Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac12g0290 | ATGGCACCTGGATTTGACTTGCACCAAAAAGAGAGCTTATGCAGCGCCCCTCACAGTCAGGATCCCCTCAACTGGGGGCTGGCGGCCGACTCCCTCAAGGGAAGCCATCTCGATGAGGTGAAGCGCATGGTGGAAGAGTTTCGGAGGCCTTTGGTGAAGCTTGGAGGACAGACCCTCACCATTTCCCAAGTGGCTGCCATTGCCACTCGTGATAATGATGTGATGGTTGAGTTGGCCGAGTCTGCCAGAGCTGGCGTTAAAGCTAGTAGTGATTGGGTCATGGAGAGTATGAGTAAAGGCACTGATAGCTATGGTGTCACCACTGGATTTGGTGCCACCTCCCATAGAAGAACCAAGCAGGGTGGAGCTTTACAGAAGGAGCTTATTCGATTTCTCAATGCTGGCATCTTTGGAAATGGGGCTGAGTCCACTCACACTTTGCCTCACTCTGCCACCAGAGCAGCCATGTTGGTCAGAATCAACACTCTCCTTCAAGCATCTGGGGATTTGGTTCCTTTGTCATATATTGCTGGCCTACTAACGGGTCGTCACAATTCCAAAGCCATTGGACCAAATGGCGAAACCCTTGATGCCAAGGCTGCTTTTGAACAAGCAAGTATTCCATCTAGTTTCTTTGAGCTACAACCTAAGGAAGGTCTTGCACTTGTCAATGGCACTGCTGTCGGTTCTGGGCTTGCTTCCATTGTTCTCTTCGAGGCAAATATTTTGGCTGTTTTGTCAGAAATTCTATCTGCCATTTTTGCTGAAGTCATGCAAGGAAAGCCAGAGTTCACCGATCATTTGACCCACAAGTTGAAGCATCATCCTGGTCAAATTGAAGCCGCTGCAATCATGGAACACATCTTAGATGGAAGCTCTTACATGAAATCTGCAAAGAAGCTCCATGAGATTGATCCTCTCCAAAAGCCTAAACAAGATCGTTACGCGCTTAGAACTTCACCTCAATGGCTCGGTCCTCTGATTGAAGTAATTCGATTCTCTACCAAGTCTATCGAGCGAGAGATCAATTCAGTAAACGACAACCCTTTGATTGATGTGTCGAGAAATAAGGCCCTTCATGGAGGCAACTTCCAAGGAACACCCATTGGAGTTTCTATGGACAATACTCGTTTGGCCATAGCATCAATTGGGAAGCTTATGTTTGCCCAATTTTCAGAACTTGTCAATGATTTTTACAACAATGGTTTGCCTTCCAATCTTTCTGCCAGTAGAAATCCAAGTTTAGATTATGGTTTTAAAGGTGCTGAAATTGCCATGGCTTCATACTGCTCTGAGCTTCAGTACCTTGCAGATCCTGTAACAAGCCATGTGCAAAGTGCTGAACAACACAACCAAGATGTTAACTCCCTTGGTTTAATCTCTTCAAGGAAAACAGCTGAAGCTATTGACATTTTGAAACTCATGTCTTCCACATTTTTAGTTGCACTTTGCCAAGCAATTGATTTGAGGCATTTGGAAGAAAACTTGAAGAGCACTGTTAAAAGTACCGTAAGTCAAGTAGCCAAAAAAGTATTGACCACATCCTCTGATGGTGCACTTCACCCATCAAGATTTTGCGAGAAAGATTTACTTCAAGTCGTTGACAGAGAATACACTTTTGCATACATCGATGATCCATGCAGTGCAACTTATCCATTGATGCAAAAGCTGAGACAGGTTCTTGTTGAACATGCACTCACCAATGGTGACAATGAAAAGAACACAAACACTTCCATCTTCCAAAAGATTGGTGCTTTTGAAGAGGAGTTAAAGGCAATCCTACCAAGGGAAGTTGAAAATGCAAGGTTGGCATATGAGGATGGAAATTCTAAAATTGAAAATCAAATTAAGGATTGCAGATCTTATCCACTATACAAGTTTGTGAGAGAAGAGCTAGGAACAAAATTGTTGACGGGAGAAAAAGTAATATCTCCAGGAGAAGAGTGCGAGAAGGTGTTTGCAGCTTTGTGTCAAGGAAAGATGATCGACTCCATTCTAGAATGCTTGAAAGAATGGAATGGTGCTCCTATTCCTATTTGTTAA | 2043 | 43.76 | MAPGFDLHQKESLCSAPHSQDPLNWGLAADSLKGSHLDEVKRMVEEFRRPLVKLGGQTLTISQVAAIATRDNDVMVELAESARAGVKASSDWVMESMSKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGAESTHTLPHSATRAAMLVRINTLLQASGDLVPLSYIAGLLTGRHNSKAIGPNGETLDAKAAFEQASIPSSFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKSAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLADPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSTVSQVAKKVLTTSSDGALHPSRFCEKDLLQVVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALTNGDNEKNTNTSIFQKIGAFEEELKAILPREVENARLAYEDGNSKIENQIKDCRSYPLYKFVREELGTKLLTGEKVISPGEECEKVFAALCQGKMIDSILECLKEWNGAPIPIC | 680 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 3222064 | 3224201 | + | Lag0014662.1 | Lac12g0290 | 588887 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac12g0290 | 680 | FunFam | Phenylalanine ammonia-lyase | 493 | 614 | - | - | |
Lac12g0290 | 680 | NCBIfam | phenylalanine ammonia-lyase | 165 | 670 | IPR005922 | GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro) | |
Lac12g0290 | 680 | CDD | PAL-HAL | 57 | 490 | IPR001106 | - | |
Lac12g0290 | 680 | Gene3D | - | 166 | 226 | IPR024083 | - | |
Lac12g0290 | 680 | Gene3D | - | 14 | 165 | IPR024083 | - | |
Lac12g0290 | 680 | Pfam | Aromatic amino acid lyase | 166 | 503 | IPR001106 | - | |
Lac12g0290 | 680 | Pfam | Aromatic amino acid lyase | 59 | 165 | IPR001106 | - | |
Lac12g0290 | 680 | PANTHER | HISTIDINE AMMONIA-LYASE | 16 | 166 | IPR001106 | GO:0016841(PANTHER)|GO:0045548(PANTHER) | |
Lac12g0290 | 680 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Lac12g0290 | 680 | FunFam | Phenylalanine ammonia-lyase | 227 | 526 | - | - | |
Lac12g0290 | 680 | Gene3D | - | 493 | 614 | IPR023144 | - | |
Lac12g0290 | 680 | Gene3D | Fumarase/aspartase (Central domain) | 227 | 675 | - | - | |
Lac12g0290 | 680 | SUPERFAMILY | L-aspartase-like | 21 | 680 | IPR008948 | GO:0003824(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac12g0290 | Lac-Chr12:3222064 | Lac1g2142 | Lac-Chr1:42854717 | 0.00E+00 | dispersed | |
Lac12g0289 | Lac-Chr12:3216683 | Lac12g0290 | Lac-Chr12:3222064 | 1.80E-173 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac12g0290 | K10775 | - | csv:116401606 | 1228.39 |