Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac12g0288 | ATGGCAGATGGTGAAGATATCCAGCCTCTTGTCTGTGATAATGGAACTGGAATGGTCAAGGCTGGATTTGCCGGTGACGATGCTCCAAGGGCTGTGTTTCCTAGTATCGTCGGCAGACCACGTCATACCGGTGTGATGGTTGGAATGGGCCAGAAGGATGCCTATGTTGGGGATGAAGCTCAATCGAAAAGAGGTATTCTTACATTGAAATACCCAATTGAGCATGGTATTGTAAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACCTTCTACAATGAGCTTCGTGTTGCTCCCGAAGAGCATCCAATACTTCTTACTGAAGCACCACTTAACCCAAAAGCAAACAGGGAGAAGATGACTCAGATCATGTTCGAAACCTTCGACGTCCCCGCTATGTATGTTGCAATCCAGGCTGTTTTATCTCTCTATGCCAGTGGTCGGACAACAGGTATTGTGTTGGATTCTGGTGACGGAGTGAGTCACACAGTGCCGATATACGAGGGGTTCTCGCTCCCCCATGCAATCCTACGTCTCGACCTTGCCGGTCGTGATCTGACTGATGCTTTGATGAAAATTCTTACCGAAAGAGGTTACATGTTCACGACAACAGCCGAGCGGGAAATTGTCCGTGATGTGAAGGAGAAGCTTGCATATGTGGCCCTTGATTATGAGCAAGAACTGGAGACAGCCAGGACTAGTTCAGCCATCGAGAAAAGCTACGAACTACCAGACGGGCAGGTGATTACAATCGGAGCTGAGAGATTCCGTTGCCCAGAAGTACTTTTCCAGCCATCTCTGATAGGCATGGAATCTCCTGGGATCCACGAAACCACATACAACTCCATCATGAAGTGTGATGTTGATATCAGGAAGGACTTGTACGGTAACATCGTCCTCAGTGGTGGTACGACAATGTTCCCCGGCATTGCGGATCGGATGAGCAAAGAAATCACAGCTCTTGCTCCCAGCAGCATGAAGATTAAGGTGGTTGCTCCTCCAGAAAGGAAGTACAGTGTTTGGATTGGAGGATCCATCCTAGCATCCCTCAGTACCTTCCAACAGATGTGGATCACAAAGGCCGAATACGACGAGTCGGGTCCCGCTATTGTTCACAGGAAATGCTTCTAA | 1134 | 48.32 | MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFDVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDVKEKLAYVALDYEQELETARTSSAIEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMESPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKAEYDESGPAIVHRKCF | 377 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 3204737 | 3207235 | - | Lag0014660.1 | Lac12g0288 | 588885 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac12g0288 | 377 | Gene3D | - | 10 | 371 | - | - | |
Lac12g0288 | 377 | SMART | actin_3 | 7 | 377 | IPR004000 | - | |
Lac12g0288 | 377 | CDD | NBD_sugar-kinase_HSP70_actin | 10 | 183 | - | - | |
Lac12g0288 | 377 | ProSitePatterns | Actins and actin-related proteins signature. | 106 | 118 | IPR020902 | - | |
Lac12g0288 | 377 | PANTHER | ACTIN | 8 | 369 | IPR004000 | - | |
Lac12g0288 | 377 | Pfam | Actin | 5 | 377 | IPR004000 | - | |
Lac12g0288 | 377 | FunFam | Major actin | 261 | 340 | - | - | |
Lac12g0288 | 377 | FunFam | Actin, muscle | 182 | 273 | - | - | |
Lac12g0288 | 377 | ProSitePatterns | Actins signature 1. | 55 | 65 | IPR004001 | - | |
Lac12g0288 | 377 | FunFam | Actin, alpha skeletal muscle | 36 | 73 | - | - | |
Lac12g0288 | 377 | SUPERFAMILY | Actin-like ATPase domain | 149 | 377 | IPR043129 | - | |
Lac12g0288 | 377 | Gene3D | - | 140 | 340 | - | - | |
Lac12g0288 | 377 | PRINTS | Actin signature | 51 | 62 | IPR004000 | - | |
Lac12g0288 | 377 | PRINTS | Actin signature | 238 | 254 | IPR004000 | - | |
Lac12g0288 | 377 | PRINTS | Actin signature | 63 | 85 | IPR004000 | - | |
Lac12g0288 | 377 | PRINTS | Actin signature | 142 | 161 | IPR004000 | - | |
Lac12g0288 | 377 | PRINTS | Actin signature | 117 | 130 | IPR004000 | - | |
Lac12g0288 | 377 | PRINTS | Actin signature | 28 | 37 | IPR004000 | - | |
Lac12g0288 | 377 | FunFam | Actin, alpha skeletal muscle | 3 | 175 | - | - | |
Lac12g0288 | 377 | ProSitePatterns | Actins signature 2. | 358 | 366 | IPR004001 | - | |
Lac12g0288 | 377 | FunFam | Putative actin-related protein 5 | 341 | 369 | - | - | |
Lac12g0288 | 377 | Gene3D | Actin; Chain A, domain 4 | 182 | 273 | - | - | |
Lac12g0288 | 377 | SUPERFAMILY | Actin-like ATPase domain | 6 | 155 | IPR043129 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g2624 | Lac-Chr10:40365596 | Lac12g0288 | Lac-Chr12:3204737 | 1.30E-210 | dispersed | |
Lac12g0288 | Lac-Chr12:3204737 | Lac8g2518 | Lac-Chr8:42999092 | 3.50E-200 | dispersed | |
Lac12g0288 | Lac-Chr12:3204737 | Lac1g2407 | Lac-Chr1:45486567 | 2.40E-212 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac12g0288 | K10355 | - | csv:101214459 | 755.362 |