Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0289 ATGGGGCTGAGTCCAACCATACTTTGCCTCATTCCGCCACCAGAGCAGCCATGTTGGTTAGAATCAACACTCTCCTCCAAGGCTATTCAGGCATCAGATTTGAGATCTTGGAAGCCATCACTAGTCTTCTCAACCACAATGTCACCCTTGTTTGCCATTACGGGGCACAATTACAGCATCTGGGGATTTGGGCTCGCTCTCGTCAATGGCACTGCTGTTGGTTCTGGGCTCGCCTCTATTGTTCTCTTCGAGGCAAATATTTTGGCTGTTTTGTCAGAAATTTTATCAGCTATTTTTGCTGAAGTCATGCAAGGAAAACCAGAGTTCACCGATCATTTGACCCACAAGTTGAAGCACCACCCTGGTCAAATTGAAGCTGCAGCAATCATGGAACATATTTTGGATGGAAGCTCAACTTCACCTCAATGGCTTGGTCCTCTAATCGAAGTGATTCGATTTTCCACCAAGTCTATCGAGCGAGAGATCAATTCAGTAAACGACAACCCTTTGATTGATGTTTCAAGAAATAAGGCACTGCATGGAGGCAACTTTCAAGGAACACCCATCGGAGTTTCCATGGACAACACTCGCTTGGCCATTGCATCGATTGGAAAGCTCATGTTTGCCCAATTTTCAGAACTTGTCAATGATTTTTACAACAATGGTTTGCCTTCCAATCTTTCGGCCAGTAGAAACCCAAGCTTAGATTATGGGTTTAAAGGTGCTGAAATTGCTATGGCTTCATACTGCTCCGAGCTTCAATATCTGGCAAATCCTGTGACAAGTCATGTTCAAAGTGCTGAGCAACACAATCAAGATGTCAACTCCCTTGGTTTAATCTCTTCGAGGAAGACAGCTGAAGCCATTGACATTTTGAAACTCATGTCTTCCACATTTTTGGTTGCACTCTGCCAAGCAATTGACTTGAGGCATTTGGAGGAAAACTTGAAAAGTACTGTTAAAAGTACTGTTCTTGTTGAACATGCACTCACCAATGGCGACAATGAAAAGAACACAAATACTTCCATCTTCCAAAAGATTGATGCTTTCGAAAAGGAGTTAAAGGAAGTTCTACCAAGGGAAGTGGAAAATGCAAGGTTGGCATATGAGAGTGGAAATTCCAAAATTGAAAATCAAATCAAGGATTGTAGATCTTATCCACTATACAAGTTTGTGAGAGAAGAACTAGGAACAAAATTGCTGACCGGAGAAAAGTAA 1218 42.36 MGLSPTILCLIPPPEQPCWLESTLSSKAIQASDLRSWKPSLVFSTTMSPLFAITGHNYSIWGFGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSTVLVEHALTNGDNEKNTNTSIFQKIDAFEKELKEVLPREVENARLAYESGNSKIENQIKDCRSYPLYKFVREELGTKLLTGEK 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3216683 3218285 - Lag0014661.1 Lac12g0289 588886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0289 405 CDD PAL-HAL 64 310 IPR001106 -
Lac12g0289 405 PANTHER HISTIDINE AMMONIA-LYASE 64 324 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Lac12g0289 405 SUPERFAMILY L-aspartase-like 64 404 IPR008948 GO:0003824(InterPro)
Lac12g0289 405 Gene3D - 324 378 IPR023144 -
Lac12g0289 405 Gene3D - 313 323 IPR023144 -
Lac12g0289 405 Gene3D Fumarase/aspartase (Central domain) 72 138 - -
Lac12g0289 405 Gene3D Fumarase/aspartase (Central domain) 139 312 - -
Lac12g0289 405 Gene3D Fumarase/aspartase (Central domain) 379 405 - -
Lac12g0289 405 Pfam Aromatic amino acid lyase 64 316 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0289 Lac-Chr12:3216683 Lac7g1463 Lac-Chr7:15331944 1.70E-171 dispersed
Lac12g0289 Lac-Chr12:3216683 Lac12g0290 Lac-Chr12:3222064 1.80E-173 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0289 K10775 - csv:101203846 565.074