Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0292 ATGGATCAATCAGAGCGTCAGCAACAATCACAGCAGCCTGCAGGTGGCGTCGGTGCAGGCCAGTTATCATATTCTAATCCTTACCAAACGGCGCCAATGGTCGCCTCCGGAACTCCTGCCGTTACGATTCCCCCAACTCAGCCACCGTCCAGTTTCTCTAATTCTCCACATCAGCTTGCCTATCAGCAAGCTCAGCACTTTCACCACCAGCAGCAACAGCAGCAGCAACAACAGCTCCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACTACTGACTTTAAGAACCACAGTCTCCCCCTCGCCCGAATCAAGAAAATAATGAAAGCGGATGAAGACGTCCGAATGATTTCAGCTGAAGCACCAGTTATATTCGCAAAGGCATGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACGTTACAGAAGAATGATATTGCAGCTGCAATTTCACGGACCGATGTCTTTGATTTCTTGGTCGATATTATTCCTAGAGATGAACTGAAAGAGGAAGGCCTCGGAATCACAAAAGCTTCTATTCCCGTAGTCGGTTCCCCTGCTGATCTTCCTTATTACTATGTTCCATCCCAGCATCCAGTTGGTGCTACAGGTATGATCATGGGGAAGCAATTAGATCAAGCAAACATGTACGGTGCTGCTTCCCAACAGCCCCGACCACCGATGCCTTTCATGCCATGGCCGCACACTCAAACTCAGCAGCAGCAACAAACTCAGCAGCAAAGTGATGCATAG 792 47.6 MDQSERQQQSQQPAGGVGAGQLSYSNPYQTAPMVASGTPAVTIPPTQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGAASQQPRPPMPFMPWPHTQTQQQQQTQQQSDA 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3250347 3251138 - Lag0014664.1 Lac12g0292 588889

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0292 263 MobiDBLite consensus disorder prediction 1 36 - -
Lac12g0292 263 Gene3D Histone, subunit A 61 178 IPR009072 GO:0046982(InterPro)
Lac12g0292 263 FunFam Nuclear transcription factor Y subunit gamma 66 178 - -
Lac12g0292 263 SUPERFAMILY Histone-fold 56 172 IPR009072 GO:0046982(InterPro)
Lac12g0292 263 MobiDBLite consensus disorder prediction 247 263 - -
Lac12g0292 263 Pfam Core histone H2A/H2B/H3/H4 53 163 IPR007125 GO:0003677(InterPro)
Lac12g0292 263 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 74 250 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Lac12g0292 263 MobiDBLite consensus disorder prediction 231 263 - -
Lac12g0292 263 MobiDBLite consensus disorder prediction 1 56 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0292 K08066 - - csv:101213813 411.764
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0292 Lac-Chr12:3250347 Lac3g2661 Lac-Chr3:41119549 1.80E-65 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac3g0076 . 116 300 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.5 1.3e-88 323.6
Lac3g2661 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.7 1.2e-52 204.1
Lac12g0292 . 79 222 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 1.5e-52 203.8
Lac3g2661 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.2 2.1e-54 209.9
Lac12g0292 . 19 177 CCAAT-HAP5 Transcription Factor Family AT1G08970 68.8 6.0e-49 191.8
Lac3g0076 . 116 214 CCAAT-HAP5 Transcription Factor Family AT1G08970 82.8 3.2e-42 169.5
Lac3g2661 . 1 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 57.6 6.4e-61 231.5
Lac12g0292 . 25 221 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 3.2e-52 202.6
Lac3g0076 . 116 274 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.1 7.8e-51 198.0
Lac3g0076 . 116 273 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.4 2.1e-37 153.3
Lac3g0076 . 116 300 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 1.1e-80 297.4
Lac3g2661 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.2 1.7e-49 193.7
Lac12g0292 . 79 230 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 2.9e-49 193.0
Lac12g0292 . 43 210 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.7 1.9e-64 243.0
Lac3g2661 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 69.0 7.2e-51 198.0
Lac3g0076 . 116 239 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 6.1e-50 194.9
Lac13g0807 . 1 280 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.0 9.5e-60 228.0
Lac9g2749 . 1 280 CCAAT-HAP5 Transcription Factor Family AT3G12480 50.5 3.0e-53 206.5
Lac6g0758 . 3 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 62.8 1.1e-36 150.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23011 PF00125 Histone 2.60E-18 CL0012 Lac TF