Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac12g0413 | ATGGGCCTCTCCAGTCTCCCAGCTCCATCTGAAGGAGTCATTAACGCGCTTCTTGTAAACACTGCACTATCCATTTCCATGTTCAAATGCATTGTTCGTTTGATTCTTCACATTGTAGGAATTCGTCTCTCATCGCCATCATCCTTGGTCCCATCATCAGATTCCTTGGAAAATTCCTCAGAGTTAGGAGATTCCAATTTTGGTTCCTCTTGGAGTTATATTGAGATGTTTCGGAACCGATATTCTACGATCAGGTTTGATGAAGTACAGGGATCCGAACATCGTGAACATGACTGCTCAGTCTGCTTAACTCAGTTTGAACCTGAGTCGGAGATAAATCACTTATCTTGTGGCCATCTTTTTCACTCAGAATGCTTGGAGAAGTGGCTGGATTACTGGAACGTTACATGTCCTCTTTGCAGAACTCCTCTAATGTCCGAAGAAGAGAAGTCGTGCTTTTGGTGA | 465 | 43.44 | MGLSSLPAPSEGVINALLVNTALSISMFKCIVRLILHIVGIRLSSPSSLVPSSDSLENSSELGDSNFGSSWSYIEMFRNRYSTIRFDEVQGSEHREHDCSVCLTQFEPESEINHLSCGHLFHSECLEKWLDYWNVTCPLCRTPLMSEEEKSCFW | 154 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 4625979 | 4626443 | - | Lag0014785.1 | Lac12g0413 | 589010 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac12g0413 | 154 | ProSiteProfiles | Zinc finger RING-type profile. | 99 | 141 | IPR001841 | - | |
| Lac12g0413 | 154 | Pfam | Ring finger domain | 98 | 141 | IPR001841 | - | |
| Lac12g0413 | 154 | SUPERFAMILY | RING/U-box | 91 | 145 | - | - | |
| Lac12g0413 | 154 | PANTHER | - | 1 | 154 | IPR044249 | - | |
| Lac12g0413 | 154 | SMART | ring_2 | 99 | 140 | IPR001841 | - | |
| Lac12g0413 | 154 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 69 | 146 | IPR013083 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac12g0413 | Lac-Chr12:4625979 | Lac7g0223 | Lac-Chr7:1758530 | 2.30E-09 | dispersed | |
| Lac12g0413 | Lac-Chr12:4625979 | Lac9g1923 | Lac-Chr9:39014446 | 8.90E-09 | wgd | |
| Lac12g0413 | Lac-Chr12:4625979 | Lac9g1941 | Lac-Chr9:39211618 | 7.00E-54 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac12g0413 | K16285 | - | csv:101215843 | 253.832 |