Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac12g0267 | ATGAGAAACAATGAAATGGACAGAGCAAAGTCGGTGTTCTCTGCCCTCTTGCTTTTTCTGCGATTGGGCTTCATTTTACGGGTGTCTGCTAATGGTGAAGGTGATGCCCTAAATGCCTTCAAGTTGGGTTTGGTGGATCCTAACAATGTCTTGCAAAGTTGGAATCCCATACTTATAAATCCTTGCACATGGTTTCATGTTACATGTGATGAAAACGAAAGTGTTATACGAGTTGATCTTGGTAATGCGAATCTTTCTGGGAAATTGGTTCCACAGCTTGATCAACTCACAAACTTGCAGCATTTGGGACTTTACAGCAATAACCTCAGAGGAACAATTCCAGAACGGTTTGGAAATTTGAAAAACTTGGAGAGCCTGGATCTTTATTCTAACAGTTTAACTGGTCCCATACCTGACTCTCTGGGCAAGCTTACAAACTTAAGTAGCTTGCGTCTGAACAACAATAGTTTGTCGGGAACCATTCCAATGTCTTTAACCACTGTTCCACTTCAAGTTCTGGATCTTTCAAATAACCTTCTAACAGGAGACATTCCAGTCAATGGTTCGTTCTCTCGTTTTACACCAATCAGTTTTGCTAATAATCCTCTTGATATTTCTCCCTCCGCTCCATCTCCTCCAAGGACAGATGCAACACGAACATCTTCAGTTTCAACCAACTGCAAGCGTCAATCAAAAGTTCTCTGCATATTAGAAGCTTCTGCCTCCATGAGAGAAAGAAAATCCAATTTTCTTGAAGGCCTGGGATCTGGACGCTCTGATACCAACTTGATATCATGGCATATTGTTGCTCCAGGTGATGGTGCTAATGGAGTTATTGTTGGAGCAATTGTTGCCGCTGCTGCTTTGCTGATTGTTGTGCCTGCTATTGCATTTACTCTTTGGCGACGAAAAAATCGACCAGATCATTTCTTTGATGTACCTGCCGAAGAAGATCCAGAAGTTAACCTGGGGCAGCTCAAAAAATATTCTCTACGCGAGCTGCAAGTTGCCACTGATTATTTTAGCCAACAGAACATTTTGGGCAAAGGTGGATTTGGCAAGGTCTATAAAGGTCGTTTGGCTGATGGTTCTCTTGTGGCTGTAAAACGACTGAAAGAGGAGCGTGCCGAGGGTGGGGAGCTTCAATTTCAGACTGAAGTAGAGATGATCAGCATGGCTGTCCATCGTAATCTGCTTCGTCTAAATGGGTTTTGCATGTCACCAACTGAACGATTGCTTGTCTATCCCTATATGGCTAATGGAAGTTTAGCATCATGTTTAAGAGAGCGTAAGCAATGCCCGCCACTCAACTGGGCAATACGTAAACGAGTTGCTTTGGGGGCTGCACGGGGACTTGAATATTTGCATAATCATTGTGATCCTAAAATTATTCACCGTGATGTGAAAGCTGCAAATATATTATTAGATGATGAATTTGAGGCTGTTGTTGGTGATTTTGGGTTGGCTAAACTCATGAACTACAAGGATACTCATGTTACAACTGCTGTTCGTGGAACAATTGGGCATATAGCGCCTGAGTACCTCTCGTCTGGAAAGTCTTCTGAAAAAACTGATGTTTTTGGTTATGGAGTAATGCTTCTTGAACTTGTAACTGGACAGAAAGCCTTTGATCTTGCTCGGCTAGCAAAAGATGACGATGTCATGTTGCTTGATTGGGCGGCTGATGCTTTATCCAGAGTGCCACATGAGATAGAGTTGTCGAATATATCTGTTCCATCCATCATCGATCTGGTGATAGTTCAAAAAGAAGTGGAGGAAGATCCTGAATTAGTCAAGGTACAACAAGAGATTGAAGCGGATCCCCTATTGCACACGAAGTTCTCCAACAAACAGGGCAAGTTACTTTACAAGGAACGATTTGTACGGTTTGCCAATGAAATAAGACCAACACGATGTCTCCAGCTGGGTTGCTGCAGCCATTACCTATTCTCAAACGAATTTGGAAAGATATATCAATGGATTTCATTGAAGCACTGCCACGTTCTAAAGGCTTCAGAGAACTCAGCTCAAGAAGAGCACGACTTTTCATCCCTAAACTTACAGCCAAATGGAGAGGGTGAATCGTTGTGTGGAGAACTATCTACGTTGTTTTTGTGGTGGAGCAACCAAAGAAATGGGAGCAATGGTTATCTTGGACGGGGAGTATTGTGTAGATCAGCACTTAGTGGAAAGAGATCAAATGATCAAGGTGCTGAAGGAACATCTCGGAATTGCATAGAACCGAATGAAGAGACAGTGATAGAGAAGATTGGCGAAGTTGCATACCGTCTGGAACTGCCACCGAAGGCTAATATACACAATGTTTTACATGTATCTCAGCTGAAGAAGGTGCTTAGGGAATGGCAGTTTACACAATCACAGGGATCAATATTTACAGAGGACTATGAATGTCAAGTGGCAGGACAAGCCGTATTGCGATGCAACATGGGAAGAGGTCGAGTTCATCCGGAAGCTTCTTCTTTCCATCTTGAGGACAAGGTGCCCATCAACCTTGGGGTAAAAGGGCTTCTAAGTGATAAGAAACTGGAAACGTTGGTCGACTCCGATCTTCGGGGCAATTACGTAGAGGAAGAACTGGAGCAGCTAATTCAAGTTGCACTACTTTGCACACAAAGCTCCCCTGTGGAGAGACCTAAGATGTCAGAGGTGTTGCAAATGCTGGAAGGCGATGGTTTGGCTGAAAGATGGGAGGAATGGCAGAAAGAAGAGAACTCACGCCAAAACTTTGACATTATGGTCCATTCTTACCACCAGAGTACAACTCCTCAGGTTTTTGATTCCACCTCTCGTATTGATCCTGATGTGTTGTCTGGTCCAAGATGA | 2844 | 43.28 | MRNNEMDRAKSVFSALLLFLRLGFILRVSANGEGDALNAFKLGLVDPNNVLQSWNPILINPCTWFHVTCDENESVIRVDLGNANLSGKLVPQLDQLTNLQHLGLYSNNLRGTIPERFGNLKNLESLDLYSNSLTGPIPDSLGKLTNLSSLRLNNNSLSGTIPMSLTTVPLQVLDLSNNLLTGDIPVNGSFSRFTPISFANNPLDISPSAPSPPRTDATRTSSVSTNCKRQSKVLCILEASASMRERKSNFLEGLGSGRSDTNLISWHIVAPGDGANGVIVGAIVAAAALLIVVPAIAFTLWRRKNRPDHFFDVPAEEDPEVNLGQLKKYSLRELQVATDYFSQQNILGKGGFGKVYKGRLADGSLVAVKRLKEERAEGGELQFQTEVEMISMAVHRNLLRLNGFCMSPTERLLVYPYMANGSLASCLRERKQCPPLNWAIRKRVALGAARGLEYLHNHCDPKIIHRDVKAANILLDDEFEAVVGDFGLAKLMNYKDTHVTTAVRGTIGHIAPEYLSSGKSSEKTDVFGYGVMLLELVTGQKAFDLARLAKDDDVMLLDWAADALSRVPHEIELSNISVPSIIDLVIVQKEVEEDPELVKVQQEIEADPLLHTKFSNKQGKLLYKERFVRFANEIRPTRCLQLGCCSHYLFSNEFGKIYQWISLKHCHVLKASENSAQEEHDFSSLNLQPNGEGESLCGELSTLFLWWSNQRNGSNGYLGRGVLCRSALSGKRSNDQGAEGTSRNCIEPNEETVIEKIGEVAYRLELPPKANIHNVLHVSQLKKVLREWQFTQSQGSIFTEDYECQVAGQAVLRCNMGRGRVHPEASSFHLEDKVPINLGVKGLLSDKKLETLVDSDLRGNYVEEELEQLIQVALLCTQSSPVERPKMSEVLQMLEGDGLAERWEEWQKEENSRQNFDIMVHSYHQSTTPQVFDSTSRIDPDVLSGPR | 947 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 2947561 | 2961440 | + | Lag0014639.1 | Lac12g0267 | 588864 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac12g0267 | 947 | Pfam | Protein kinase domain | 342 | 545 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac12g0267 | 947 | Pfam | Leucine Rich Repeat | 170 | 186 | IPR001611 | GO:0005515(InterPro) | |
Lac12g0267 | 947 | ProSitePatterns | Protein kinases ATP-binding region signature. | 347 | 369 | IPR017441 | GO:0005524(InterPro) | |
Lac12g0267 | 947 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 809 | 919 | - | - | |
Lac12g0267 | 947 | FunFam | Somatic embryogenesis receptor kinase 1 | 29 | 215 | - | - | |
Lac12g0267 | 947 | Gene3D | Ribonuclease Inhibitor | 30 | 209 | IPR032675 | - | |
Lac12g0267 | 947 | FunFam | Protein NSP-INTERACTING KINASE 1 | 418 | 564 | - | - | |
Lac12g0267 | 947 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 463 | 475 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac12g0267 | 947 | Pfam | Leucine rich repeat N-terminal domain | 31 | 70 | IPR013210 | - | |
Lac12g0267 | 947 | FunFam | Somatic embryogenesis receptor kinase 1 | 310 | 417 | - | - | |
Lac12g0267 | 947 | Pfam | Leucine rich repeat | 97 | 157 | IPR001611 | GO:0005515(InterPro) | |
Lac12g0267 | 947 | SUPERFAMILY | Protein kinase-like (PK-like) | 322 | 560 | IPR011009 | - | |
Lac12g0267 | 947 | Gene3D | Phosphorylase Kinase; domain 1 | 310 | 417 | - | - | |
Lac12g0267 | 947 | MobiDBLite | consensus disorder prediction | 204 | 223 | - | - | |
Lac12g0267 | 947 | ProSiteProfiles | Protein kinase domain profile. | 341 | 610 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac12g0267 | 947 | SUPERFAMILY | L domain-like | 32 | 203 | - | - | |
Lac12g0267 | 947 | Gene3D | Transferase(Phosphotransferase) domain 1 | 418 | 607 | - | - | |
Lac12g0267 | 947 | Gene3D | Transferase(Phosphotransferase) domain 1 | 811 | 914 | - | - | |
Lac12g0267 | 947 | SMART | serkin_6 | 341 | 610 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g2599 | Lac-Chr10:40011142 | Lac12g0267 | Lac-Chr12:2947561 | 2.60E-30 | dispersed | |
Lac12g0267 | Lac-Chr12:2947561 | Lac5g2713 | Lac-Chr5:45595236 | 2.90E-166 | dispersed | |
Lac12g0267 | Lac-Chr12:2947561 | Lac2g2300 | Lac-Chr2:31343464 | 1.10E-165 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85783 | PF00069 | Pkinase | 2.60E-44 | CL0016 | Lac | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac12g0267 | K13416 | - | csv:101216386 | 831.632 |