Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0290 ATGGCACCTGGATTTGACTTGCACCAAAAAGAGAGCTTATGCAGCGCCCCTCACAGTCAGGATCCCCTCAACTGGGGGCTGGCGGCCGACTCCCTCAAGGGAAGCCATCTCGATGAGGTGAAGCGCATGGTGGAAGAGTTTCGGAGGCCTTTGGTGAAGCTTGGAGGACAGACCCTCACCATTTCCCAAGTGGCTGCCATTGCCACTCGTGATAATGATGTGATGGTTGAGTTGGCCGAGTCTGCCAGAGCTGGCGTTAAAGCTAGTAGTGATTGGGTCATGGAGAGTATGAGTAAAGGCACTGATAGCTATGGTGTCACCACTGGATTTGGTGCCACCTCCCATAGAAGAACCAAGCAGGGTGGAGCTTTACAGAAGGAGCTTATTCGATTTCTCAATGCTGGCATCTTTGGAAATGGGGCTGAGTCCACTCACACTTTGCCTCACTCTGCCACCAGAGCAGCCATGTTGGTCAGAATCAACACTCTCCTTCAAGCATCTGGGGATTTGGTTCCTTTGTCATATATTGCTGGCCTACTAACGGGTCGTCACAATTCCAAAGCCATTGGACCAAATGGCGAAACCCTTGATGCCAAGGCTGCTTTTGAACAAGCAAGTATTCCATCTAGTTTCTTTGAGCTACAACCTAAGGAAGGTCTTGCACTTGTCAATGGCACTGCTGTCGGTTCTGGGCTTGCTTCCATTGTTCTCTTCGAGGCAAATATTTTGGCTGTTTTGTCAGAAATTCTATCTGCCATTTTTGCTGAAGTCATGCAAGGAAAGCCAGAGTTCACCGATCATTTGACCCACAAGTTGAAGCATCATCCTGGTCAAATTGAAGCCGCTGCAATCATGGAACACATCTTAGATGGAAGCTCTTACATGAAATCTGCAAAGAAGCTCCATGAGATTGATCCTCTCCAAAAGCCTAAACAAGATCGTTACGCGCTTAGAACTTCACCTCAATGGCTCGGTCCTCTGATTGAAGTAATTCGATTCTCTACCAAGTCTATCGAGCGAGAGATCAATTCAGTAAACGACAACCCTTTGATTGATGTGTCGAGAAATAAGGCCCTTCATGGAGGCAACTTCCAAGGAACACCCATTGGAGTTTCTATGGACAATACTCGTTTGGCCATAGCATCAATTGGGAAGCTTATGTTTGCCCAATTTTCAGAACTTGTCAATGATTTTTACAACAATGGTTTGCCTTCCAATCTTTCTGCCAGTAGAAATCCAAGTTTAGATTATGGTTTTAAAGGTGCTGAAATTGCCATGGCTTCATACTGCTCTGAGCTTCAGTACCTTGCAGATCCTGTAACAAGCCATGTGCAAAGTGCTGAACAACACAACCAAGATGTTAACTCCCTTGGTTTAATCTCTTCAAGGAAAACAGCTGAAGCTATTGACATTTTGAAACTCATGTCTTCCACATTTTTAGTTGCACTTTGCCAAGCAATTGATTTGAGGCATTTGGAAGAAAACTTGAAGAGCACTGTTAAAAGTACCGTAAGTCAAGTAGCCAAAAAAGTATTGACCACATCCTCTGATGGTGCACTTCACCCATCAAGATTTTGCGAGAAAGATTTACTTCAAGTCGTTGACAGAGAATACACTTTTGCATACATCGATGATCCATGCAGTGCAACTTATCCATTGATGCAAAAGCTGAGACAGGTTCTTGTTGAACATGCACTCACCAATGGTGACAATGAAAAGAACACAAACACTTCCATCTTCCAAAAGATTGGTGCTTTTGAAGAGGAGTTAAAGGCAATCCTACCAAGGGAAGTTGAAAATGCAAGGTTGGCATATGAGGATGGAAATTCTAAAATTGAAAATCAAATTAAGGATTGCAGATCTTATCCACTATACAAGTTTGTGAGAGAAGAGCTAGGAACAAAATTGTTGACGGGAGAAAAAGTAATATCTCCAGGAGAAGAGTGCGAGAAGGTGTTTGCAGCTTTGTGTCAAGGAAAGATGATCGACTCCATTCTAGAATGCTTGAAAGAATGGAATGGTGCTCCTATTCCTATTTGTTAA 2043 43.76 MAPGFDLHQKESLCSAPHSQDPLNWGLAADSLKGSHLDEVKRMVEEFRRPLVKLGGQTLTISQVAAIATRDNDVMVELAESARAGVKASSDWVMESMSKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGAESTHTLPHSATRAAMLVRINTLLQASGDLVPLSYIAGLLTGRHNSKAIGPNGETLDAKAAFEQASIPSSFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKSAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLADPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSTVSQVAKKVLTTSSDGALHPSRFCEKDLLQVVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALTNGDNEKNTNTSIFQKIGAFEEELKAILPREVENARLAYEDGNSKIENQIKDCRSYPLYKFVREELGTKLLTGEKVISPGEECEKVFAALCQGKMIDSILECLKEWNGAPIPIC 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3222064 3224201 + Lag0014662.1 Lac12g0290 588887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0290 680 FunFam Phenylalanine ammonia-lyase 493 614 - -
Lac12g0290 680 NCBIfam phenylalanine ammonia-lyase 165 670 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Lac12g0290 680 CDD PAL-HAL 57 490 IPR001106 -
Lac12g0290 680 Gene3D - 166 226 IPR024083 -
Lac12g0290 680 Gene3D - 14 165 IPR024083 -
Lac12g0290 680 Pfam Aromatic amino acid lyase 166 503 IPR001106 -
Lac12g0290 680 Pfam Aromatic amino acid lyase 59 165 IPR001106 -
Lac12g0290 680 PANTHER HISTIDINE AMMONIA-LYASE 16 166 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Lac12g0290 680 MobiDBLite consensus disorder prediction 1 20 - -
Lac12g0290 680 FunFam Phenylalanine ammonia-lyase 227 526 - -
Lac12g0290 680 Gene3D - 493 614 IPR023144 -
Lac12g0290 680 Gene3D Fumarase/aspartase (Central domain) 227 675 - -
Lac12g0290 680 SUPERFAMILY L-aspartase-like 21 680 IPR008948 GO:0003824(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0290 Lac-Chr12:3222064 Lac1g2142 Lac-Chr1:42854717 0.00E+00 dispersed
Lac12g0289 Lac-Chr12:3216683 Lac12g0290 Lac-Chr12:3222064 1.80E-173 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0290 K10775 - csv:116401606 1228.39