Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac12g0292 | ATGGATCAATCAGAGCGTCAGCAACAATCACAGCAGCCTGCAGGTGGCGTCGGTGCAGGCCAGTTATCATATTCTAATCCTTACCAAACGGCGCCAATGGTCGCCTCCGGAACTCCTGCCGTTACGATTCCCCCAACTCAGCCACCGTCCAGTTTCTCTAATTCTCCACATCAGCTTGCCTATCAGCAAGCTCAGCACTTTCACCACCAGCAGCAACAGCAGCAGCAACAACAGCTCCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACTACTGACTTTAAGAACCACAGTCTCCCCCTCGCCCGAATCAAGAAAATAATGAAAGCGGATGAAGACGTCCGAATGATTTCAGCTGAAGCACCAGTTATATTCGCAAAGGCATGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACGTTACAGAAGAATGATATTGCAGCTGCAATTTCACGGACCGATGTCTTTGATTTCTTGGTCGATATTATTCCTAGAGATGAACTGAAAGAGGAAGGCCTCGGAATCACAAAAGCTTCTATTCCCGTAGTCGGTTCCCCTGCTGATCTTCCTTATTACTATGTTCCATCCCAGCATCCAGTTGGTGCTACAGGTATGATCATGGGGAAGCAATTAGATCAAGCAAACATGTACGGTGCTGCTTCCCAACAGCCCCGACCACCGATGCCTTTCATGCCATGGCCGCACACTCAAACTCAGCAGCAGCAACAAACTCAGCAGCAAAGTGATGCATAG | 792 | 47.6 | MDQSERQQQSQQPAGGVGAGQLSYSNPYQTAPMVASGTPAVTIPPTQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGAASQQPRPPMPFMPWPHTQTQQQQQTQQQSDA | 263 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 3250347 | 3251138 | - | Lag0014664.1 | Lac12g0292 | 588889 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac12g0292 | 263 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
| Lac12g0292 | 263 | Gene3D | Histone, subunit A | 61 | 178 | IPR009072 | GO:0046982(InterPro) | |
| Lac12g0292 | 263 | FunFam | Nuclear transcription factor Y subunit gamma | 66 | 178 | - | - | |
| Lac12g0292 | 263 | SUPERFAMILY | Histone-fold | 56 | 172 | IPR009072 | GO:0046982(InterPro) | |
| Lac12g0292 | 263 | MobiDBLite | consensus disorder prediction | 247 | 263 | - | - | |
| Lac12g0292 | 263 | Pfam | Core histone H2A/H2B/H3/H4 | 53 | 163 | IPR007125 | GO:0003677(InterPro) | |
| Lac12g0292 | 263 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 74 | 250 | IPR050568 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER) | |
| Lac12g0292 | 263 | MobiDBLite | consensus disorder prediction | 231 | 263 | - | - | |
| Lac12g0292 | 263 | MobiDBLite | consensus disorder prediction | 1 | 56 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac12g0292 | Lac-Chr12:3250347 | Lac3g2661 | Lac-Chr3:41119549 | 1.80E-65 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 23011 | PF00125 | Histone | 2.60E-18 | CL0012 | Lac | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac12g0292 | K08066 | - | csv:101213813 | 411.764 |