Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0292 ATGGATCAATCAGAGCGTCAGCAACAATCACAGCAGCCTGCAGGTGGCGTCGGTGCAGGCCAGTTATCATATTCTAATCCTTACCAAACGGCGCCAATGGTCGCCTCCGGAACTCCTGCCGTTACGATTCCCCCAACTCAGCCACCGTCCAGTTTCTCTAATTCTCCACATCAGCTTGCCTATCAGCAAGCTCAGCACTTTCACCACCAGCAGCAACAGCAGCAGCAACAACAGCTCCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACTACTGACTTTAAGAACCACAGTCTCCCCCTCGCCCGAATCAAGAAAATAATGAAAGCGGATGAAGACGTCCGAATGATTTCAGCTGAAGCACCAGTTATATTCGCAAAGGCATGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACGTTACAGAAGAATGATATTGCAGCTGCAATTTCACGGACCGATGTCTTTGATTTCTTGGTCGATATTATTCCTAGAGATGAACTGAAAGAGGAAGGCCTCGGAATCACAAAAGCTTCTATTCCCGTAGTCGGTTCCCCTGCTGATCTTCCTTATTACTATGTTCCATCCCAGCATCCAGTTGGTGCTACAGGTATGATCATGGGGAAGCAATTAGATCAAGCAAACATGTACGGTGCTGCTTCCCAACAGCCCCGACCACCGATGCCTTTCATGCCATGGCCGCACACTCAAACTCAGCAGCAGCAACAAACTCAGCAGCAAAGTGATGCATAG 792 47.6 MDQSERQQQSQQPAGGVGAGQLSYSNPYQTAPMVASGTPAVTIPPTQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGAASQQPRPPMPFMPWPHTQTQQQQQTQQQSDA 263
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 3250347 3251138 - Lag0014664.1 Lac12g0292 588889
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0292 263 MobiDBLite consensus disorder prediction 1 36 - -
Lac12g0292 263 Gene3D Histone, subunit A 61 178 IPR009072 GO:0046982(InterPro)
Lac12g0292 263 FunFam Nuclear transcription factor Y subunit gamma 66 178 - -
Lac12g0292 263 SUPERFAMILY Histone-fold 56 172 IPR009072 GO:0046982(InterPro)
Lac12g0292 263 MobiDBLite consensus disorder prediction 247 263 - -
Lac12g0292 263 Pfam Core histone H2A/H2B/H3/H4 53 163 IPR007125 GO:0003677(InterPro)
Lac12g0292 263 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 74 250 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Lac12g0292 263 MobiDBLite consensus disorder prediction 231 263 - -
Lac12g0292 263 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0292 Lac-Chr12:3250347 Lac3g2661 Lac-Chr3:41119549 1.80E-65 dispersed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23011 PF00125 Histone 2.60E-18 CL0012 Lac TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0292 K08066 - csv:101213813 411.764