Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0415 ATGGGTTACATATGTGACTTTTGTGGTCATCAAAGGTCGATTGTTTACTGCCGATCCGATGCTGCAGCTTTGTGCTTATCTTGTGACCGTAATGTTCACTCTGCTAATGCCTTGTCAAGGCGCCATTCAAGGACGTTGTTATGTGATAGGTGCCATTCACAACCAGCATTTGTTAGATGTCCTGAAGAGAGTATTTCTCTTTGTCAAAATTGTGATTATATAGGGCATAGCTCATCTGCCTCCATTTCGTCTCGAAAGAGGCAACCAATCAATTGTTACTCAGGCTGCCCGACCGCTGCAGAGCTCTCATCTATCTGGTCATTTGTTCTAGATCTCCCTTCTGTGAGCGACGCTTGTGAGCAAGAATTAGGATTGATGAGCATTGCTGAAAATAGTGCAGTAAATGCCTGGGGCCCTGATGATAAAGCTGGTCAAAATGTATCAGGTGTAGATGAAACCAATGAATTCTCAAATGTGGATAAATCAATTTGGTATGGGTCCTCTTCAATGCCTCAATATTTATCCAAGCCTCACATTATGGACCAACCAATTACTATTGATGCGACTTCACCCGAGTTGCACTGTCCTGGAGGAGAAGGTCCTGGACTCGACATTGAAGATGACCTCTACGAGAGTTTGAATATGGATGAAGATAGTTTGAATATTGAAAATTATGAAGAACTATTTGGTGTATCTCTCAGTTATTCTGAAGAATTGTTAGAGAATGGCGGTATTGATAGCTTGTTCAGGATCAAAAACTTATCTGCTGCTAAATCCGGTTGCCCTGGTGCAGCTGCTGCAGAGGGGTCATCCGTTGGTTTAGCTAATAATACGATGCGGCCGGCAAGCAGTAATGCAGCATCTGCAGATTCCATGATGAGTGCAAAGACTGAACCGATTCTTTGTTATAACAATAAGCAAGAGCACTCCAGCCTATCGTTTTCTGGCATGACTGTAGAGAGTAGCACCGGAGAACATCAAGACTGTGGAGCTTCACCAATGCTTCTAATGGGGGAGCCTCCATGGTGTTCTATGACCACTGAGGGTCCCTTCCAGTCATCTAATCGTAGCGATGCTGTAATGCGCTATAAGGAAAAGAAGAAAGCTCGAAAGTTTGAAAAGAAGGTGAGGTATGCCTCTCGCAAGGTGAGGGCCGATACTAGAAGGCGTGTCAAGGGGCGCTTTGTTAAAGCTGGAGAAGCTTATGACTATGATCCACTGAATCAAACCAGAAGCTACTGA 1242 44.12 MGYICDFCGHQRSIVYCRSDAAALCLSCDRNVHSANALSRRHSRTLLCDRCHSQPAFVRCPEESISLCQNCDYIGHSSSASISSRKRQPINCYSGCPTAAELSSIWSFVLDLPSVSDACEQELGLMSIAENSAVNAWGPDDKAGQNVSGVDETNEFSNVDKSIWYGSSSMPQYLSKPHIMDQPITIDATSPELHCPGGEGPGLDIEDDLYESLNMDEDSLNIENYEELFGVSLSYSEELLENGGIDSLFRIKNLSAAKSGCPGAAAAEGSSVGLANNTMRPASSNAASADSMMSAKTEPILCYNNKQEHSSLSFSGMTVESSTGEHQDCGASPMLLMGEPPWCSMTTEGPFQSSNRSDAVMRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFVKAGEAYDYDPLNQTRSY 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4650408 4653756 - Lag0014787.1 Lac12g0415 589012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0415 413 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Lac12g0415 413 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Lac12g0415 413 Pfam CCT motif 356 398 IPR010402 GO:0005515(InterPro)
Lac12g0415 413 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 403 - -
Lac12g0415 413 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270(InterPro)
Lac12g0415 413 CDD Bbox1_BBX-like 4 47 IPR049808 -
Lac12g0415 413 ProSiteProfiles CCT domain profile. 356 398 IPR010402 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0415 Lac-Chr12:4650408 Lac9g2075 Lac-Chr9:40369862 2.70E-52 dispersed
Lac13g0539 Lac-Chr13:3946418 Lac12g0415 Lac-Chr12:4650408 4.70E-13 transposed
Lac7g1303 Lac-Chr7:12599608 Lac12g0415 Lac-Chr12:4650408 5.00E-21 transposed
Lac12g0415 Lac-Chr12:4650408 Lac9g1940 Lac-Chr9:39196669 4.70E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23018 PF06203 CCT 2.70E-16 CL0281 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0415 - - - 0.0