Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0275 ATGGCGAAATTCATGATCATGATTCTCAATCTCTTGCTGTTGATCTTCAGCTGCTTTGTAGCCATTTCTCAAGCGCAACTGAAGTTTGGATTCTATGCTCAAACTTGTCCTTCTGCCGAATCCGTCGTTCGCTCCGTCGTCAACGACGCCGTTCGCAACAATGCCAACATGGCCGCCGTGCTGCTCCGCCTCCATTTCCACGACTGCTTCGTTGAGGGTTGCGACGGTTCGATCTTGATCGACGGTCAGAATGCCGAGAAACACGCTTTTGGGCATCAAGGGGTGGGGGGGTTCGAGGTAATAGAGAGAGCAAAGGGAGCATTGGAAGCACAATGTCCGGGGGTGGTTTCTTGTGCTGACATCGTCGCTATGGCTGCAAGAGACGCTGTCGTTATGGCAAATGGACCGGAGTACGAGGTTCTTACCGGTCGGAGAGACGGTCGGGTTTCCGACGTTTCTCTGGCGGATGAGCTGCCGGATGTGAGTGATTCAGTTCAAGTTTTGAAGAACAAATTTGGACAGAAAGGGATGACTGACAAAGACTTGGTTTTACTGAGTGCGGCACACACAATCGGAACGACTGCATGTTTCTTCATGACAAAACGCCTCTACGACTTCTTCCCGGGCGGCGGATCGGACCCGGACATAAGCCCGACGCTGCTGCCGGAGCTGAAGTCGCAATGCCCTCGAAACGGCGACGTCAACGTTCGCCTCGGCATCGACCACGGCAGCCCCCGCACCTTCGACGTTCACATTCTCCAAAACATAAGAGATGGCTTCGCCGTGCTCGCCTCCGACGCGCGCCTAAACGACGACGCATCGACCCGAGCAGTGATCGACTCGTACTTCAGCCCCCTGGCCCCCATTCTTGGCCCTTCATTTCAGGATGATTTTGTGAACTCCATGGTTAGAATGGGACAGATTGGGACCAAAACTGGCTCACAAGGAGAGATTAGAAGGGTATGTTCTGCTTTTAACTGA 981 53.41 MAKFMIMILNLLLLIFSCFVAISQAQLKFGFYAQTCPSAESVVRSVVNDAVRNNANMAAVLLRLHFHDCFVEGCDGSILIDGQNAEKHAFGHQGVGGFEVIERAKGALEAQCPGVVSCADIVAMAARDAVVMANGPEYEVLTGRRDGRVSDVSLADELPDVSDSVQVLKNKFGQKGMTDKDLVLLSAAHTIGTTACFFMTKRLYDFFPGGGSDPDISPTLLPELKSQCPRNGDVNVRLGIDHGSPRTFDVHILQNIRDGFAVLASDARLNDDASTRAVIDSYFSPLAPILGPSFQDDFVNSMVRMGQIGTKTGSQGEIRRVCSAFN 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3036809 3041271 - Lag0014647.1 Lac12g0275 588872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0275 326 ProSitePatterns Peroxidases proximal heme-ligand signature. 181 191 IPR019793 -
Lac12g0275 326 Gene3D - 30 326 - -
Lac12g0275 326 PRINTS Haem peroxidase superfamily signature 241 256 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0275 326 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0275 326 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0275 326 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0275 326 PRINTS Haem peroxidase superfamily signature 181 196 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0275 326 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601(InterPro)
Lac12g0275 326 Gene3D Peroxidase, domain 2 159 305 - -
Lac12g0275 326 FunFam Peroxidase 30 178 - -
Lac12g0275 326 FunFam Peroxidase 159 305 - -
Lac12g0275 326 SUPERFAMILY Heme-dependent peroxidases 26 326 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0275 326 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Lac12g0275 326 PRINTS Plant peroxidase signature 300 313 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0275 326 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0275 326 PRINTS Plant peroxidase signature 180 192 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0275 326 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0275 326 PRINTS Plant peroxidase signature 255 272 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0275 326 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0275 326 PRINTS Plant peroxidase signature 239 254 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0275 326 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0275 326 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0275 326 ProSiteProfiles Plant heme peroxidase family profile. 26 326 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0275 326 PANTHER PEROXIDASE 25-RELATED 19 322 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Lac12g0275 326 CDD secretory_peroxidase 26 325 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lac12g0275 326 Pfam Peroxidase 43 282 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0275 Lac-Chr12:3036809 Lac3g0810 Lac-Chr3:6451293 2.70E-87 dispersed
Lac12g0275 Lac-Chr12:3036809 Lac12g0621 Lac-Chr12:6575020 1.80E-59 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0275 K00430 - csv:101221831 503.056