Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0260 ATGAGTGGGAGGATCGTGAGTGACGAGGGCACGGCGCAGTCGGAGTGGCCGAGCGGGGCACCGCCCCCGAAGGTGGGCGTGCCGCCGAGGAAGAACGTGTGGGAGGAGTTTAAATCTGTGGTGAATGAGACGTTCTTCCCTGATCAGCCTCTTCGTCAGTTCAAGGACCAACCCAAGCACAAGAAGGTTTCTCTGTTTGTCCAAGGTCTCTTCCCAATATTCCAATGGGGTAAGGGATATAGCTTGAGTAAGTTCAAAGGAGACCTCATCGCTGGCCTCACCATTGCTAGTCTCTGCATTCCTCAGGACATTGGATACGCCAAACTTGCCTATTTGCCCGCTGAAAACGGACTTTACAGTAGCTTCGTTCCGCCACTAGTGTACGCAGTGATGGGGAGCTCTAGGGATATTGCCATTGGTCCCGTCGCTGTCGTGTCGCTTTTGCTCGGGACGCTGTTGATGAAGGAGTACGACCCGGTGAAAGAAGCTGAGCAGTACAAGCGGCTGGCTTTCACGGCGACTTTCTTCGCCGGAGTAACTCAGTTGGCTCTAGGTTTCCTCCGACTCGGATTCTTGATTGACTTTCTGTCGCACGCCGCCATTGTTGGGTTCATGGGCGGCGCCGCCGTGACCATCGCCCTTCAGCAGCTGAAAGGTCTCTTTGGCATAGCAAACTTCACCAAGAAAACTGATATCATTTCTGTGATGCGCTCTGTTTGGAGTAATGTGCACCATGGGTGGAACTGGCAGACTATACTCATAGGGGTTTCATTTTTGGCCTTTCTTCTGGCTACCAAATACATTGGCAAGAAGCATAAGAAACTTTTTTGGGTACCTGCCATTGCCCCTTTAATATCTGTTGTACTCTCGACATTTTTTGTTTATATCACTCGAGCAGACAAACATGGAGTTCAAATTGTGAAAAACATAAAGAAAGGAATAAATCCATCCTCCCTTGATGAGATATTCTTCCATGGAGACAATCTCACCAAAGGTTTCAAGATTGGAGTGGTTGCTGGTTTGATTGCCCTCACGGAAGCTGTGGCCATTGCAAGAACATTTGCAGACCTAAAGGACTACGAGATCGATGGAAACAAAGAAATGATGGCTCTTGGAACCATGAACATCGCTGGCTCCATGACTTCTTGTTATGTTGCCACAGGATCATTCTCCCGATCGGCCGTAAACTACATGGCTGGCTGCAACACACCGGTGTCGAACATCGTCATGGCCTGCGTCGTTCTCCTTACCTTAGAGGTCATCACACCCCTTTTCAAGTACACCCCGAACGCCATTCTCGCATCCATCATCATCACTGCCGTCATAGGTCTCATCGACGTCGATGCCGTGATTTTGTTATGGAAGATCGACAAATTCGACTTCATCGCCTGCATGGGAGCTTTCTTCGGTGTCGTCTTTGATTCGGTCGAGATTGGTCTTCTCATTGCTGTTAGTCTGTCGCTGTTCAAAATTTTGTTACAAGTGACGAGACCCCGCATTGCATTGCTTGGAAAGCTACCAAAGATTGCCATTTTTAGAAACATTTTGCAGTACCCTGGAGCAAAGAGGATTGAAGGAGTTCTAATGGTTAGGGTTGATTCTTCAATATACTTCTCCAATGCTAACTATGTCAAAGAAAGGATATTGAGATGGCTGGCAGAGGAAACAGAGAAGCTAGAAGACCAATCTCTACCGATCAAAGTCGTCGTCGTCGACATGTCTCCTGTATCCGATATCGACACGAGCGGCATCCACGCCTTGGAGGGATTGCATACTCATTTGCAGAAGAAGGAAATTGAACTTGCACTTGCAAATCCTGGCCCAGTGATCATGGAGAAGCTCTTAGCTGGAAACTTTGACAAGCTCATTGGAGAACACAACATTTTCCTCAGTGTCAACGAAGCTATTAAGATTTATGCCCCAAATGCTGCTCTTGATCCTTAA 1944 47.99 MSGRIVSDEGTAQSEWPSGAPPPKVGVPPRKNVWEEFKSVVNETFFPDQPLRQFKDQPKHKKVSLFVQGLFPIFQWGKGYSLSKFKGDLIAGLTIASLCIPQDIGYAKLAYLPAENGLYSSFVPPLVYAVMGSSRDIAIGPVAVVSLLLGTLLMKEYDPVKEAEQYKRLAFTATFFAGVTQLALGFLRLGFLIDFLSHAAIVGFMGGAAVTIALQQLKGLFGIANFTKKTDIISVMRSVWSNVHHGWNWQTILIGVSFLAFLLATKYIGKKHKKLFWVPAIAPLISVVLSTFFVYITRADKHGVQIVKNIKKGINPSSLDEIFFHGDNLTKGFKIGVVAGLIALTEAVAIARTFADLKDYEIDGNKEMMALGTMNIAGSMTSCYVATGSFSRSAVNYMAGCNTPVSNIVMACVVLLTLEVITPLFKYTPNAILASIIITAVIGLIDVDAVILLWKIDKFDFIACMGAFFGVVFDSVEIGLLIAVSLSLFKILLQVTRPRIALLGKLPKIAIFRNILQYPGAKRIEGVLMVRVDSSIYFSNANYVKERILRWLAEETEKLEDQSLPIKVVVVDMSPVSDIDTSGIHALEGLHTHLQKKEIELALANPGPVIMEKLLAGNFDKLIGEHNIFLSVNEAIKIYAPNAALDP 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2855453 2862697 - Lag0014632.1 Lac12g0260 588857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0260 647 Gene3D STAS domain 512 642 IPR036513 -
Lac12g0260 647 FunFam Sulfate transporter 31 497 642 - -
Lac12g0260 647 Pfam Sulfate permease family 85 466 IPR011547 GO:0016020(InterPro)
Lac12g0260 647 Pfam STAS domain 519 635 IPR002645 -
Lac12g0260 647 PANTHER SULFATE TRANSPORTER 58 637 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac12g0260 647 MobiDBLite consensus disorder prediction 1 28 - -
Lac12g0260 647 SUPERFAMILY SpoIIaa-like 522 638 IPR036513 -
Lac12g0260 647 ProSiteProfiles STAS domain profile. 517 639 IPR002645 -
Lac12g0260 647 CDD STAS_SulP_like_sulfate_transporter 518 632 - -
Lac12g0260 647 NCBIfam sulfate permease 72 635 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0260 Lac-Chr12:2855453 Lac8g1915 Lac-Chr8:37413485 8.00E-261 dispersed
Lac12g0260 Lac-Chr12:2855453 Lac12g0261 Lac-Chr12:2871162 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0260 K17470 - csv:101202746 1150.96