Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0372 ATGTCTCAGAATTCTAAGTTCTCTTGTTCTAAGGTCAGATTACCCGCTAGTTTCAAGGCGAAGAGGGCCAAGGAGCATTTCCATGGCCAGCGGTGGAGTAACCTTCTTTATCTCTTGCCATTGGGCTTGATTTTGATTCTGGGTCTTTGGTCTGTTTTTAGTTTTTGTGGTGGGAATTCAGTTCGGGAAAGGGAGCTTCCAGATACGTGTAAAGAGAAGGCCTGGAGCTTGCTGAAGCATTTCAATGTCAGCGAGAGTCAGTTTCATGCTTTGGCTTCATTCTTCTTTCATTCAGATCAGGTAGCGTATTCTTTTCTCCATCCCAATCTGTTTTTCTACCAGCAGAGCCAGAATTTCTCTGAACTCCCCACATTCCTTCTAACTACTGAGTTCCACCCCCCTGTATTTGTGCCTTGTTTGGGGTCTTTGGGTAAGGCACCCATCTTCATCTTTTACATAGATCCAAGTTACCACTCTATCCCATATTTGATTGATTTCCTTGAAGAAGTGCTAGACCCACCAATCCAAGGGTACCTTATTTGTTTTTCTCAAATTGTCAATTCCAGTCCTCCACAATCAAAGGAAGGGGATGAGAACACATCCTTCTTCCATAGATGGGTCGCGGCTAAGAAAAACAGGAATTTTATTGCTACTTTGGAGAGCGACGATGGGAAATTACTGACCACCTCTGAGGAGATTGAAAAAGAGATCATAGGATTTTTTGAGAACCTTTATTCAGCAGACTCAGGGCAGCGTTTTATATTAGATGGGGTCAACTGGGCGCCCATTGACAGTCAAGATCGTGATCTGCTTGAAAGCCCTTTTAAGGAAGAGGAGATCTCCAAAGCTATTGGTGCGATTGGTTGCCTTAAATCCCCGGGGCCTGATGGTATGACCGGTGAGTTTTATAAAAAGTTTTGGAACATTTTGAAGCTGGATTTAGTAGAGGTGTTCCAGGAATTTTTTCAAAACGGCATCATCAACAAACGCACGAATGAAACTTATATTTGCTTGATTCCCAAGAAGAAAAAGGTTGCAAACGTTAGAGATTTTCGCCCCATAAGTCTCATCACTTCGTTATATAAAATTATAGCTAAAGTCCTCTCCGAAAGACTTAAAAATGTTCTCCCAAACATTATTAGCGATTGCCAAGCAGCTTTTGTGAAAGGGAGACAAATCTTGGATGCCATTCTTGTAGCTTCTGAGACGGTGGAAGAACAAAAATCCAAGAAGGAAGGGGCTTACATTCTTAAGCTTGATCTTGAGAAAGCTTACGATAAGGTCAGTTGGGAGTTCCTCGATGCGATTTTAGAGCTAAAAGGCTTCGGTAGTAGATGGAGGAAGTGGATTAAAGGTTGCACCCAGAGCACAAACTTTTCTGTTATGATTAACGGTAGGCCGAGGGGTAAATTTGTGGCTTCTAGAGGTCTTCGTCAAGGTAACCCGATGTCCCCTTTCTCGTTCACTATCATCAGGGATGCCCTCAGCCGGTCCATTCAATTTTGTTTGGAAAGAAGAATTCTAAATGGCCTCAAGATAGGGAGGGAGGGAGTGGAGATTTCCCATATTCAATACGCCGATGATACAATCATTTTTTGCCCGAAGGAGGCTGTTTGCATTCGAAATTGGTGGGAAATTCTGGGAATTTTGATGGCGGGGTCGGGGCTGTCCCTAAACTTATCCAAGACCTCCTTGATTGGCATTAACGTTGGGCATGATGTGGTTAAACAGCAAGCTGATTCCTTTGGGTGCAAGGCTGAAAAGCTCCCGATAAGCTACCTGGGCTTCCCCTTAGGTGGAAATCACCGTAGATGCTCCTTCTGGGAGCCTTTGGTTGACAAACTTAGGAAGAAGTTGGATGCGTGGCGCTCTCTTTTGTTATCCAAAGGTGGCAGAGTTACTTTGGCCCAATCAGTCCTAAATAGCCTCCCTATCTATTGCTTTTCTATAGCTCGGGCTCCCAAAAGATTATTAGATCCATGGAGAAAATTATCAGAGACTTTGTTTGGAATGGTGATTCGAAGTGGGGAAGGTAAAAATATCCGCTTTTGGGAAGACCCGTGGATTGATCAAATCCCTCTCAAGATATCCTACCCCGATATTTTCAATGTCTCCTTACACAAGGATTACACCATTTTCCAATGTTGGGATGATGAGAACCAAACTTGGAATTTAGGCCTTAGAAGAGGCTTGTTTGATAGGGAGACTCATGAATGGATAGCTTTGGTGGAGAAACTCAACTCAGTGCAAAGAGGGGAAGGTATGGATAGGATCCAGTGGACCATTGAAGGCTCAGGTTCCTATTCAAGCAAATCAATGTTCTATCGTCTTAATGAGAGGCAACCCTCAAATACTATGGCCATGACTAGCTTGGTTTGGAAAGTTAAATGCCCAAAAAAAGTGAAGGTTTTCCTTTGGTCTTTGGCATACAGAAGCCTGAACACTGATGAGAAACTTCAGAAAAAGTTTTGGAGATGGACTGTGTCTCCATCCGGAAAAGTGGGAATTCAATTCTGTCTTCCTCAAAGAGTGGATGACTGGCTGATGGAGGCTTTATCTGCGTGGAACTTAAGAGGAAAGGCTAAGATCATTAGCAGTTGTGCGGTTCGAGCTATTTTTTGGCAAATTTGGTTGGAAAGAAATGCTAGAACTTTCGAGAACAAAGCCCTCAGTTTCGATTCTTTTACAGCATCTCTCCAGTGTGCTAAAGACCCAGGACCTGGTATTGCATTGAAAGATTTCATTGCTTGTACTTTGAAGATATTAGAAGAGGAGCAAGACTTGCAAAAGCAGCATGGGTGGCTTTCTGAAAATTTAAAATCTGAAGGCCAGTGCCCAGTTAGGGGTGAGATGGGCTCCTTCAATGTTGATCTATTGCAGTTAGTGGACAAGACACGCTCACTTACTTCACATTCTTCTTTTGCACTTGTGTCTCCTTGTGATGAGATTCATAGAGAGAAGATCTTGCATACTAGGGAAATTGGAAATGAGCATTCTCGAAGTTTGAATGGATTAGTAATGGCGTTCTTATGGATCCTTGCTGTAGTAATATCATGCCTGAAGATGTCTAGTTTTCATTTGAAATTAAGGAACCATAAACTCAAGCCAATGAAGCATCCATCGGATGAGAATCAGCCAGTAGTACAGCAGAAGCAGTCAGATCTATCTCCAAGTCCTCCTAAAGGGGCTGGAAAATGGAGAAAAAAGCTTCTTATAATATTTGTTTTACTTGGAATTATTGGATCCTTTTGGCTCTTTTGGTATTTGAACAACAAAATCATCCTGAGAAGAGAAGAAACACTTGCTAACATGTGTGATGAGCGAGCTCGAATGTTACAGGATCAATTCAATGTTAGCATGAACCATGTTCATGCCTTGGCTATTCTGGTCTCCACTTTTCATCATGGCAAGCATCCTTCAGCCATTGATCAGAAAACATTCAGTGAATATGCAGAAAGAACAGCTTTTGAACGACCACTAACCAGTGGGGTGGCTTATGCTTTGAAAGTTAATCATTCAGAAAGAAAGCAATTTGAAGAGGAACATGGGTGGACAATTAAGAAGATGGGAACAGAGGACCAGGCTCTGGTTCAGGATTGTATTCCTGAGAATTTAGATCCTGCTCCCTTTCAGGATGAATATGCACCTGTGATATTTTCACAAGAAACTGTATCACATATAGTTTCCATTGACATGATGTCTGGAAAGGAAGACCGTGAAAACATCTTGCGAGCGAGGGCTTCAGGGAAGGGAGTGTTGACATCTCCTTTCAAGCTTCTAAAGTCCAATCACCTAGGTGTTGTTCTCACTTTTGCTGTCTATAACACCGACCTTCCTCCTGATGCAACACCGGAGCAACGTATTGAAGCTACTGTTGGGTATCTAGGAGCATCTTATGATGTTCCATCACTGGTGGACAAGCTTCTGCACCAACTTTCCAGCAAACAATCAATTGTTGTTGATGTTTATGATACAACTAATGCATCTGCACCCATCAAGATGTATGGATCTGATGTAATTGATACTGGTCTATTGCACATTAGTAACCTGGATTTTGGAGACCCCCAAAGGAAGCATGAGATGCATTGCAGATTCAAGCAGAAGCCTCAATTACCATGGATGGCTATAAATGCATCAGTGGGAGTTCTAGTCATTACTTTACTTGTTGGCCATATATTTTATGCGGCCATAAGTCGAATCGCAAAAGTGGAGAATGACTATCGTGAGATGATGGGACTCAAAAGTCGTGCTGAAGCTGCAGATGTGGCAAAGTCTCAGTTTCTTGCAACTGTTTCTCACGAGATCAGGACACCAATGAATGGTGTTTTAGGGATGCTAAAAATGCTGATGGACACTGATCTTGACCCAAACCAAATGGACTATGCCCAGACTGCATATGATAGTGGGAAAGAATTAATATCACTAATAAATGAGGTTCTTGACCAAGCTAAAATCGAATCAGGCAGGCTTGAACTTGAAGATGTACCATTTGATCCACGAGCTTTACTGGATAATGTGCTGTCAATGTTCTCTGGGAAATGTCATGAGAAGGGAATAGAGTTAGCTGTTTATGTCTCTAATCTGGTCCCTGAAGTTCTCATTGGTGATCCTGGACGCTTCCGACAGATAATTACCAATCTCGTGGGAAATTCAATTAAGTTCACCAACAATGAAGGACACATATTTGTTACTGTACACCTGGCAGACGAAGTGAGGACTCCACTTGATGCAATGGACAGAGTGCTAAGGCAAGGCTTAGATATAGTAAAAGAGATGCCAAGAAAAAGTCATAATACATTAAGCGGGTTTCCAGTGGTCGAAAGGTGCAAGAGTTGGGAGCGTTTCGAGATATTTAATAGAACAGATGCGGTGCAGGAAGATGACTTAATTAAACTGCTTGTATCAGTCGAGGATACAGGTCATGGAATTCCTTTAGAAGCGCAAAGTCGAATTTTTATGCCTTTTATGCAAGCTGATAGTTCCACTTCACGCAAGTATGGTGGGACTGGAATAGGTCTGAGCATCAGCAAGTGTCTGGTGGCTTTAATGGGTGGAGAGATAGGATTTGTGAGCCAACCTGGTGTTGGCAGCACATTTTCATTTACTGGATGTTTGAGAAAAGGCGATACGAGGTCTCTCGATACAAAGTGGCAGCAGAATGATCCAGCTGTACTAGATTTCCGAGGACTGCGAGCGTTAGTAATAGATAATAGAAGCATTAGAGCTGAGGTAACAAAATATCATCTCAAGAGGTTAGGGATCTTAGTAGATACAGTTTCAAGTCTGGTTTCAGCACATGAATACTCAACCAATAATTGCATCAAAAGTCCATCTAAACCTTTGGCCATGGTGCTTATCGACAAAGATGTATGGGTTAAGGAAACCGGTCCGATGATTGCTCATGTATTTAAAGAACACGGAAATGGAAAAGAAGAATCAACAAAAAGTCCTAAGATCTTTCTCTTGGCTACCTCCAACAGCCCTCAAGAGACGAGAGCTCTCAAGTCGACCGGTTATGTTAATAATGTAATGGTAAAACCCCTTAGGCTCGGTGTCTTGATTGGATGCTTCCAGGAAGCGTTCGGGAAGGTAAATAGAAAGAAACCGTCTATTCTCGGGAACTTACTGAGAGAAAAGCAAATATTGGTAGTTGATGACAATGCAGTTAATAGAAGAGTTGCAGAAGGTGCTCTAAAGAAATATGGAGCAAAGGTCACCTGTGTGGAAAGTGGCAGAGCTGCTATTTCACTGTTACATCCACCACACAAGTTCCATGCTTGCTTCATGGATGTTCAGATGCCTGAGATGGATGGGTTTGAAGCAACAAAACAGATACGAGATATCGAAAATAAAGTTAATGATGACATTGCTTCTGGGAAAGTATCAATCGATATGTTTGGGAATGTGGCTCATTGGCATACACCAGTATTGGCCATGACAGCTGATGTGATTCAGTCTACAAATGAAGCATGTATGAACTGTGGGATGGATGGTTATGTTGCAAAGCCTTTCGAAGAAGAAAAATTATATTCAGCGGTAGCTCGTTTCTTCGAATCGAATGATTGA 6066 42.24 MSQNSKFSCSKVRLPASFKAKRAKEHFHGQRWSNLLYLLPLGLILILGLWSVFSFCGGNSVRERELPDTCKEKAWSLLKHFNVSESQFHALASFFFHSDQVAYSFLHPNLFFYQQSQNFSELPTFLLTTEFHPPVFVPCLGSLGKAPIFIFYIDPSYHSIPYLIDFLEEVLDPPIQGYLICFSQIVNSSPPQSKEGDENTSFFHRWVAAKKNRNFIATLESDDGKLLTTSEEIEKEIIGFFENLYSADSGQRFILDGVNWAPIDSQDRDLLESPFKEEEISKAIGAIGCLKSPGPDGMTGEFYKKFWNILKLDLVEVFQEFFQNGIINKRTNETYICLIPKKKKVANVRDFRPISLITSLYKIIAKVLSERLKNVLPNIISDCQAAFVKGRQILDAILVASETVEEQKSKKEGAYILKLDLEKAYDKVSWEFLDAILELKGFGSRWRKWIKGCTQSTNFSVMINGRPRGKFVASRGLRQGNPMSPFSFTIIRDALSRSIQFCLERRILNGLKIGREGVEISHIQYADDTIIFCPKEAVCIRNWWEILGILMAGSGLSLNLSKTSLIGINVGHDVVKQQADSFGCKAEKLPISYLGFPLGGNHRRCSFWEPLVDKLRKKLDAWRSLLLSKGGRVTLAQSVLNSLPIYCFSIARAPKRLLDPWRKLSETLFGMVIRSGEGKNIRFWEDPWIDQIPLKISYPDIFNVSLHKDYTIFQCWDDENQTWNLGLRRGLFDRETHEWIALVEKLNSVQRGEGMDRIQWTIEGSGSYSSKSMFYRLNERQPSNTMAMTSLVWKVKCPKKVKVFLWSLAYRSLNTDEKLQKKFWRWTVSPSGKVGIQFCLPQRVDDWLMEALSAWNLRGKAKIISSCAVRAIFWQIWLERNARTFENKALSFDSFTASLQCAKDPGPGIALKDFIACTLKILEEEQDLQKQHGWLSENLKSEGQCPVRGEMGSFNVDLLQLVDKTRSLTSHSSFALVSPCDEIHREKILHTREIGNEHSRSLNGLVMAFLWILAVVISCLKMSSFHLKLRNHKLKPMKHPSDENQPVVQQKQSDLSPSPPKGAGKWRKKLLIIFVLLGIIGSFWLFWYLNNKIILRREETLANMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAIDQKTFSEYAERTAFERPLTSGVAYALKVNHSERKQFEEEHGWTIKKMGTEDQALVQDCIPENLDPAPFQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTDLPPDATPEQRIEATVGYLGASYDVPSLVDKLLHQLSSKQSIVVDVYDTTNASAPIKMYGSDVIDTGLLHISNLDFGDPQRKHEMHCRFKQKPQLPWMAINASVGVLVITLLVGHIFYAAISRIAKVENDYREMMGLKSRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKMLMDTDLDPNQMDYAQTAYDSGKELISLINEVLDQAKIESGRLELEDVPFDPRALLDNVLSMFSGKCHEKGIELAVYVSNLVPEVLIGDPGRFRQIITNLVGNSIKFTNNEGHIFVTVHLADEVRTPLDAMDRVLRQGLDIVKEMPRKSHNTLSGFPVVERCKSWERFEIFNRTDAVQEDDLIKLLVSVEDTGHGIPLEAQSRIFMPFMQADSSTSRKYGGTGIGLSISKCLVALMGGEIGFVSQPGVGSTFSFTGCLRKGDTRSLDTKWQQNDPAVLDFRGLRALVIDNRSIRAEVTKYHLKRLGILVDTVSSLVSAHEYSTNNCIKSPSKPLAMVLIDKDVWVKETGPMIAHVFKEHGNGKEESTKSPKIFLLATSNSPQETRALKSTGYVNNVMVKPLRLGVLIGCFQEAFGKVNRKKPSILGNLLREKQILVVDDNAVNRRVAEGALKKYGAKVTCVESGRAAISLLHPPHKFHACFMDVQMPEMDGFEATKQIRDIENKVNDDIASGKVSIDMFGNVAHWHTPVLAMTADVIQSTNEACMNCGMDGYVAKPFEEEKLYSAVARFFESND 2021
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 4297308 4310533 - Lag0014744.1 Lac12g0372 588969
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0372 2021 Gene3D CHASE domain 1142 1369 IPR042240 -
Lac12g0372 2021 SMART REC_2 1879 2013 IPR001789 GO:0000160(InterPro)
Lac12g0372 2021 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 320 598 IPR000477 -
Lac12g0372 2021 SMART CHASE_2 1138 1337 IPR006189 -
Lac12g0372 2021 FunFam Histidine kinase 4 1142 1369 - -
Lac12g0372 2021 MobiDBLite consensus disorder prediction 1036 1063 - -
Lac12g0372 2021 MobiDBLite consensus disorder prediction 1043 1057 - -
Lac12g0372 2021 Gene3D - 1395 1486 - -
Lac12g0372 2021 Gene3D - 1487 1707 IPR036890 -
Lac12g0372 2021 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1477 1702 IPR036890 -
Lac12g0372 2021 ProSiteProfiles Histidine kinase domain profile. 1430 1707 IPR005467 -
Lac12g0372 2021 FunFam Histidine kinase 4 1395 1486 - -
Lac12g0372 2021 Pfam His Kinase A (phospho-acceptor) domain 1423 1488 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac12g0372 2021 CDD RT_nLTR_like 333 598 - -
Lac12g0372 2021 CDD REC_hyHK_CKI1_RcsC-like 1881 2013 - -
Lac12g0372 2021 ProSiteProfiles CHASE domain profile. 1138 1362 IPR006189 -
Lac12g0372 2021 Gene3D - 1874 2020 - -
Lac12g0372 2021 SMART HisKA_10 1423 1488 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac12g0372 2021 ProSiteProfiles Response regulatory domain profile. 1731 1861 IPR001789 GO:0000160(InterPro)
Lac12g0372 2021 ProSiteProfiles Response regulatory domain profile. 1880 2017 IPR001789 GO:0000160(InterPro)
Lac12g0372 2021 SUPERFAMILY CheY-like 1726 1861 IPR011006 -
Lac12g0372 2021 SUPERFAMILY CheY-like 1877 2017 IPR011006 -
Lac12g0372 2021 SUPERFAMILY DNA/RNA polymerases 291 567 IPR043502 -
Lac12g0372 2021 Gene3D - 1089 1141 - -
Lac12g0372 2021 Gene3D - 59 102 - -
Lac12g0372 2021 PRINTS Bacterial sensor protein C-terminal signature 1667 1685 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lac12g0372 2021 PRINTS Bacterial sensor protein C-terminal signature 1691 1704 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lac12g0372 2021 PRINTS Bacterial sensor protein C-terminal signature 1632 1646 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lac12g0372 2021 PRINTS Bacterial sensor protein C-terminal signature 1650 1660 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lac12g0372 2021 SMART HKATPase_4 1535 1707 IPR003594 -
Lac12g0372 2021 Pfam CHASE domain 1141 1335 IPR006189 -
Lac12g0372 2021 PANTHER TWO-COMPONENT HISTIDINE KINASE 1064 2016 IPR050956 -
Lac12g0372 2021 CDD HisKA 1423 1484 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac12g0372 2021 Pfam Response regulator receiver domain 1881 2013 IPR001789 GO:0000160(InterPro)
Lac12g0372 2021 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 1409 1489 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac12g0372 2021 CDD HATPase_EvgS-ArcB-TorS-like 1540 1705 - -
Lac12g0372 2021 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 339 597 IPR000477 -
Lac12g0372 2021 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1631 1702 IPR003594 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0372 Lac-Chr12:4297308 Lac4g2005 Lac-Chr4:39572762 1.40E-231 dispersed
Lac4g1735 Lac-Chr4:36233027 Lac12g0372 Lac-Chr12:4297308 1.20E-17 dispersed
Lac5g0341 Lac-Chr5:3559630 Lac12g0372 Lac-Chr12:4297308 2.60E-41 dispersed
Lac13g0078 Lac-Chr13:580476 Lac12g0372 Lac-Chr12:4297308 5.40E-47 transposed
Lac13g1678 Lac-Chr13:18562023 Lac12g0372 Lac-Chr12:4297308 4.30E-277 transposed
Lac4g1833 Lac-Chr4:37496053 Lac12g0372 Lac-Chr12:4297308 2.5e-312 transposed
Lac6g2537 Lac-Chr6:43146084 Lac12g0372 Lac-Chr12:4297308 1.50E-28 transposed
Lac7g0026 Lac-Chr7:224182 Lac12g0372 Lac-Chr12:4297308 3.30E-13 transposed
Lac8g2211 Lac-Chr8:40434116 Lac12g0372 Lac-Chr12:4297308 2.90E-275 transposed
Lac12g0372 Lac-Chr12:4297308 Lac9g1967 Lac-Chr9:39417920 0.00E+00 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23015 PF00078 RVT_1 3.60E-44 CL0027 Lac TR
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0372 K14489 - vvi:100263145 1513.43