Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0377 ATGGCCACCTCTGCTATCCAACAGTCCGCCTTTGCCGGCCAGGCTGCCTTGAAGCAGTCCAATGAGCTCGTCCGAAGGGTCGGCGCTGTCGGTGGCGGCCGCTTCACCATGCGGCGGACAGTCAAGAGTGCTCCACAGAGCATATGGTATGGCCCAGACCGCCCAAAATACTTGGGACCATTCTCTGAACAAACACCATCTTACCTGACTGGAGAGTTCCCTGGTGACTATGGATGGGACACAGCCGGTCTATCGGCAGATCCCGAGACCTTCGCGAAGAACCGGGAGCTTGAGGTGATCCACTCCCGATGGGCCATGCTTGGTGCATTAGGTTGTGTCTTCCCTGAAATCCTTGCAAAGAATGGTGTCAAGTTTGGTGAATCAGTTTGGTTCAAGGCTGGTTCTCAGATCTTCTCTGAGGGTGGTCTAGATTACCTTGGCAACCCAAACCTCATCCATGCTCAGAGTATCCTTGCAATCTGGGCTTGCCAGGTTGTGCTCATGGGCTTTGTCGAAGGTTACAGAGTTGGTGGCGGTCCCCTTGGTGAAGGACTGGACCCAATTTACCCCGGAGGCGCCTTCGACCCACTCGGATTGGCTGATGACCCAGATGCATTTGCTGAGTTGAAGGTGAAGGAACTAAAGAATGGAAGGCTGGCAATGTTCTCCATGTTCGGATTCTTCGTCCAGGCTATCGTCACCGGAAAGGGTCCTATTGAGAATCTCTTTGACCATGTTGCAGATCCTGTTGCCAACAATGCATGGGCTTACGCCACCAACTTCGTACCCGGAAAATGA 798 53.51 MATSAIQQSAFAGQAALKQSNELVRRVGAVGGGRFTMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNGVKFGESVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4349059 4350254 - Lag0014749.1 Lac12g0377 588974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0377 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Lac12g0377 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Lac12g0377 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 265 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Lac12g0377 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
Lac12g0377 265 Pfam Chlorophyll A-B binding protein 66 232 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0377 Lac-Chr12:4349059 Lac9g2258 Lac-Chr9:41942147 2.30E-121 dispersed
Lac12g0377 Lac-Chr12:4349059 Lac5g1661 Lac-Chr5:33724674 1.50E-101 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0377 K08913 - csv:101212963 531.561