Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0413 ATGGGCCTCTCCAGTCTCCCAGCTCCATCTGAAGGAGTCATTAACGCGCTTCTTGTAAACACTGCACTATCCATTTCCATGTTCAAATGCATTGTTCGTTTGATTCTTCACATTGTAGGAATTCGTCTCTCATCGCCATCATCCTTGGTCCCATCATCAGATTCCTTGGAAAATTCCTCAGAGTTAGGAGATTCCAATTTTGGTTCCTCTTGGAGTTATATTGAGATGTTTCGGAACCGATATTCTACGATCAGGTTTGATGAAGTACAGGGATCCGAACATCGTGAACATGACTGCTCAGTCTGCTTAACTCAGTTTGAACCTGAGTCGGAGATAAATCACTTATCTTGTGGCCATCTTTTTCACTCAGAATGCTTGGAGAAGTGGCTGGATTACTGGAACGTTACATGTCCTCTTTGCAGAACTCCTCTAATGTCCGAAGAAGAGAAGTCGTGCTTTTGGTGA 465 43.44 MGLSSLPAPSEGVINALLVNTALSISMFKCIVRLILHIVGIRLSSPSSLVPSSDSLENSSELGDSNFGSSWSYIEMFRNRYSTIRFDEVQGSEHREHDCSVCLTQFEPESEINHLSCGHLFHSECLEKWLDYWNVTCPLCRTPLMSEEEKSCFW 154
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 4625979 4626443 - Lag0014785.1 Lac12g0413 589010
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0413 154 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Lac12g0413 154 Pfam Ring finger domain 98 141 IPR001841 -
Lac12g0413 154 SUPERFAMILY RING/U-box 91 145 - -
Lac12g0413 154 PANTHER - 1 154 IPR044249 -
Lac12g0413 154 SMART ring_2 99 140 IPR001841 -
Lac12g0413 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 146 IPR013083 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0413 Lac-Chr12:4625979 Lac7g0223 Lac-Chr7:1758530 2.30E-09 dispersed
Lac12g0413 Lac-Chr12:4625979 Lac9g1923 Lac-Chr9:39014446 8.90E-09 wgd
Lac12g0413 Lac-Chr12:4625979 Lac9g1941 Lac-Chr9:39211618 7.00E-54 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0413 K16285 - csv:101215843 253.832