Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0366 ATGAATTCAGATATCAACTCCCTCGCCATTCCCAGTAGCAGAAGCACCACTACTCCACTGGACGACCTCGCTTTTCCATTTGATCTCCAAATGATCGCCTCCAAGCGCCGCCGCCATAACCCGCGCAAGAAGCGGTCCAGAATCGGAGACGACTCCTCCGCCGCCGTCGTCGCTTCCAAGGCTAAGTTTACCAAGAAGCCGGATCCTGCGGCGCCGAAGACCACGCCTCCGTGTACCGAGTGCGGGAAGAAATTTTGGTCGGTCAAGGCGCTTTCCGGTCACATGAGGTGTCATCCAGAGCGTCAATGGCGGGGGATTAATCCGCCGGTTCATTTCCGTCGCCCGGTTTCGGTTGATTTGGTGGAAGAATCGGAGACTACGGAAGAGGATCAGAACATCGCCGCTTGCTTGATAATGCTCGCCAATGGCCCTAATTCGATCGATAGGGTTTCCGATTGTCGATTCGAGTGCTCGAGTTGCAAGAAAGTGTTTGGATCGCACCAGGCGCTTGGAGGGCATAGGGCAAGTCACAAGAATGTGAAAGGCTGTTTCGCCATGGCGAAGAGCGATGATGAAGAAACAGAGGATGATTCTCTGATTGGGGATTTTGGCCGTGAGAGGAGTATCGACCTGGAGGATAAAATGTCGATGGTTTTTGCCGCTGGTGGGCACAAGAGATGCCATTGGGAGAGAGTGGAGGAGAATGCAGCTACAGAAGATGAAGAGGATTGTGTTGATTTGGACATGAACATGCCTGCTCCTGTTGAAGATGGCTCCTCTTCTTCGTATTCTTCTGGCCTCACTCTGGATCTCAGGTTGGGCCTTTGA 828 52.9 MNSDINSLAIPSSRSTTTPLDDLAFPFDLQMIASKRRRHNPRKKRSRIGDDSSAAVVASKAKFTKKPDPAAPKTTPPCTECGKKFWSVKALSGHMRCHPERQWRGINPPVHFRRPVSVDLVEESETTEEDQNIAACLIMLANGPNSIDRVSDCRFECSSCKKVFGSHQALGGHRASHKNVKGCFAMAKSDDEETEDDSLIGDFGRERSIDLEDKMSMVFAAGGHKRCHWERVEENAATEDEEDCVDLDMNMPAPVEDGSSSSYSSGLTLDLRLGL 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4247808 4248635 + Lag0014738.1 Lac12g0366 588963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0366 275 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 103 IPR013087 -
Lac12g0366 275 MobiDBLite consensus disorder prediction 1 21 - -
Lac12g0366 275 SUPERFAMILY beta-beta-alpha zinc fingers 77 177 IPR036236 -
Lac12g0366 275 ProSitePatterns Zinc finger C2H2 type domain signature. 157 177 IPR013087 -
Lac12g0366 275 MobiDBLite consensus disorder prediction 1 20 - -
Lac12g0366 275 Gene3D Classic Zinc Finger 35 183 - -
Lac12g0366 275 MobiDBLite consensus disorder prediction 34 77 - -
Lac12g0366 275 SMART c2h2final6 76 98 IPR013087 -
Lac12g0366 275 SMART c2h2final6 155 177 IPR013087 -
Lac12g0366 275 Pfam C2H2-type zinc finger 154 178 IPR013087 -
Lac12g0366 275 Pfam C2H2-type zinc finger 78 100 IPR013087 -
Lac12g0366 275 ProSiteProfiles Zinc finger C2H2 type domain profile. 155 182 IPR013087 -
Lac12g0366 275 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Lac12g0366 275 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 34 273 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0366 Lac-Chr12:4247808 Lac7g0068 Lac-Chr7:598133 6.20E-13 dispersed
Lac5g1187 Lac-Chr5:21099043 Lac12g0366 Lac-Chr12:4247808 1.20E-110 transposed
Lac12g0366 Lac-Chr12:4247808 Lac9g1896 Lac-Chr9:38721572 9.50E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23013 PF13912 zf-C2H2_6 6.60E-10 CL0361 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0366 - - - 0.0