Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0413 ATGGGCCTCTCCAGTCTCCCAGCTCCATCTGAAGGAGTCATTAACGCGCTTCTTGTAAACACTGCACTATCCATTTCCATGTTCAAATGCATTGTTCGTTTGATTCTTCACATTGTAGGAATTCGTCTCTCATCGCCATCATCCTTGGTCCCATCATCAGATTCCTTGGAAAATTCCTCAGAGTTAGGAGATTCCAATTTTGGTTCCTCTTGGAGTTATATTGAGATGTTTCGGAACCGATATTCTACGATCAGGTTTGATGAAGTACAGGGATCCGAACATCGTGAACATGACTGCTCAGTCTGCTTAACTCAGTTTGAACCTGAGTCGGAGATAAATCACTTATCTTGTGGCCATCTTTTTCACTCAGAATGCTTGGAGAAGTGGCTGGATTACTGGAACGTTACATGTCCTCTTTGCAGAACTCCTCTAATGTCCGAAGAAGAGAAGTCGTGCTTTTGGTGA 465 43.44 MGLSSLPAPSEGVINALLVNTALSISMFKCIVRLILHIVGIRLSSPSSLVPSSDSLENSSELGDSNFGSSWSYIEMFRNRYSTIRFDEVQGSEHREHDCSVCLTQFEPESEINHLSCGHLFHSECLEKWLDYWNVTCPLCRTPLMSEEEKSCFW 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4625979 4626443 - Lag0014785.1 Lac12g0413 589010

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0413 154 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Lac12g0413 154 Pfam Ring finger domain 98 141 IPR001841 -
Lac12g0413 154 SUPERFAMILY RING/U-box 91 145 - -
Lac12g0413 154 PANTHER - 1 154 IPR044249 -
Lac12g0413 154 SMART ring_2 99 140 IPR001841 -
Lac12g0413 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 146 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0413 K16285 - - csv:101215843 253.832
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0413 Lac-Chr12:4625979 Lac7g0223 Lac-Chr7:1758530 2.30E-09 dispersed
Lac12g0413 Lac-Chr12:4625979 Lac9g1923 Lac-Chr9:39014446 8.90E-09 wgd
Lac12g0413 Lac-Chr12:4625979 Lac9g1941 Lac-Chr9:39211618 7.00E-54 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g735 . Blo15g00434 Bda06g00433 Bda13g00587 . Bpe15g00763 Bma03g00660 . . . Cma02g00241 Cma20g00706 . . . Cpe15g00675 Cpe04g00657 Bhi05g01499 . . Lac12g0413 Hepe02g0325 . . . . . . . . . . . . . . Csa07g00239 Chy11g00731 Cme01g00567 . Blo13g00447 Bda14g00663 . . Bpe07g00667 Bma02g01295 Bma12g00872 Sed01g0593 Cmo02g00242 . . . . Car19g00652 . . Bhi10g01292 Tan05g0995 Cmetu11g0663 . Hepe08g0373 . . . . . . . . . Lsi11g01333 Csa06g00974 Chy01g00540 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g1808 . 82 568 C3H Transcription Factor Family AT2G31510 76.6 2.3e-231 798.9
Lac4g1746 . 77 566 C3H Transcription Factor Family AT2G31510 77.0 7.3e-230 793.9
Lac4g1746 . 60 522 C3H Transcription Factor Family AT2G31770 59.7 6.1e-169 591.7
Lac6g1808 . 51 542 C3H Transcription Factor Family AT2G31770 56.5 1.4e-168 590.5
Lac6g1808 . 65 527 C3H Transcription Factor Family AT2G31760 58.5 3.7e-168 589.0
Lac4g1746 . 60 529 C3H Transcription Factor Family AT2G31760 58.1 1.2e-166 583.9
Lac1g2322 . 8 167 C3H Transcription Factor Family AT5G06490 53.0 9.0e-46 181.0
Lac1g2322 . 8 167 C3H Transcription Factor Family AT5G06490 53.0 9.0e-46 181.0
Lac8g2769 . 74 299 C3H Transcription Factor Family AT3G02290 62.0 4.8e-75 278.5
Lac3g0845 . 1 305 C3H Transcription Factor Family AT1G11020 76.3 3.1e-136 482.3
Lac12g2545 . 158 317 C3H Transcription Factor Family AT1G50440 75.6 5.8e-68 255.0
Lac1g0723 . 8 309 C3H Transcription Factor Family AT5G08750 57.8 1.7e-90 330.5
Lac5g2714 . 1 534 C3H Transcription Factor Family AT3G16090 63.1 1.4e-172 603.6
Lac8g2769 . 74 298 C3H Transcription Factor Family AT5G38895 57.5 2.5e-72 270.0
Lac6g0376 . 16 227 C3H Transcription Factor Family AT1G19310 66.8 2.2e-80 296.2
Lac1g2477 . 16 225 C3H Transcription Factor Family AT1G19310 59.8 6.6e-69 258.1
Lac7g0226 . 1 184 C3H Transcription Factor Family AT4G00335 50.8 3.0e-46 182.6
Lac1g2862 . 9 347 C3H Transcription Factor Family AT2G22120 78.0 1.5e-155 546.6
Lac3g0494 . 1 389 C3H Transcription Factor Family AT1G18470 77.1 7.8e-180 627.5
Lac8g1253 . 11 456 C3H Transcription Factor Family AT1G18470 53.7 2.8e-129 459.5
Lac8g1508 . 57 283 C3H Transcription Factor Family AT1G68200 51.7 8.5e-51 198.4
Lac4g1746 . 60 522 C3H Transcription Factor Family AT2G31770 59.7 6.1e-169 591.7
Lac6g1808 . 51 542 C3H Transcription Factor Family AT2G31770 56.5 1.4e-168 590.5
Lac6g1808 . 65 527 C3H Transcription Factor Family AT2G31760 58.5 3.7e-168 589.0
Lac4g1746 . 60 529 C3H Transcription Factor Family AT2G31760 58.1 1.2e-166 583.9
Lac2g1539 . 46 276 C3H Transcription Factor Family AT5G55970 69.4 2.0e-95 346.7
Lac1g0723 . 8 309 C3H Transcription Factor Family AT5G63780 52.9 1.8e-84 310.5
Lac10g2647 . 1 424 C3H Transcription Factor Family AT3G58030 55.5 8.4e-113 404.8
Lac2g1539 . 48 338 C3H Transcription Factor Family AT4G26580 65.5 1.0e-110 397.5
Lac1g1751 . 44 509 C3H Transcription Factor Family AT5G01960 70.4 6.0e-172 601.3
Lac13g1267 . 1 492 C3H Transcription Factor Family AT5G01960 57.3 3.2e-149 525.8
Lac9g1941 . 187 337 C3H Transcription Factor Family AT2G04240 57.6 2.0e-43 172.9
Lac12g0413 . 1 149 C3H Transcription Factor Family AT2G04240 55.8 2.0e-38 156.4
Lac9g2784 . 1 243 C3H Transcription Factor Family AT5G19430 53.3 1.1e-64 244.2
Lac5g2287 . 136 593 C3H Transcription Factor Family AT5G45290 52.0 1.1e-101 368.2
Lac9g2784 . 24 243 C3H Transcription Factor Family AT5G12310 55.3 4.5e-58 222.2
Lac3g0375 . 76 363 C3H Transcription Factor Family AT5G05810 52.8 2.2e-75 280.4
Lac8g2911 . 55 218 C3H Transcription Factor Family AT5G05830 65.2 1.6e-58 223.4
Lac10g3167 . 155 301 C3H Transcription Factor Family AT5G05830 59.9 2.9e-47 186.0
Lac1g1919 . 28 167 C3H Transcription Factor Family AT5G05830 62.2 1.3e-44 177.2
Lac3g0936 . 32 419 C3H Transcription Factor Family AT4G28890 50.4 7.1e-96 348.6
Lac8g2769 . 74 299 C3H Transcription Factor Family AT5G15790 60.3 1.8e-74 276.6
Lac8g2943 . 1 272 C3H Transcription Factor Family AT3G55530 80.2 3.7e-114 408.7
Lac4g2319 . 25 297 C3H Transcription Factor Family AT1G63900 75.5 4.7e-117 418.3
Lac7g0389 . 10 393 C3H Transcription Factor Family AT2G44580 53.6 1.1e-119 427.6
Lac6g0376 . 25 150 C3H Transcription Factor Family AT1G74990 59.8 1.4e-40 163.3
Lac2g0512 . 3 349 C3H Transcription Factor Family AT5G20910 57.3 3.5e-105 379.0
Lac5g2714 . 119 534 C3H Transcription Factor Family AT1G65040 55.0 8.4e-110 394.4
Lac1g2477 . 17 227 C3H Transcription Factor Family AT2G23780 61.2 9.0e-74 274.2
Lac6g0376 . 6 229 C3H Transcription Factor Family AT2G23780 55.7 4.8e-67 251.9
Lac10g2242 . 1 314 C3H Transcription Factor Family AT3G10810 53.3 1.1e-76 285.0
Lac11g2067 . 1 168 C3H Transcription Factor Family AT1G63840 59.1 2.0e-46 183.0
Lac12g1661 . 1 154 C3H Transcription Factor Family AT1G63840 51.2 1.3e-40 163.7
Lac8g1586 . 7 209 C3H Transcription Factor Family AT1G68070 58.3 1.3e-55 214.5
Lac2g0063 . 4 181 C3H Transcription Factor Family AT1G76410 56.6 1.3e-51 200.3
Lac5g0036 . 9 183 C3H Transcription Factor Family AT1G76410 55.6 2.0e-47 186.4
Lac6g1234 . 2 411 C3H Transcription Factor Family AT1G80400 53.3 9.6e-111 397.9
Lac5g0036 . 16 191 C3H Transcription Factor Family AT2G17450 50.5 2.4e-40 162.9
Lac6g1808 . 82 568 C3H Transcription Factor Family AT2G31510 76.6 2.3e-231 798.9
Lac4g1746 . 77 566 C3H Transcription Factor Family AT2G31510 77.0 7.3e-230 793.9
Lac1g2322 . 7 166 C3H Transcription Factor Family AT2G35910 61.7 2.4e-52 203.0
Lac10g2738 . 6 162 C3H Transcription Factor Family AT2G35910 52.8 6.4e-45 178.3
Lac1g0992 . 1 307 C3H Transcription Factor Family AT2G41980 81.8 2.2e-152 535.8
Lac9g2895 . 237 533 C3H Transcription Factor Family AT2G41980 73.2 3.1e-130 462.2
Lac5g3041 . 61 318 C3H Transcription Factor Family AT2G41980 81.4 2.6e-129 459.1
Lac5g3042 . 61 318 C3H Transcription Factor Family AT2G41980 80.6 2.2e-128 456.1
Lac8g2069 . 48 305 C3H Transcription Factor Family AT2G41980 79.5 4.7e-126 448.4
Lac13g0746 . 144 405 C3H Transcription Factor Family AT2G41980 76.3 4.5e-121 431.8
Lac12g0956 . 116 358 C3H Transcription Factor Family AT2G41980 75.7 3.1e-114 409.1
Lac7g0788 . 201 475 C3H Transcription Factor Family AT3G06140 61.3 2.5e-94 343.2
Lac10g3022 . 33 329 C3H Transcription Factor Family AT3G09770 59.0 3.1e-86 316.2
Lac8g0047 . 136 680 C3H Transcription Factor Family AT3G26730 55.9 1.3e-166 584.3
Lac3g0699 . 58 369 C3H Transcription Factor Family AT3G47990 70.2 1.1e-127 453.8
Lac10g0440 . 58 343 C3H Transcription Factor Family AT3G47990 70.8 4.2e-119 425.2
Lac2g0063 . 4 186 C3H Transcription Factor Family AT1G20823 56.3 1.7e-52 203.4
Lac5g0036 . 5 177 C3H Transcription Factor Family AT1G20823 57.5 1.7e-49 193.4
Lac9g1630 . 37 405 C3H Transcription Factor Family AT3G18930 54.2 1.8e-85 313.9
Lac5g0080 . 20 235 C3H Transcription Factor Family AT5G66070 73.6 1.0e-74 277.3
Lac10g3066 . 10 274 C3H Transcription Factor Family AT5G02750 55.1 9.8e-70 261.2
Lac3g0494 . 5 389 C3H Transcription Factor Family AT1G73950 69.9 9.0e-155 544.3
Lac8g1253 . 12 534 C3H Transcription Factor Family AT1G73950 52.5 8.1e-148 521.2
Lac8g1586 . 9 210 C3H Transcription Factor Family AT2G01735 55.1 1.2e-55 214.2
Lac5g0604 . 60 269 C3H Transcription Factor Family AT2G01735 53.8 2.2e-52 203.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001458 3 6 2 3 2 2 3 2 2 3 1 1 3 3 2 3 1 2 4 2 3 2 2 2 1 2 2 3 5 1 73