Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0371 ATGCTCTTAGCTGTTATCAACTTTGCCGGGAACTTCATCGGACGCCTCTCAGCCGGAGCACCAATCACTGCTTCTCAACTGTTTCAGTATCCAGCTGGACTTGGCGTGGCATTCAGTTCCTTGATCAATCAAAGGGACCAAGTAGATAATGAAGTTGATTCTGATAGATTGGAGCATGAACAGAGTTCAGATAGCCAATCGCAAGCGTCTCAGGAGGATCCTGGAGGAACTATTGCATCAAAATCAGATATCAAATGCACGGCGGCTGCCTCGAAAACACTTGAAGAACCTGTCAACCTGCCTGACGTTACAATCAAACAAGTGGATCGCGGAGGTATCTCTAATATAGTGTCTGAGAAAGTGACCCTTAAGCCAATTACTGCAGACCAGGACTCACATCCTGATTTGAAAGTAAGTATCACCTCTACAATACGAGAGAAAGTGTCAGAGGATGGATATAACTGGCGGAAATATGGTCAGAAACTAGTAAAGGGAAATGTCTTTGTTAGAAGCTATTACAGATGTACGCATCCAACTTGCATGGTGAAAAAACAACTAGAGCGCACTCATGATGGGAAAATTACAGATACTGTTTACTTTGGCCAGCATGATCACCCTAAACCTCAACCTCACATTCCAGTTGCTGTTGGAGTTGCCATGGTTGAAGAAAAATTAGATGAACATGCTTCTAGAAGTTCTCAAGATAAGACCTCCGTTGCGCTTGGCCAGACACCTCATCAAACTGAGCCGGTTGATACACTTCAACTGTCATCAGTCATGGCCAGCTATAATGTAAAAGATGAAGCTTTGAAAAGGTCTAGGATTAATGATGAGGATGACAACAGTGATGATACACCAGACTTGAAACGAGAGAAGAAAAGATGTAATATTGACGTGACAGTAGCAGACAAGTCAACAGTTGAATCTCGTGTTGTTGTTCAAACTCCTAGTGAGGTTGACATTGTCAATGATGGATACCGCTGGCGGAAGTACGGACAGAAATTAGTGAAAGGCAATCCAAATCCTAGGAGTTACTACAGATGCTCAAGTCCTGGATGTCCAGTTAAGAAACATGTAGAGAGGGCGTCTCATGATCCAAAAGTGGTGCTTACCACGTATGAGGGTCAGCACGACCATGATATGCCTCCTGCAAGGACAGTGACGTTGAACTCAGTTGGGGCCGCAGCAGCCCATAGTGATGAGATAAAAACAAAATCTGTCGGTAGTTCGATTAGCCATGATACGGTGGTTCATGCTAGTAATGATCCTCGAAGCGATTCAAGTTCTGAAGGCAAATTAATTGAAAAGAATGGCACGTCGAATGCCACAGAAGCAAGTGATGGCATTGTACTCGATATGGTGGTAAATTCCAGTCCAGGAGTTGCGAGTGGACAAAATAAGCAGCTCAAAGTAGCAATTGAAAGCTAA 1428 43.77 MLLAVINFAGNFIGRLSAGAPITASQLFQYPAGLGVAFSSLINQRDQVDNEVDSDRLEHEQSSDSQSQASQEDPGGTIASKSDIKCTAAASKTLEEPVNLPDVTIKQVDRGGISNIVSEKVTLKPITADQDSHPDLKVSITSTIREKVSEDGYNWRKYGQKLVKGNVFVRSYYRCTHPTCMVKKQLERTHDGKITDTVYFGQHDHPKPQPHIPVAVGVAMVEEKLDEHASRSSQDKTSVALGQTPHQTEPVDTLQLSSVMASYNVKDEALKRSRINDEDDNSDDTPDLKREKKRCNIDVTVADKSTVESRVVVQTPSEVDIVNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASHDPKVVLTTYEGQHDHDMPPARTVTLNSVGAAAAHSDEIKTKSVGSSISHDTVVHASNDPRSDSSSEGKLIEKNGTSNATEASDGIVLDMVVNSSPGVASGQNKQLKVAIES 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4292126 4295591 + Lag0014743.1 Lac12g0371 588968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0371 475 ProSiteProfiles WRKY domain profile. 144 208 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac12g0371 475 MobiDBLite consensus disorder prediction 225 254 - -
Lac12g0371 475 MobiDBLite consensus disorder prediction 401 447 - -
Lac12g0371 475 MobiDBLite consensus disorder prediction 234 254 - -
Lac12g0371 475 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 190 396 IPR044810 GO:0003700(InterPro)
Lac12g0371 475 MobiDBLite consensus disorder prediction 272 291 - -
Lac12g0371 475 MobiDBLite consensus disorder prediction 63 77 - -
Lac12g0371 475 SUPERFAMILY WRKY DNA-binding domain 144 208 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac12g0371 475 MobiDBLite consensus disorder prediction 403 446 - -
Lac12g0371 475 FunFam WRKY transcription factor 57 308 382 - -
Lac12g0371 475 ProSiteProfiles WRKY domain profile. 317 382 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac12g0371 475 MobiDBLite consensus disorder prediction 49 82 - -
Lac12g0371 475 SUPERFAMILY WRKY DNA-binding domain 314 382 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac12g0371 475 Gene3D WRKY domain 135 209 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac12g0371 475 SMART WRKY_cls 322 381 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac12g0371 475 SMART WRKY_cls 149 207 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac12g0371 475 Pfam WRKY DNA -binding domain 150 206 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac12g0371 475 Pfam WRKY DNA -binding domain 323 380 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac12g0371 475 FunFam WRKY transcription factor 138 209 - -
Lac12g0371 475 Gene3D WRKY domain 309 375 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0371 Lac-Chr12:4292126 Lac5g0656 Lac-Chr5:8070200 5.30E-60 dispersed
Lac12g0371 Lac-Chr12:4292126 Lac5g0962 Lac-Chr5:14557435 1.40E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23014 PF03106 WRKY 3.30E-26 CL0274 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0371 K18834 - csv:101212482 655.981