Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac12g0366 | ATGAATTCAGATATCAACTCCCTCGCCATTCCCAGTAGCAGAAGCACCACTACTCCACTGGACGACCTCGCTTTTCCATTTGATCTCCAAATGATCGCCTCCAAGCGCCGCCGCCATAACCCGCGCAAGAAGCGGTCCAGAATCGGAGACGACTCCTCCGCCGCCGTCGTCGCTTCCAAGGCTAAGTTTACCAAGAAGCCGGATCCTGCGGCGCCGAAGACCACGCCTCCGTGTACCGAGTGCGGGAAGAAATTTTGGTCGGTCAAGGCGCTTTCCGGTCACATGAGGTGTCATCCAGAGCGTCAATGGCGGGGGATTAATCCGCCGGTTCATTTCCGTCGCCCGGTTTCGGTTGATTTGGTGGAAGAATCGGAGACTACGGAAGAGGATCAGAACATCGCCGCTTGCTTGATAATGCTCGCCAATGGCCCTAATTCGATCGATAGGGTTTCCGATTGTCGATTCGAGTGCTCGAGTTGCAAGAAAGTGTTTGGATCGCACCAGGCGCTTGGAGGGCATAGGGCAAGTCACAAGAATGTGAAAGGCTGTTTCGCCATGGCGAAGAGCGATGATGAAGAAACAGAGGATGATTCTCTGATTGGGGATTTTGGCCGTGAGAGGAGTATCGACCTGGAGGATAAAATGTCGATGGTTTTTGCCGCTGGTGGGCACAAGAGATGCCATTGGGAGAGAGTGGAGGAGAATGCAGCTACAGAAGATGAAGAGGATTGTGTTGATTTGGACATGAACATGCCTGCTCCTGTTGAAGATGGCTCCTCTTCTTCGTATTCTTCTGGCCTCACTCTGGATCTCAGGTTGGGCCTTTGA | 828 | 52.9 | MNSDINSLAIPSSRSTTTPLDDLAFPFDLQMIASKRRRHNPRKKRSRIGDDSSAAVVASKAKFTKKPDPAAPKTTPPCTECGKKFWSVKALSGHMRCHPERQWRGINPPVHFRRPVSVDLVEESETTEEDQNIAACLIMLANGPNSIDRVSDCRFECSSCKKVFGSHQALGGHRASHKNVKGCFAMAKSDDEETEDDSLIGDFGRERSIDLEDKMSMVFAAGGHKRCHWERVEENAATEDEEDCVDLDMNMPAPVEDGSSSSYSSGLTLDLRLGL | 275 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 4247808 | 4248635 | + | Lag0014738.1 | Lac12g0366 | 588963 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac12g0366 | 275 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 76 | 103 | IPR013087 | - | |
Lac12g0366 | 275 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Lac12g0366 | 275 | SUPERFAMILY | beta-beta-alpha zinc fingers | 77 | 177 | IPR036236 | - | |
Lac12g0366 | 275 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 157 | 177 | IPR013087 | - | |
Lac12g0366 | 275 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Lac12g0366 | 275 | Gene3D | Classic Zinc Finger | 35 | 183 | - | - | |
Lac12g0366 | 275 | MobiDBLite | consensus disorder prediction | 34 | 77 | - | - | |
Lac12g0366 | 275 | SMART | c2h2final6 | 76 | 98 | IPR013087 | - | |
Lac12g0366 | 275 | SMART | c2h2final6 | 155 | 177 | IPR013087 | - | |
Lac12g0366 | 275 | Pfam | C2H2-type zinc finger | 154 | 178 | IPR013087 | - | |
Lac12g0366 | 275 | Pfam | C2H2-type zinc finger | 78 | 100 | IPR013087 | - | |
Lac12g0366 | 275 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 155 | 182 | IPR013087 | - | |
Lac12g0366 | 275 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 78 | 98 | IPR013087 | - | |
Lac12g0366 | 275 | PANTHER | ZINC FINGER PROTEIN ZAT2-RELATED | 34 | 273 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac12g0366 | Lac-Chr12:4247808 | Lac7g0068 | Lac-Chr7:598133 | 6.20E-13 | dispersed | |
Lac5g1187 | Lac-Chr5:21099043 | Lac12g0366 | Lac-Chr12:4247808 | 1.20E-110 | transposed | |
Lac12g0366 | Lac-Chr12:4247808 | Lac9g1896 | Lac-Chr9:38721572 | 9.50E-62 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23013 | PF13912 | zf-C2H2_6 | 6.60E-10 | CL0361 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac12g0366 | - | - | - | 0.0 |