Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0256 ATGGCGAAACTTGGTTATAGTCCAATGCTCGTTCTCGCTATGTCTGTGGCAGTGCTACTCGGTTTCACTGCGACCGCCGTGCATGGCCAAGGCACACGCATTGGCTTCTACTCTAGTTCTTGTCCTCGAGTTGAGTCCATCGTTAGGTCTACCGTACAGTCTCATTTTCGATCTGACCCCACGGTCGCTCCTGGATTGCTGAGAATGCACTTCCACGACTGCTTCGTTCGAGGCTGTGATGCCTCTGTACTTCTCGCTGGCTCCGGTACCGAGAGGACTGCGCCACCCAACCTTTCCTTGAAAGGGTTCGAGGTGATCGACGATGCCAAGTCGCAGCTCGAAACTGCTTGTCCTGGCGTTGTGTCCTGCGCTGACATTCTCGCCCTCGCTGCTCGTGACTCAGTAGTTTTGACAAGTGGAGTGAGTTGGGGAGTGCCCACAGGACGAAGAGATGGGACAGTCTCAGTGGCGTCAGAAGCTAACAACTTACCTGGATTTACAGACTCAATAGACGTTCAAAAGCAAAAATTCAGCGACAAGGGTCTCAACACTCAAGACCTCGTCACTCTCGTCGGTGGGCACACCATAGGGGTTGCACAATGTCAGTTTTTCCGATACAGACTATTCAACTTCACAGCAAACGGTGCGGATCCGAGCATCGACCCAGCATTCGTGAGCCAGTTGCAAGCGCTATGCCCTCAGAATGGAGACGGCAGTCGCGAGGTTGGGCTGGACACAGGCAGCCCCGGCAGGTTCGACACGTCCTTCTTCTCAAACTTGAGGAATGGGCGTGGGATCTTGGAGTCCGATCAAAAGCTGTGGACCGATGCCTCCACTCGCACTTTCGTCCAACGCTTCTTGGGTTTGAGAGGCTTGTTGGGCTTGACTTTCAGCGTCGAGTTCGGGAAATCCATGGTTAAGATGAGCAACATTGAACTCAAGACTGGTACTCAGGGAGAGATTCGTAAAGTTTGCTCTGCAGTTAACTGA 990 52.93 MAKLGYSPMLVLAMSVAVLLGFTATAVHGQGTRIGFYSSSCPRVESIVRSTVQSHFRSDPTVAPGLLRMHFHDCFVRGCDASVLLAGSGTERTAPPNLSLKGFEVIDDAKSQLETACPGVVSCADILALAARDSVVLTSGVSWGVPTGRRDGTVSVASEANNLPGFTDSIDVQKQKFSDKGLNTQDLVTLVGGHTIGVAQCQFFRYRLFNFTANGADPSIDPAFVSQLQALCPQNGDGSREVGLDTGSPGRFDTSFFSNLRNGRGILESDQKLWTDASTRTFVQRFLGLRGLLGLTFSVEFGKSMVKMSNIELKTGTQGEIRKVCSAVN 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2813335 2814611 - Lag0014628.1 Lac12g0256 588853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0256 329 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Lac12g0256 329 PRINTS Plant peroxidase signature 41 60 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0256 329 PRINTS Plant peroxidase signature 303 316 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0256 329 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0256 329 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0256 329 PRINTS Plant peroxidase signature 65 85 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0256 329 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0256 329 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0256 329 PRINTS Plant peroxidase signature 243 258 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0256 329 PRINTS Plant peroxidase signature 259 276 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0256 329 CDD secretory_peroxidase 33 328 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lac12g0256 329 FunFam Peroxidase 35 177 - -
Lac12g0256 329 ProSitePatterns Peroxidases active site signature. 63 74 IPR019794 GO:0004601(InterPro)
Lac12g0256 329 Gene3D - 35 329 - -
Lac12g0256 329 SUPERFAMILY Heme-dependent peroxidases 33 329 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0256 329 Pfam Peroxidase 48 286 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0256 329 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0256 329 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0256 329 PRINTS Haem peroxidase superfamily signature 245 260 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0256 329 PRINTS Haem peroxidase superfamily signature 63 77 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0256 329 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0256 329 ProSiteProfiles Plant heme peroxidase family profile. 31 329 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0256 329 FunFam Peroxidase 164 308 - -
Lac12g0256 329 Gene3D Peroxidase, domain 2 164 308 - -
Lac12g0256 329 PANTHER PEROXIDASE 25-RELATED 19 325 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1775 Lac-Chr10:21559474 Lac12g0256 Lac-Chr12:2813335 2.70E-63 dispersed
Lac12g0256 Lac-Chr12:2813335 Lac3g0810 Lac-Chr3:6451293 2.40E-112 dispersed
Lac12g0256 Lac-Chr12:2813335 Lac12g0621 Lac-Chr12:6575020 5.10E-70 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0256 K00430 - csv:101217567 532.332