCTAGAGAATGAGGAGATTTTGTCAAACAACCTTGAATTCCAGTTCAAAGAAGGAGAATCGTATTCTGCAATGAGGTTGAGTTCTGAAAATGATATGTCTAAAGAAGGTACCATCAGCTATTCTTTGGCTTTGAAACAATCATTAATAGATGGGGAGGAGAGTTTGAAGAAAGTCGACAGCTTCTCACGGTGGGTATCTAGAGAGCTTGTGGATGTTGATGATTTGCACATGCATCCATCATCTGGCTTGTCTTGGAGTACTGTAGAATGCGGTGATATGGTGGATGATTCATCATTAAGCCCTTCTCTCTCTGAAGACCAGCTTTTCAGTATAATAGACTTTTCTCCAAAGTGGACACTTGCAGATTTTGAAACTGAGGTTGTGATTATAGGAAAGTTTCTGGGGAAGAATCATGGCACCAAATGTTACTGGTCATGTATGTTTGGAGAAGTCGAGGTTCCTGCAGAAGTTTTGGCTGATGGGATCCTGTGCTGTCACGCACCCCCACATAGTGTTGGGCAAGTCCCCTTTTATGTTACATGTTCCAACAGATTAGCTTGCAGTGAGGTGCGTGAATTTGATTACTTGGCAGGCTCTGCTCAAGATGTAGATGTTACCGATGTATATAATGCAGGTGCTACAGAAGAATTACATATGCATTTGCGATTTGAGAGGTTACTGTCCCTTAGATCTTCTGATCCTCCAAATAACCTCTCTGAAGGTGCCTTGGAGAAACGGAACTTAATCAGAAAGCTTATCTCAATAAAAGAAGAAGAAGATTGTTATGGGGAAGAGCCAAATTCTCAGAATGATCAAATTCAGCATCAAAGCAAGGAGTCTCTTTTTGTAAAGCTGATGAAAGAAAAGCTGTACTCATGGCTTATCCGTAAAGTAATTGAAGATGGCAAAGGTCCTAATATATTGGATGACAAGGGGCAGGGGGTAATTCATTTAGCAGCAGCCCTTGGTTATGATTGGGCAATCAGACCGATTGTAGCTGCAGGAGTGAATATAAACTTTCGAGACGTCAATGGATGGACTGCTGTTCATTGGGCAGCATTCTATGGCAGGGAGTCGACAGTTGGAAACCTTGTCGCAACTTTTGGTGCTGCTCCTGGATTGCCGTCAGATCCATCTCCAGGAAATCCTTTGGGCATAATGCCTGCAGAACTCGCATCTATTAATGGACACAAAGGAATCTCTGGTTTTCTAGCGGAGTCATCATTGACCAGCTATGTCTCATCTGTATCAATGAAAGATACTGAAGATGATGGTGTGCTAGATGTTTCAAAAAAGAAAGCTGTATATACTGTTTCTGAACGAAGGGCAACACCAATAGATGATGGTTTTATGCCCGGTGATTTATCCTTGAAGGATTCATTGACTGCTGTCTGCAATGCTACTCAAGCTGCTGACCGTATACATCTGATGTTTAGAATGCAGTCATTTCAGAGGAAAAAATTATCAGAGTGTCATTCTGATGAATTTGGATCCTCAGATGATAGTGCTATTTCATTTGTCACTGCCAGGGGACGAAAGTCCGGACTAAGTAACAGCCCGGCCCATGCTGCTGCAGTTCACATACAGAAAAAGTTCCGGGGTTGGAGAATGAGAAAAGAATTCTTGCTAATACGTCAAAGAATAGTGAAAATTCAGGCCCATGTGAGAGGACACCAGGTGAGGAAGCAATATAAAAAGATCGTCTGGTCGGTAGGAATATTAGACAAGATTATTTTGAGATGGAGACGGAAGGGGAGTGGTTTGCGAGGCTTCCGACCAGATGCAGTTGCCAAGGATCCACCCTCCCTGATGGAACCACCTAAAGCTAAAGAGGATGATTATGATTTTCTGAAGGAAGGAAGGAGGCAGACTGAGGAGAGATTTCAAAAAGCACTTACAAGAGTCAAGTCCATGGCTCAGTATCCTGAGGGACGAGACCAATATCGTAGGCTGCTTACTGTGGTTCAAAAGTGCCGAGAAACCAAGGTGAGTAATATGGCTATTACTACTACTTCAGAAGAGATAATAGAAGGCGATGACATGATTGATATCGACTCGCTACTGGATGATGATGCTTTGATGTCTATGACATTTGATTGA | 3282 | 41.68 | MANTVHILADIDQLLIEAKHRWLRPAEICEILRNYPKFHIASEPPERPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNIGAVIETDEVSSSSQKSSPKSSSYSSSQNQAASENADSPSPTSTLTSFCEDADTEDTYQATSRFHSFPTSPKMGNGLLVNKKDAGLSNFYFPNSSSDNVEAWSSVSAVEYVSQVQKDGLGGSDGSIGVIGSQKTLSSASWEEILQQCTTGFQTVPSHVLTSSIEPLSSGIVLGQENSIPGKPLASNSAIKEDFGSSLTMTSNWQVPFEDNTLSFSKRHVDQFPDLYSVYDIDSRLNEQKSHSAPFGSGHEMFRAHSGLENEEILSNNLEFQFKEGESYSAMRLSSENDMSKEGTISYSLALKQSLIDGEESLKKVDSFSRWVSRELVDVDDLHMHPSSGLSWSTVECGDMVDDSSLSPSLSEDQLFSIIDFSPKWTLADFETEVVIIGKFLGKNHGTKCYWSCMFGEVEVPAEVLADGILCCHAPPHSVGQVPFYVTCSNRLACSEVREFDYLAGSAQDVDVTDVYNAGATEELHMHLRFERLLSLRSSDPPNNLSEGALEKRNLIRKLISIKEEEDCYGEEPNSQNDQIQHQSKESLFVKLMKEKLYSWLIRKVIEDGKGPNILDDKGQGVIHLAAALGYDWAIRPIVAAGVNINFRDVNGWTAVHWAAFYGRESTVGNLVATFGAAPGLPSDPSPGNPLGIMPAELASINGHKGISGFLAESSLTSYVSSVSMKDTEDDGVLDVSKKKAVYTVSERRATPIDDGFMPGDLSLKDSLTAVCNATQAADRIHLMFRMQSFQRKKLSECHSDEFGSSDDSAISFVTARGRKSGLSNSPAHAAAVHIQKKFRGWRMRKEFLLIRQRIVKIQAHVRGHQVRKQYKKIVWSVGILDKIILRWRRKGSGLRGFRPDAVAKDPPSLMEPPKAKEDDYDFLKEGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKVSNMAITTTSEEIIEGDDMIDIDSLLDDDALMSMTFD | 1093 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 2693424 | 2708065 | - | Lag0014618.1 | Lac12g0246 | 588843 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac12g0246 | 1093 | MobiDBLite | consensus disorder prediction | 144 | 185 | - | - | |
Lac12g0246 | 1093 | ProSiteProfiles | IQ motif profile. | 938 | 962 | - | - | |
Lac12g0246 | 1093 | SUPERFAMILY | Ankyrin repeat | 687 | 800 | IPR036770 | - | |
Lac12g0246 | 1093 | PANTHER | CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA | 10 | 1056 | - | GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER) | |
Lac12g0246 | 1093 | SMART | CG_1_2 | 14 | 132 | IPR005559 | GO:0003677(InterPro) | |
Lac12g0246 | 1093 | Gene3D | Immunoglobulins | 498 | 593 | IPR013783 | - | |
Lac12g0246 | 1093 | SUPERFAMILY | E set domains | 505 | 589 | IPR014756 | - | |
Lac12g0246 | 1093 | Pfam | IPT/TIG domain | 505 | 577 | IPR002909 | - | |
Lac12g0246 | 1093 | Pfam | CG-1 domain | 17 | 130 | IPR005559 | GO:0003677(InterPro) | |
Lac12g0246 | 1093 | FunFam | Calmodulin-binding transcription activator 2 | 498 | 593 | - | - | |
Lac12g0246 | 1093 | SMART | iq_5 | 914 | 936 | IPR000048 | GO:0005515(InterPro) | |
Lac12g0246 | 1093 | SMART | iq_5 | 937 | 959 | IPR000048 | GO:0005515(InterPro) | |
Lac12g0246 | 1093 | Pfam | IQ calmodulin-binding motif | 916 | 935 | IPR000048 | GO:0005515(InterPro) | |
Lac12g0246 | 1093 | Pfam | IQ calmodulin-binding motif | 940 | 959 | IPR000048 | GO:0005515(InterPro) | |
Lac12g0246 | 1093 | FunFam | Calmodulin-binding transcription activator 2 | 914 | 962 | - | - | |
Lac12g0246 | 1093 | Gene3D | - | 915 | 962 | - | - | |
Lac12g0246 | 1093 | Gene3D | - | 638 | 802 | IPR036770 | - | |
Lac12g0246 | 1093 | ProSiteProfiles | IQ motif profile. | 915 | 944 | - | - | |
Lac12g0246 | 1093 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 915 | 965 | IPR027417 | - | |
Lac12g0246 | 1093 | ProSiteProfiles | CG-1 DNA-binding domain profile. | 11 | 137 | IPR005559 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac12g0246 | Lac-Chr12:2693424 | Lac4g1835 | Lac-Chr4:37508664 | 6.80E-111 | dispersed | |
Lac12g0246 | Lac-Chr12:2693424 | Lac5g1940 | Lac-Chr5:37727040 | 2.50E-137 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23010 | PF03859 | CG-1 | 2.90E-50 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac12g0246 | K21596 | - | csv:101203707 | 1776.53 |