Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0396 ATGTCTTCAACTTCAACAAACAAGGCTGTGTGTTCTAAGACCAGCTGCGAGCGATCAAAGCATGGGGCTCATGTAGTTGCACAGACCCCAATTGATGCAAAGCTTCATGTAGACTTTGAAGGTTCTGAAAGGTTCTTTGATTACTCTGCGTCGGTTGATTTGAATGCCTCAAGTTCCACTAGCAATGTTCATGCCTCCACTGTACAGTCATATCTTCAGAACATTCAGAGAGGAAGTCTAGTTCAACCATTTGGTTGTATGATTGCTGTTGATGGGGAAAACTTGTCAGTCCTTGCATATAGTGAAAATGCCCCCGAAATGTTGGACTTGGCCCCACATGCTGTGCCTAACATCGAGCAGCAAGAAGCTCTAACTTTTGGATCAGATGTGCGAACACTTTTTCGATCCCCGGGAGCTGCCGCTTTACAGAAAGCAGCTGACTTTAAGGAAGTTAATCTTCTCAATCCTATACTGGTCCATTGCAAGACTTCAGGTAAACCATTTTATGCAATTTTGCATCGAGTAGACGTGGGATTAATTATAGATTTGGAACCAGTGAATCCAGCTGATGTGCCAGTGACCGCAGCTGGGGCATTGAAATCTTATAAGCTAGCAGCTAAAGCCATCTCAAAATTGCAGTCCTTGCCAAGTGGGAATATCTCTCTTTTATGTGAGGTATTGGTTAAGGAGGTTAGCGATTTGACAGGTTATGATCGAGTAATGGTGTATAAATTCCACGATGATGAGCATGGAGAAGTTGTAGCTGAGTGCTGCCGACCGGACTTAGAACCATATATGGGCTTGCACTACCCAGCTACTGATATACCTCAAGCTTCAAGGTTTCTCTTTTTGAAGAATAAAGTCAGGATGATATGTGACTGTTTGGCACCTCCAGTTAAAGTTCTTCAAGACAGAAGATTGACTCAGCCATTAAGTCTATGTGGGTCTGCATTGAGGGCTCCTCATGGTTGTCATGCTCGGTACATGATGAATATGGGTTCTATTGCATCTCTTGTGATGTCTATTACAATCAATGAGAATGATAGTGAATCAGAGAATGATCAAGAAAAGGAAAGAAAGTTGTGGGGTTTAGTAGTTTGCCATCACACAAGCCCTAGGTTTGTTCCATTTCCTTTGAGATATGCTTGTGAATTCTTGATTCAAGTCTTTGGTATACAGATTAACAAAGAAGTGGAGTTGCAAACTCAGTTGAAGGAGAAACACATATTGCGAATTCAAACAGTTCTTTGTGATATGCTGCTAAGAGACGCTCCAGTAGGAATTGCTACTCAGTCTCCCAATATTATGGATCTTGTTAAGTGTGACGGTGCTGCCTTATATTACAGGAAGAAGTTTTGGTTACTTGGAGTCACCCCCACAGAGGCACAAATTAGAGATATAGCTGAATGGCTTCTCAAAGACCATGGTGGAAGCACTGGTTTAAGTACCGACAGCCTTATTGAAGCTGGTTTCTATGGTGCTTCTGCCCTTGGTGACGAGGTTTGTGGAATGGCTGCTGTTAGGATTACGTCTAAGGACTTCCTTTTCTGGTTTCGGTCACATATGGCTAAAGAAATCAGATGGGGTGGTGCAAAACATGATCCTGGTGATCAGGATGATGGAAGAAAGATGCATCCAAGATCATCATTCAAGGCTTTCCTGGAAGTGGTCAAGCGGCGTAGTCAACCTTGGGAAGATGTTGAAATGGATGCCATCCACTCACTGCAATTAATATTACGAGGTTCTTTACAGGATGATATTGAAGAAGAATGCAAAGTTATTACAAATGTTCCATCAGTTGATGAGAAGACACAACACATGGATGAATTGCGTGTCATCACAAATGAGATGGTTCGCCTAATTGAGACAGCTGCAGTGCCCATCTTGGCTGTAGATGTCTTGGGCAAGATCAACGGTTGGAACTCCAAAGCTACTGAGCTTACAGGATTGTCTATCCAGCAAGCCATTGGCATGCCCTTTGTTGATTGTCTGGTGAATGATTCTGTTAAGGTGGCAAAGAAAATGCTTTCCTTGGCCATTAAAGGTATTGAAGAAAAGAACGTTGAAATCAAACTCAAAACATTTGGAATTCCAGGAAACAGTGGTCCTGTTATCTTAGAAGTTAACTCATGCTGTAGCCGAGACCTAAACGATAATGTCGTAGGAGTTTGCTTTATAGGGCAGGATGTTACTAAACAAAAACAGTTAATGAACAAATACACCCAAATCCAAGGTGATTACACAGGGCTTATGCGAAACCCATCTGCACTTATTCCTCCAATTTTTATGACCGATGATGATGGCCGGTGCTTGGAATGGAATGATGCAATGGAAAAATTATCTGGTTTTAGAAGGGAAGAGATGACAAATAGGATGCTTCTTGGGGAGGTTTTCACACTTGAAAATTTTGGCTGCCGTGTGAAAGATCAGACATTGACCAAACTTAGGATACTACTGCATAGAGTAATTTCGGGCCAGGATACAGAGAAATTTTTGTTTAGGTTCTGTGATCGTGAAGGAAATCATGTTGAAACATTGCTTACTGCAAGCAAAAGGACTGATGCAGAGGGTAATATCACTGGAGTTTTCTTCTTCTTGCTCTTGGCTAGTCCAGAACTTCAATATGCTTTGGAGATGCAGCGGATATCAGAACAAGCTACAGCTGATAATCTTCATAAATTGGCATATCTACGTCAAGAAATTCGAAAACCACTTGGTGGGATTAGATTTATGCAGAATCTGATGGGTTCATCTGACTTAAGCAGAGAGCAAAAGAGGCTACTTAAATTGAACACTTTGAGTCGGGAACAATTACACAAGATTGTAGATGATAATGATATCCAGAGTATTGAGGAATGTTACATGGAAACAAACTGTAGTGAGTTCAATCTTGGAGATGTTCTTGACGTTGTAACGAATCAAATCATGATTTTGAGCCAAGAGCGCGAGGTGAAGATCATTTGTGAATCACCTTCTGAAGTGTCATCTCTGCACTTGTATGGAGATAACACGAGGCTACAGCAGGTGCTCTCTGAGTTCTTGACTAACACACTTCTCTTCACTTGCAAAGGATCATCGGTCGTCTTCAAAACAGCTCCAAGGAAGGAGCGAATTGGGAAGGGAATCCACGTTGTTCATCTTGAATTGAGGATCACCCATCCCGCTCCAGGAATTCCTGCGCACTTGATCCGAGAGATGTTCGATGACAACAATGATAGCTCAAAGGAAGGTCTTGGCCTATACATCAGCCAGAAGCTTGTGAAGATCATGAATGGCACTGTACAGTATGTTCGAGAGGCCGAAACCTCGTCATTCATTGTCCTCATAGAATTCCCCTTGGTAGAACATATTACTTGA 3357 42.09 MSSTSTNKAVCSKTSCERSKHGAHVVAQTPIDAKLHVDFEGSERFFDYSASVDLNASSSTSNVHASTVQSYLQNIQRGSLVQPFGCMIAVDGENLSVLAYSENAPEMLDLAPHAVPNIEQQEALTFGSDVRTLFRSPGAAALQKAADFKEVNLLNPILVHCKTSGKPFYAILHRVDVGLIIDLEPVNPADVPVTAAGALKSYKLAAKAISKLQSLPSGNISLLCEVLVKEVSDLTGYDRVMVYKFHDDEHGEVVAECCRPDLEPYMGLHYPATDIPQASRFLFLKNKVRMICDCLAPPVKVLQDRRLTQPLSLCGSALRAPHGCHARYMMNMGSIASLVMSITINENDSESENDQEKERKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGIQINKEVELQTQLKEKHILRIQTVLCDMLLRDAPVGIATQSPNIMDLVKCDGAALYYRKKFWLLGVTPTEAQIRDIAEWLLKDHGGSTGLSTDSLIEAGFYGASALGDEVCGMAAVRITSKDFLFWFRSHMAKEIRWGGAKHDPGDQDDGRKMHPRSSFKAFLEVVKRRSQPWEDVEMDAIHSLQLILRGSLQDDIEEECKVITNVPSVDEKTQHMDELRVITNEMVRLIETAAVPILAVDVLGKINGWNSKATELTGLSIQQAIGMPFVDCLVNDSVKVAKKMLSLAIKGIEEKNVEIKLKTFGIPGNSGPVILEVNSCCSRDLNDNVVGVCFIGQDVTKQKQLMNKYTQIQGDYTGLMRNPSALIPPIFMTDDDGRCLEWNDAMEKLSGFRREEMTNRMLLGEVFTLENFGCRVKDQTLTKLRILLHRVISGQDTEKFLFRFCDREGNHVETLLTASKRTDAEGNITGVFFFLLLASPELQYALEMQRISEQATADNLHKLAYLRQEIRKPLGGIRFMQNLMGSSDLSREQKRLLKLNTLSREQLHKIVDDNDIQSIEECYMETNCSEFNLGDVLDVVTNQIMILSQEREVKIICESPSEVSSLHLYGDNTRLQQVLSEFLTNTLLFTCKGSSVVFKTAPRKERIGKGIHVVHLELRITHPAPGIPAHLIREMFDDNNDSSKEGLGLYISQKLVKIMNGTVQYVREAETSSFIVLIEFPLVEHIT 1118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4469365 4474179 - Lag0014768.1 Lac12g0396 588993

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0396 1118 CDD PAS 624 730 IPR000014 -
Lac12g0396 1118 PRINTS Phytochrome signature 635 650 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac12g0396 1118 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac12g0396 1118 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac12g0396 1118 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac12g0396 1118 PRINTS Phytochrome signature 616 632 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac12g0396 1118 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac12g0396 1118 PRINTS Phytochrome signature 728 748 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac12g0396 1118 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac12g0396 1118 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac12g0396 1118 PRINTS Phytochrome signature 708 725 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac12g0396 1118 Pfam GAF domain 222 397 IPR003018 GO:0005515(InterPro)
Lac12g0396 1118 SMART HKATPase_4 1001 1115 IPR003594 -
Lac12g0396 1118 ProSiteProfiles Histidine kinase domain profile. 896 1115 IPR005467 -
Lac12g0396 1118 PIRSF Phytochrome_conventional 2 1118 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Lac12g0396 1118 Gene3D - 933 1107 IPR036890 -
Lac12g0396 1118 CDD PAS 757 862 IPR000014 -
Lac12g0396 1118 CDD HisKA 894 944 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac12g0396 1118 ProSiteProfiles PAC domain profile. 686 742 IPR000700 -
Lac12g0396 1118 SUPERFAMILY PYP-like sensor domain (PAS domain) 760 864 IPR035965 -
Lac12g0396 1118 SUPERFAMILY GAF domain-like 406 585 - -
Lac12g0396 1118 CDD HATPase_Phy-like 1000 1111 IPR044767 -
Lac12g0396 1118 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1001 1113 IPR003594 -
Lac12g0396 1118 Gene3D - 403 576 IPR043150 -
Lac12g0396 1118 FunFam Phytochrome 954 1113 - -
Lac12g0396 1118 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 188 IPR035965 -
Lac12g0396 1118 Pfam PAS fold 756 866 IPR013767 GO:0006355(InterPro)
Lac12g0396 1118 Pfam PAS fold 616 730 IPR013767 GO:0006355(InterPro)
Lac12g0396 1118 SMART pas_2 615 681 IPR000014 -
Lac12g0396 1118 SMART pas_2 745 814 IPR000014 -
Lac12g0396 1118 Pfam Phytochrome region 411 585 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac12g0396 1118 Gene3D PAS domain 600 744 - -
Lac12g0396 1118 PANTHER OS08G0260000 PROTEIN 1 992 - -
Lac12g0396 1118 NCBIfam PAS domain S-box protein 620 737 IPR000014 -
Lac12g0396 1118 NCBIfam PAS domain S-box protein 760 865 IPR000014 -
Lac12g0396 1118 Gene3D PAS domain 759 866 - -
Lac12g0396 1118 Pfam PAS fold 71 186 IPR013654 GO:0006355(InterPro)
Lac12g0396 1118 FunFam Phytochrome 403 534 - -
Lac12g0396 1118 ProSiteProfiles PAS repeat profile. 746 798 IPR000014 -
Lac12g0396 1118 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 948 1112 IPR036890 -
Lac12g0396 1118 SUPERFAMILY PYP-like sensor domain (PAS domain) 620 735 IPR035965 -
Lac12g0396 1118 SUPERFAMILY GAF domain-like 199 395 - -
Lac12g0396 1118 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 388 IPR016132 -
Lac12g0396 1118 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Lac12g0396 1118 ProSiteProfiles PAS repeat profile. 613 683 IPR000014 -
Lac12g0396 1118 Gene3D - 200 559 IPR029016 -
Lac12g0396 1118 SMART gaf_1 219 408 IPR003018 GO:0005515(InterPro)
Lac12g0396 1118 FunFam Phytochrome 609 740 - -
Lac12g0396 1118 Gene3D PAS domain 74 322 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0396 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1014 Lac-Chr10:8170386 Lac12g0396 Lac-Chr12:4469365 3.40E-302 dispersed
Lac12g0396 Lac-Chr12:4469365 Lac6g0061 Lac-Chr6:490572 0.00E+00 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g703 Blo02g00140 Blo15g00444 . . . . . . . Cmo19g00869 . . . . Sed05g2128 Cpe15g00685 . Bhi05g01475 Tan02g0490 Cmetu01g1663 Lac12g0396 . . . Cla02g00291 Cam02g0302 Cec02g0302 Cco02g0306 Clacu02g0294 Cmu02g0290 Cre02g0625 . . Cone8ag1368 Cone12ag1314 . Csa07g00253 . Cme01g00552 . . . . . . . . . . . . Cma19g00854 . Car19g00664 . . . . . . . . . . . . . . . . Lsi11g01345 . Chy01g00529 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac5g0101 . 30 1213 Histidine Kinase Gene Family AT2G17820 65.1 0.0e+00 1446.8
Lac13g1678 . 28 1013 Histidine Kinase Gene Family AT2G01830 71.7 0.0e+00 1348.2
Lac8g2211 . 23 959 Histidine Kinase Gene Family AT2G01830 72.2 0.0e+00 1322.4
Lac4g1833 . 79 1023 Histidine Kinase Gene Family AT2G01830 53.6 3.7e-279 958.7
Lac12g0372 . 1068 2020 Histidine Kinase Gene Family AT2G01830 53.5 1.3e-276 950.3
Lac9g1967 . 283 1238 Histidine Kinase Gene Family AT2G01830 52.4 7.7e-269 924.5
Lac2g0516 . 1 984 Histidine Kinase Gene Family AT5G10720 57.9 5.5e-287 984.6
Lac6g0061 . 129 1248 Histidine Kinase Gene Family AT1G09570 80.7 0.0e+00 1842.8
Lac6g0064 . 1 1130 Histidine Kinase Gene Family AT1G09570 73.9 0.0e+00 1691.8
Lac12g0396 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.6 0.0e+00 1230.3
Lac7g0960 . 27 666 Histidine Kinase Gene Family AT1G09570 60.4 1.7e-229 793.9
Lac10g1014 . 31 1051 Histidine Kinase Gene Family AT2G18790 61.2 0.0e+00 1258.4
Lac6g0061 . 149 1182 Histidine Kinase Gene Family AT2G18790 53.7 0.0e+00 1094.7
Lac7g0960 . 13 666 Histidine Kinase Gene Family AT2G18790 84.2 0.0e+00 1094.0
Lac12g0396 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.6 7.9e-314 1073.9
Lac6g0064 . 7 1065 Histidine Kinase Gene Family AT2G18790 51.5 1.7e-311 1066.2
Lac7g0961 . 45 414 Histidine Kinase Gene Family AT2G18790 70.0 3.2e-156 550.4
Lac12g0396 . 12 1114 Histidine Kinase Gene Family AT5G35840 62.2 0.0e+00 1382.9
Lac6g0061 . 137 1242 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1119.0
Lac7g0960 . 21 668 Histidine Kinase Gene Family AT5G35840 58.7 9.3e-225 778.1
Lac10g1014 . 32 1113 Histidine Kinase Gene Family AT4G16250 59.0 0.0e+00 1300.0
Lac6g0061 . 136 1243 Histidine Kinase Gene Family AT4G16250 52.8 0.0e+00 1140.6
Lac12g0396 . 26 1113 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1115.5
Lac6g0064 . 8 1126 Histidine Kinase Gene Family AT4G16250 50.7 0.0e+00 1089.7
Lac7g0960 . 3 666 Histidine Kinase Gene Family AT4G16250 79.6 7.1e-308 1054.3
Lac7g0961 . 45 475 Histidine Kinase Gene Family AT4G16250 71.0 6.0e-182 636.0
Lac10g1014 . 15 1113 Histidine Kinase Gene Family AT4G18130 64.0 0.0e+00 1404.0
Lac7g0960 . 3 666 Histidine Kinase Gene Family AT4G18130 63.2 1.5e-235 813.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005493 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 7 1 40