Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0261 ATGAGCGGACGAACGGTAGGCGATGAGGGTGTGGGGCAATCGGGGCGGCTGAGCGAGACGTCGACCGTGGCAACGCCCTTGAAGGTGGGCGTGCCGCCGAGGAAGAATGCGTGGGAGGAATTTAAATCAGTGGTGAATGAGACGTTCTTCCCTGATCAGCCTCTTCGGCGTTTCAAAGACAAGCCCAAACATAAGAAGTTTGCTCTGTTTGTCCAAAGCATATTCCCCATATTCCAATGGGGAAGGGATTACAGCTTGGTTAAGTTTAAAGGTGACCTCATCGCTGGCTTCACTATTGCCAGTCTTTGCATACCTCAAGACATTGGATATGCCAAGCTCGCCTATTTGCCTGCACAAAATGGACTATATAGTAGCTTCGTCCCACCACTAGTGTACGCGGTGATGGGGAGCTCGAGGGATATCGCGATTGGCCCTGTCGCCGTCGTGTCGCTTCTGCTCGGGACGTTATTGCAGCAGGAGTATGACCCAGTGAAAGAAGCGGAGGATTACAAACGACTAGCTTTCACGGCGACTTTCTTCGCCGGAGTAACTCAGTTGGCTCTAGGTTTCCTCCGACTCGGATTCTTGATTGACTTTCTGTCGCACGCCGCCATTGTTGGGTTCATGGGCGGCGCGGCCGTGACCATCGCCCTTCAGCAGCTGAAAGGTCTCCTTGGCATATCAAACTTCACCAAGAAAACTGATATCATTTCTGTGATGCGCTCTGTTTGGAGTAATGTGCACCATGGGTGGAACTGGCAGACTATACTGATAGGCGTTTCATTTTTAGCCTTTCTTCTGGCTACCAAATACATTGGCAAGAAAAATAAGAAACTCTTTTGGATACCCGCCATCGCACCCTTAACATCAGTTATACTCTCGACATTTTTTGTTTACATCACTCGCTCAGATAAACAGGGCGTTCAAATTGTTAGAAACATAAAGCAAGGAATAAATCCTCCATCCCTTGATCAAATATTCTTCCATGGAGACAATCTCACCAAAGGTTTCAAGATTGGAGTGGTTGCTGGTTTGATTGCCCTCACGGAAGCTGTGGCCATTGCAAGAACATTTGCAGACCTAAAGGACTACGAGATCGATGGGAACAAAGAAATGATGGCTCTTGGAACCATGAACATTGCTGGCTCCATGACTTCTTGCTATGTAGCCACAGGATCGTTCTCCCGATCGGCGGTGAACTACATGGCCGGCTGCAACACACCGGTGTCGAACATCGTCATGGCCTGCGTCGTTCTCCTTACCTTAGAGGTCATCACACCCCTTTTCAAGTACACCCCTAATGCCATTCTTGCCTCCATCATCATCTGCGCCGTGATCGGTCTCATCGACATCGACGCCGTGCTTTTGTTATGGAAGATCGACAAATTCGACTTCATCGCCTGCATGGGAGCGTTCTTCGGCGTCGTCTTTGATTCTGTCGAGATTGGCCTTCTCATTGCTGTTAGTCTGTCGCTATTCAAAATTCTGTTACAAGTGACAAGACCGCGCATTGCGTTGCTTGGGAAGCTTCCAAAGATTGCCATTTTTAGAAACATTTTACAGTACCCTGGAGCAAGGAGGATTGAAGGAGTTCTAATGGTTAGGGTTGATTCTTCAATATACTTCTCCAACGCCAACTATGTCAAAGAAAGGATACTGAGATGGCTGGCAGATGAAACAGAGAAGCTAGATGATCAATCTCTGCCAATCAAAGTCGTCGTCGTCGACATGTCTCCTGTATCCGATATCGACACGAGCGGCATCCACGCCTTGGAGGGATTGCATACTCATTTGCAGAAGAAGGAAATTGAACTTGCACTTGCAAATCCTGGTCCAGTGATCATGGAGAAGCTCTTAGCTGCAAAGTTCGACCAGTTCATTGGAGAAGACAACATCTTCTTTAGTGTCAACGAAGCTATTAAGATTTATGCCCCAAATTCTGCTCTTGATCCTTAA 1956 47.85 MSGRTVGDEGVGQSGRLSETSTVATPLKVGVPPRKNAWEEFKSVVNETFFPDQPLRRFKDKPKHKKFALFVQSIFPIFQWGRDYSLVKFKGDLIAGFTIASLCIPQDIGYAKLAYLPAQNGLYSSFVPPLVYAVMGSSRDIAIGPVAVVSLLLGTLLQQEYDPVKEAEDYKRLAFTATFFAGVTQLALGFLRLGFLIDFLSHAAIVGFMGGAAVTIALQQLKGLLGISNFTKKTDIISVMRSVWSNVHHGWNWQTILIGVSFLAFLLATKYIGKKNKKLFWIPAIAPLTSVILSTFFVYITRSDKQGVQIVRNIKQGINPPSLDQIFFHGDNLTKGFKIGVVAGLIALTEAVAIARTFADLKDYEIDGNKEMMALGTMNIAGSMTSCYVATGSFSRSAVNYMAGCNTPVSNIVMACVVLLTLEVITPLFKYTPNAILASIIICAVIGLIDIDAVLLLWKIDKFDFIACMGAFFGVVFDSVEIGLLIAVSLSLFKILLQVTRPRIALLGKLPKIAIFRNILQYPGARRIEGVLMVRVDSSIYFSNANYVKERILRWLADETEKLDDQSLPIKVVVVDMSPVSDIDTSGIHALEGLHTHLQKKEIELALANPGPVIMEKLLAAKFDQFIGEDNIFFSVNEAIKIYAPNSALDP 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2871162 2876450 - Lag0014633.1 Lac12g0261 588858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0261 651 SUPERFAMILY SpoIIaa-like 525 642 IPR036513 -
Lac12g0261 651 Pfam Sulfate permease family 89 470 IPR011547 GO:0016020(InterPro)
Lac12g0261 651 PANTHER SULFATE TRANSPORTER 61 641 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac12g0261 651 NCBIfam sulfate permease 76 639 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Lac12g0261 651 ProSiteProfiles STAS domain profile. 521 643 IPR002645 -
Lac12g0261 651 Pfam STAS domain 523 639 IPR002645 -
Lac12g0261 651 FunFam Sulfate transporter 31 501 646 - -
Lac12g0261 651 CDD STAS_SulP_like_sulfate_transporter 522 636 - -
Lac12g0261 651 Gene3D STAS domain 516 646 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0261 Lac-Chr12:2871162 Lac8g1915 Lac-Chr8:37413485 3.40E-259 dispersed
Lac12g0260 Lac-Chr12:2855453 Lac12g0261 Lac-Chr12:2871162 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0261 K17470 - csv:101202746 1138.25