Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0267 ATGAGAAACAATGAAATGGACAGAGCAAAGTCGGTGTTCTCTGCCCTCTTGCTTTTTCTGCGATTGGGCTTCATTTTACGGGTGTCTGCTAATGGTGAAGGTGATGCCCTAAATGCCTTCAAGTTGGGTTTGGTGGATCCTAACAATGTCTTGCAAAGTTGGAATCCCATACTTATAAATCCTTGCACATGGTTTCATGTTACATGTGATGAAAACGAAAGTGTTATACGAGTTGATCTTGGTAATGCGAATCTTTCTGGGAAATTGGTTCCACAGCTTGATCAACTCACAAACTTGCAGCATTTGGGACTTTACAGCAATAACCTCAGAGGAACAATTCCAGAACGGTTTGGAAATTTGAAAAACTTGGAGAGCCTGGATCTTTATTCTAACAGTTTAACTGGTCCCATACCTGACTCTCTGGGCAAGCTTACAAACTTAAGTAGCTTGCGTCTGAACAACAATAGTTTGTCGGGAACCATTCCAATGTCTTTAACCACTGTTCCACTTCAAGTTCTGGATCTTTCAAATAACCTTCTAACAGGAGACATTCCAGTCAATGGTTCGTTCTCTCGTTTTACACCAATCAGTTTTGCTAATAATCCTCTTGATATTTCTCCCTCCGCTCCATCTCCTCCAAGGACAGATGCAACACGAACATCTTCAGTTTCAACCAACTGCAAGCGTCAATCAAAAGTTCTCTGCATATTAGAAGCTTCTGCCTCCATGAGAGAAAGAAAATCCAATTTTCTTGAAGGCCTGGGATCTGGACGCTCTGATACCAACTTGATATCATGGCATATTGTTGCTCCAGGTGATGGTGCTAATGGAGTTATTGTTGGAGCAATTGTTGCCGCTGCTGCTTTGCTGATTGTTGTGCCTGCTATTGCATTTACTCTTTGGCGACGAAAAAATCGACCAGATCATTTCTTTGATGTACCTGCCGAAGAAGATCCAGAAGTTAACCTGGGGCAGCTCAAAAAATATTCTCTACGCGAGCTGCAAGTTGCCACTGATTATTTTAGCCAACAGAACATTTTGGGCAAAGGTGGATTTGGCAAGGTCTATAAAGGTCGTTTGGCTGATGGTTCTCTTGTGGCTGTAAAACGACTGAAAGAGGAGCGTGCCGAGGGTGGGGAGCTTCAATTTCAGACTGAAGTAGAGATGATCAGCATGGCTGTCCATCGTAATCTGCTTCGTCTAAATGGGTTTTGCATGTCACCAACTGAACGATTGCTTGTCTATCCCTATATGGCTAATGGAAGTTTAGCATCATGTTTAAGAGAGCGTAAGCAATGCCCGCCACTCAACTGGGCAATACGTAAACGAGTTGCTTTGGGGGCTGCACGGGGACTTGAATATTTGCATAATCATTGTGATCCTAAAATTATTCACCGTGATGTGAAAGCTGCAAATATATTATTAGATGATGAATTTGAGGCTGTTGTTGGTGATTTTGGGTTGGCTAAACTCATGAACTACAAGGATACTCATGTTACAACTGCTGTTCGTGGAACAATTGGGCATATAGCGCCTGAGTACCTCTCGTCTGGAAAGTCTTCTGAAAAAACTGATGTTTTTGGTTATGGAGTAATGCTTCTTGAACTTGTAACTGGACAGAAAGCCTTTGATCTTGCTCGGCTAGCAAAAGATGACGATGTCATGTTGCTTGATTGGGCGGCTGATGCTTTATCCAGAGTGCCACATGAGATAGAGTTGTCGAATATATCTGTTCCATCCATCATCGATCTGGTGATAGTTCAAAAAGAAGTGGAGGAAGATCCTGAATTAGTCAAGGTACAACAAGAGATTGAAGCGGATCCCCTATTGCACACGAAGTTCTCCAACAAACAGGGCAAGTTACTTTACAAGGAACGATTTGTACGGTTTGCCAATGAAATAAGACCAACACGATGTCTCCAGCTGGGTTGCTGCAGCCATTACCTATTCTCAAACGAATTTGGAAAGATATATCAATGGATTTCATTGAAGCACTGCCACGTTCTAAAGGCTTCAGAGAACTCAGCTCAAGAAGAGCACGACTTTTCATCCCTAAACTTACAGCCAAATGGAGAGGGTGAATCGTTGTGTGGAGAACTATCTACGTTGTTTTTGTGGTGGAGCAACCAAAGAAATGGGAGCAATGGTTATCTTGGACGGGGAGTATTGTGTAGATCAGCACTTAGTGGAAAGAGATCAAATGATCAAGGTGCTGAAGGAACATCTCGGAATTGCATAGAACCGAATGAAGAGACAGTGATAGAGAAGATTGGCGAAGTTGCATACCGTCTGGAACTGCCACCGAAGGCTAATATACACAATGTTTTACATGTATCTCAGCTGAAGAAGGTGCTTAGGGAATGGCAGTTTACACAATCACAGGGATCAATATTTACAGAGGACTATGAATGTCAAGTGGCAGGACAAGCCGTATTGCGATGCAACATGGGAAGAGGTCGAGTTCATCCGGAAGCTTCTTCTTTCCATCTTGAGGACAAGGTGCCCATCAACCTTGGGGTAAAAGGGCTTCTAAGTGATAAGAAACTGGAAACGTTGGTCGACTCCGATCTTCGGGGCAATTACGTAGAGGAAGAACTGGAGCAGCTAATTCAAGTTGCACTACTTTGCACACAAAGCTCCCCTGTGGAGAGACCTAAGATGTCAGAGGTGTTGCAAATGCTGGAAGGCGATGGTTTGGCTGAAAGATGGGAGGAATGGCAGAAAGAAGAGAACTCACGCCAAAACTTTGACATTATGGTCCATTCTTACCACCAGAGTACAACTCCTCAGGTTTTTGATTCCACCTCTCGTATTGATCCTGATGTGTTGTCTGGTCCAAGATGA 2844 43.28 MRNNEMDRAKSVFSALLLFLRLGFILRVSANGEGDALNAFKLGLVDPNNVLQSWNPILINPCTWFHVTCDENESVIRVDLGNANLSGKLVPQLDQLTNLQHLGLYSNNLRGTIPERFGNLKNLESLDLYSNSLTGPIPDSLGKLTNLSSLRLNNNSLSGTIPMSLTTVPLQVLDLSNNLLTGDIPVNGSFSRFTPISFANNPLDISPSAPSPPRTDATRTSSVSTNCKRQSKVLCILEASASMRERKSNFLEGLGSGRSDTNLISWHIVAPGDGANGVIVGAIVAAAALLIVVPAIAFTLWRRKNRPDHFFDVPAEEDPEVNLGQLKKYSLRELQVATDYFSQQNILGKGGFGKVYKGRLADGSLVAVKRLKEERAEGGELQFQTEVEMISMAVHRNLLRLNGFCMSPTERLLVYPYMANGSLASCLRERKQCPPLNWAIRKRVALGAARGLEYLHNHCDPKIIHRDVKAANILLDDEFEAVVGDFGLAKLMNYKDTHVTTAVRGTIGHIAPEYLSSGKSSEKTDVFGYGVMLLELVTGQKAFDLARLAKDDDVMLLDWAADALSRVPHEIELSNISVPSIIDLVIVQKEVEEDPELVKVQQEIEADPLLHTKFSNKQGKLLYKERFVRFANEIRPTRCLQLGCCSHYLFSNEFGKIYQWISLKHCHVLKASENSAQEEHDFSSLNLQPNGEGESLCGELSTLFLWWSNQRNGSNGYLGRGVLCRSALSGKRSNDQGAEGTSRNCIEPNEETVIEKIGEVAYRLELPPKANIHNVLHVSQLKKVLREWQFTQSQGSIFTEDYECQVAGQAVLRCNMGRGRVHPEASSFHLEDKVPINLGVKGLLSDKKLETLVDSDLRGNYVEEELEQLIQVALLCTQSSPVERPKMSEVLQMLEGDGLAERWEEWQKEENSRQNFDIMVHSYHQSTTPQVFDSTSRIDPDVLSGPR 947
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2947561 2961440 + Lag0014639.1 Lac12g0267 588864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0267 947 Pfam Protein kinase domain 342 545 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g0267 947 Pfam Leucine Rich Repeat 170 186 IPR001611 GO:0005515(InterPro)
Lac12g0267 947 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524(InterPro)
Lac12g0267 947 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 809 919 - -
Lac12g0267 947 FunFam Somatic embryogenesis receptor kinase 1 29 215 - -
Lac12g0267 947 Gene3D Ribonuclease Inhibitor 30 209 IPR032675 -
Lac12g0267 947 FunFam Protein NSP-INTERACTING KINASE 1 418 564 - -
Lac12g0267 947 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac12g0267 947 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Lac12g0267 947 FunFam Somatic embryogenesis receptor kinase 1 310 417 - -
Lac12g0267 947 Pfam Leucine rich repeat 97 157 IPR001611 GO:0005515(InterPro)
Lac12g0267 947 SUPERFAMILY Protein kinase-like (PK-like) 322 560 IPR011009 -
Lac12g0267 947 Gene3D Phosphorylase Kinase; domain 1 310 417 - -
Lac12g0267 947 MobiDBLite consensus disorder prediction 204 223 - -
Lac12g0267 947 ProSiteProfiles Protein kinase domain profile. 341 610 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g0267 947 SUPERFAMILY L domain-like 32 203 - -
Lac12g0267 947 Gene3D Transferase(Phosphotransferase) domain 1 418 607 - -
Lac12g0267 947 Gene3D Transferase(Phosphotransferase) domain 1 811 914 - -
Lac12g0267 947 SMART serkin_6 341 610 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2599 Lac-Chr10:40011142 Lac12g0267 Lac-Chr12:2947561 2.60E-30 dispersed
Lac12g0267 Lac-Chr12:2947561 Lac5g2713 Lac-Chr5:45595236 2.90E-166 dispersed
Lac12g0267 Lac-Chr12:2947561 Lac2g2300 Lac-Chr2:31343464 1.10E-165 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85783 PF00069 Pkinase 2.60E-44 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0267 K13416 - csv:101216386 831.632