Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0288 ATGGCAGATGGTGAAGATATCCAGCCTCTTGTCTGTGATAATGGAACTGGAATGGTCAAGGCTGGATTTGCCGGTGACGATGCTCCAAGGGCTGTGTTTCCTAGTATCGTCGGCAGACCACGTCATACCGGTGTGATGGTTGGAATGGGCCAGAAGGATGCCTATGTTGGGGATGAAGCTCAATCGAAAAGAGGTATTCTTACATTGAAATACCCAATTGAGCATGGTATTGTAAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACCTTCTACAATGAGCTTCGTGTTGCTCCCGAAGAGCATCCAATACTTCTTACTGAAGCACCACTTAACCCAAAAGCAAACAGGGAGAAGATGACTCAGATCATGTTCGAAACCTTCGACGTCCCCGCTATGTATGTTGCAATCCAGGCTGTTTTATCTCTCTATGCCAGTGGTCGGACAACAGGTATTGTGTTGGATTCTGGTGACGGAGTGAGTCACACAGTGCCGATATACGAGGGGTTCTCGCTCCCCCATGCAATCCTACGTCTCGACCTTGCCGGTCGTGATCTGACTGATGCTTTGATGAAAATTCTTACCGAAAGAGGTTACATGTTCACGACAACAGCCGAGCGGGAAATTGTCCGTGATGTGAAGGAGAAGCTTGCATATGTGGCCCTTGATTATGAGCAAGAACTGGAGACAGCCAGGACTAGTTCAGCCATCGAGAAAAGCTACGAACTACCAGACGGGCAGGTGATTACAATCGGAGCTGAGAGATTCCGTTGCCCAGAAGTACTTTTCCAGCCATCTCTGATAGGCATGGAATCTCCTGGGATCCACGAAACCACATACAACTCCATCATGAAGTGTGATGTTGATATCAGGAAGGACTTGTACGGTAACATCGTCCTCAGTGGTGGTACGACAATGTTCCCCGGCATTGCGGATCGGATGAGCAAAGAAATCACAGCTCTTGCTCCCAGCAGCATGAAGATTAAGGTGGTTGCTCCTCCAGAAAGGAAGTACAGTGTTTGGATTGGAGGATCCATCCTAGCATCCCTCAGTACCTTCCAACAGATGTGGATCACAAAGGCCGAATACGACGAGTCGGGTCCCGCTATTGTTCACAGGAAATGCTTCTAA 1134 48.32 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFDVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDVKEKLAYVALDYEQELETARTSSAIEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMESPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKAEYDESGPAIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3204737 3207235 - Lag0014660.1 Lac12g0288 588885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0288 377 Gene3D - 10 371 - -
Lac12g0288 377 SMART actin_3 7 377 IPR004000 -
Lac12g0288 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Lac12g0288 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Lac12g0288 377 PANTHER ACTIN 8 369 IPR004000 -
Lac12g0288 377 Pfam Actin 5 377 IPR004000 -
Lac12g0288 377 FunFam Major actin 261 340 - -
Lac12g0288 377 FunFam Actin, muscle 182 273 - -
Lac12g0288 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Lac12g0288 377 FunFam Actin, alpha skeletal muscle 36 73 - -
Lac12g0288 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Lac12g0288 377 Gene3D - 140 340 - -
Lac12g0288 377 PRINTS Actin signature 51 62 IPR004000 -
Lac12g0288 377 PRINTS Actin signature 238 254 IPR004000 -
Lac12g0288 377 PRINTS Actin signature 63 85 IPR004000 -
Lac12g0288 377 PRINTS Actin signature 142 161 IPR004000 -
Lac12g0288 377 PRINTS Actin signature 117 130 IPR004000 -
Lac12g0288 377 PRINTS Actin signature 28 37 IPR004000 -
Lac12g0288 377 FunFam Actin, alpha skeletal muscle 3 175 - -
Lac12g0288 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Lac12g0288 377 FunFam Putative actin-related protein 5 341 369 - -
Lac12g0288 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Lac12g0288 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2624 Lac-Chr10:40365596 Lac12g0288 Lac-Chr12:3204737 1.30E-210 dispersed
Lac12g0288 Lac-Chr12:3204737 Lac8g2518 Lac-Chr8:42999092 3.50E-200 dispersed
Lac12g0288 Lac-Chr12:3204737 Lac1g2407 Lac-Chr1:45486567 2.40E-212 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0288 K10355 - csv:101214459 755.362