Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0300 ATGGACAACATCGCCGCCCAGCTCAAGCGGGGCATATCCCGTCAGTTCTCCACCGGCTCCCTCCGCCGGACCCTCTCCCGCCAGTTCTCCCGCCAGTCCTCTCTCGACCCACGTCGGAACAATCTCCGCTTCAGCTTCGGCCGCCAGTCCTCTCTCGACCCCATTCGCCGCTGCCCCGACGACGACAATGACCTCACCGTCCCCGAGAATCTCGACTCCACCATGCAGCTTCTCTTCATGGCCTGCCGTGGCGACGTCCGCGGCGTCGACGACTTGCTCAACGACGGCACCGACGTCAACAGCATCGACTTGGACGGCCGCACTGCTCTCCATATTGCCGCCTGCGAGGGCCATGCCGACGTTGTCAAGCTCCTTCTCAGCCGCAGGGCTAACATCGACGCCCGTGATCGTTGGGGGAGTACGGCTGCTGCTGATGCTAAGTATTATGGGAATACCGAAATTTACAACATTCTCAAGGCACGTGGAGCCAAAGTTCCGAAATTTAGGAAGACGCCAATGACTGTTGCAAATCCTAGGGAAGTTCCAGAGTACGAGCTTAATCCATTGGAGCTCCAGATTCGAAGGAGCGACGGTATATCAAAGGGGGCATATCAAGTTGCCAAATGGAATGGTACAAAAGTAGCCGTGAAAATTCTTGATAAAGATTGTTATTGTAACCCGGATTCTATAAATGCATTCAAACATGAGTTAACATTATTGGAAAAGGTTCGACATCCTAACGTAGTTCAGTTTGTTGGCGCCGTTACTCAGAATTTGCCGATGATGATCGTTTCCGAATACCACCCAAAGGGTGATTTAGGTTGCTATCTTCAAAAGAAAGGTCGTCTATCTCCATCTAAAGCCTTAAGATTCGCCCTCGACATCGCTAGGGGAATGAACTATCTTCACGAATGCAAACCGGATCCGATTATCCACTGTGATTTAAAGCCAAAAAATATTTTGCTGGATAATGGAGGACAACTCAAGGTTGCTGGATTTGGCTTGATAAGATTGTCAAAAATGTCCCCCGACAAAGCAAAACTAGCTCAGCCAGTGGTTATTGACTATTCGAACTTGTACTTAGCACCCGAGATTTACAACGATGAAATATTTGATAGAAGCGTCGATGCATTTTCGTTCGGTCTTATTCTATACGAGATGGTTGAGGGTATTCAGCCATTCCATCCCAGACCTCCAGAAGAGGTTGCCAAAGCTATTTGTATAGAAGGAAAGAGACCTCCATTTAAGATCAAATCGAAAAGTTATCCACCTGATCTAAAAGAATTGATTGAAGAATGCTGGGATCCAGAACCTGTTGTGAGGCCTACTTTCTCTGAAATTATTGTAAGGTTGGATAAAATAGTTGCCAACTGCTCAAAACAAGGATGGTGGAAAGACACATTTAAACTTCCCTGGAGTGTTGAAGTCTTGAAGAGTGTTGGGTCTTCGAGAAGTGTTGAAGTCTTGAAGAGTGTTGGGTCTTCAAAAAGTGTTCAACACTTGGACTTATGGATTGCAGAGAGTCTTCGGTCTTCAGACTTGGTGGAGTCTCTCTGA 1557 47.66 MDNIAAQLKRGISRQFSTGSLRRTLSRQFSRQSSLDPRRNNLRFSFGRQSSLDPIRRCPDDDNDLTVPENLDSTMQLLFMACRGDVRGVDDLLNDGTDVNSIDLDGRTALHIAACEGHADVVKLLLSRRANIDARDRWGSTAAADAKYYGNTEIYNILKARGAKVPKFRKTPMTVANPREVPEYELNPLELQIRRSDGISKGAYQVAKWNGTKVAVKILDKDCYCNPDSINAFKHELTLLEKVRHPNVVQFVGAVTQNLPMMIVSEYHPKGDLGCYLQKKGRLSPSKALRFALDIARGMNYLHECKPDPIIHCDLKPKNILLDNGGQLKVAGFGLIRLSKMSPDKAKLAQPVVIDYSNLYLAPEIYNDEIFDRSVDAFSFGLILYEMVEGIQPFHPRPPEEVAKAICIEGKRPPFKIKSKSYPPDLKELIEECWDPEPVVRPTFSEIIVRLDKIVANCSKQGWWKDTFKLPWSVEVLKSVGSSRSVEVLKSVGSSKSVQHLDLWIAESLRSSDLVESL 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3371442 3376847 + Lag0014672.1 Lac12g0300 588897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0300 518 Pfam Protein tyrosine and serine/threonine kinase 200 450 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac12g0300 518 SUPERFAMILY Ankyrin repeat 72 176 IPR036770 -
Lac12g0300 518 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 75 452 IPR051681 GO:0004674(PANTHER)
Lac12g0300 518 Gene3D - 49 184 IPR036770 -
Lac12g0300 518 ProSiteProfiles Protein kinase domain profile. 189 455 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g0300 518 PIRSF ILK 8 472 - -
Lac12g0300 518 SMART serkin_6 193 455 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g0300 518 CDD STKc_MAP3K-like 199 451 - -
Lac12g0300 518 Gene3D Phosphorylase Kinase; domain 1 188 268 - -
Lac12g0300 518 ProSiteProfiles Ankyrin repeat profile. 105 137 IPR002110 GO:0005515(InterPro)
Lac12g0300 518 SMART ANK_2a 105 134 IPR002110 GO:0005515(InterPro)
Lac12g0300 518 SMART ANK_2a 73 101 IPR002110 GO:0005515(InterPro)
Lac12g0300 518 SMART ANK_2a 138 167 IPR002110 GO:0005515(InterPro)
Lac12g0300 518 ProSiteProfiles Ankyrin repeat region circular profile. 105 137 - -
Lac12g0300 518 FunFam serine/threonine-protein kinase STY46-like 186 269 - -
Lac12g0300 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac12g0300 518 FunFam Integrin-linked protein kinase 1 47 184 - -
Lac12g0300 518 FunFam Os01g0748600 protein 179 470 - -
Lac12g0300 518 SUPERFAMILY Protein kinase-like (PK-like) 201 451 IPR011009 -
Lac12g0300 518 Pfam Ankyrin repeats (3 copies) 78 165 IPR002110 GO:0005515(InterPro)
Lac12g0300 518 Gene3D Transferase(Phosphotransferase) domain 1 269 476 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0300 Lac-Chr12:3371442 Lac1g3451 Lac-Chr1:53873252 1.20E-84 dispersed
Lac12g0300 Lac-Chr12:3371442 Lac9g2245 Lac-Chr9:41820390 3.00E-85 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85784 PF07714 PK_Tyr_Ser-Thr 7.00E-50 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0300 - - - 0.0