Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0422 ATGTACACCACAAAGTCTTTGGAGACGGAGGGTTTCATATTTCCCTTTTGCGGTGGGAGGGTGATCGTCGGATTATGGATACTGTGTTTGATCGATTTGTATTACATTGTGGAATGTGGGTTCCGAATTGGATTTGATTTTCGTTTTTTTCCTGATTCGCATGCAGTTGTTCTCATGGCTTCGGAAAGTACCAAGGAACTTCTGTCTGGTTCTTCAGACAACAAAAACGCTAAATCTGAAACATCCTCCTCGGACAATCCTCCACAGGCAGCACCCCAAAGAACTAGCTCTATATTTGACGACCTGCCTCAAGACAATCCTTTTGATTTCTCATCCATGACTGATATTCTTAATGATCCTAGCATCAAAGCATTGGCTGAACAGATAGCAAAAGATCCTTCATTCAACCAGATGGCTGAGCAGCTTCAACAATTTCAGAGTCCACCAGCTCAAGAAGGAATCCAGTTTGATCCTCAACAATACTTTGCCACCATGCAGCAAGTCATGCAGAATCCTCATTTTATGTCTATGGCAGAGCGTCTTGGTAACACATTAATGCAGGATCCATCCATGTCTCGCATGTTTGAGAGTTTTGCTAATCCATCAGATGGTGACCAGCTTGAGGAACGAATGGCACAGATTAAAGAGGATCCTTCGTTGAAGCCTATATTGGAAGAGATAGAGACTGGTGGTCTACCTTCCATGATGAAGTACTGGAATGATAAAGAAGTCTTACAAAAGTTAGGAAAAGCAATGGGTCTTCCGGTTCCAGCTGAGGCAGCTACATCTACTGACAATGCTGGACTAGATGATTCTGAAGAACCCGAGAATGATGATGAGTCAGTTGTTCATCATACTGCCAGTACTGGTGATGTTGAGGGGTTAAAAAAGGCGCTTGCATCTGGTGCTGACAAGGATGAAATAGATTCAGAAGGGAGGACGGCATTGCATTTTGCTAGTGGATATGGTGAGGTTGAATGTGCTCAAATCCTCCTCGAGGCTGGAGCGAAAGTGGATGCTTTGGACAAGAATAAAAACACGGCCCTTCACTATGCAGCTGGTTACGGCCGAAAAGACTGTGTGGCCCTACTCCTGGAAAACGGCGCTGCTGTTACTCTCACAAACATGGATGGAAAAACTCCAATCGACGTTGCCAAGCTAAACAACCAAAACGAGGTGCTGAAGTTGCTTGAAAAGGACGCCTTCCTGTAA 1212 44.47 MYTTKSLETEGFIFPFCGGRVIVGLWILCLIDLYYIVECGFRIGFDFRFFPDSHAVVLMASESTKELLSGSSDNKNAKSETSSSDNPPQAAPQRTSSIFDDLPQDNPFDFSSMTDILNDPSIKALAEQIAKDPSFNQMAEQLQQFQSPPAQEGIQFDPQQYFATMQQVMQNPHFMSMAERLGNTLMQDPSMSRMFESFANPSDGDQLEERMAQIKEDPSLKPILEEIETGGLPSMMKYWNDKEVLQKLGKAMGLPVPAEAATSTDNAGLDDSEEPENDDESVVHHTASTGDVEGLKKALASGADKDEIDSEGRTALHFASGYGEVECAQILLEAGAKVDALDKNKNTALHYAAGYGRKDCVALLLENGAAVTLTNMDGKTPIDVAKLNNQNEVLKLLEKDAFL 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4718239 4723147 + Lag0014794.1 Lac12g0422 589019

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0422 403 FunFam Ankyrin repeat domain-containing protein 2 349 400 - -
Lac12g0422 403 SUPERFAMILY Ankyrin repeat 271 398 IPR036770 -
Lac12g0422 403 ProSiteProfiles Ankyrin repeat region circular profile. 311 343 - -
Lac12g0422 403 Gene3D - 349 400 IPR036770 -
Lac12g0422 403 ProSiteProfiles Ankyrin repeat profile. 311 343 IPR002110 GO:0005515(InterPro)
Lac12g0422 403 SMART ANK_2a 344 373 IPR002110 GO:0005515(InterPro)
Lac12g0422 403 SMART ANK_2a 311 340 IPR002110 GO:0005515(InterPro)
Lac12g0422 403 SMART ANK_2a 278 307 IPR002110 GO:0005515(InterPro)
Lac12g0422 403 Pfam Ankyrin repeats (3 copies) 335 397 IPR002110 GO:0005515(InterPro)
Lac12g0422 403 ProSiteProfiles Ankyrin repeat region circular profile. 344 375 - -
Lac12g0422 403 MobiDBLite consensus disorder prediction 68 103 - -
Lac12g0422 403 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 160 397 - GO:0030941(PANTHER)|GO:0031359(PANTHER)|GO:0045036(PANTHER)
Lac12g0422 403 MobiDBLite consensus disorder prediction 260 290 - -
Lac12g0422 403 Pfam STI1/HOP, DP domain 210 253 IPR041243 -
Lac12g0422 403 FunFam Ankyrin repeat domain-containing protein 2 271 348 - -
Lac12g0422 403 Gene3D - 271 348 IPR036770 -
Lac12g0422 403 Pfam Ankyrin repeats (many copies) 284 332 IPR002110 GO:0005515(InterPro)
Lac12g0422 403 ProSiteProfiles Ankyrin repeat profile. 344 376 IPR002110 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0422 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0422 Lac-Chr12:4718239 Lac9g1932 Lac-Chr9:39096933 3.90E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g332 . . . . . Bpe12g00164 . . . . Cma02g00314 . Car02g00195 Car20g00595 Sed01g0615 . . Bhi05g01518 Tan02g0522 Cmetu05g1570 Lac12g0422 Hepe02g0332 . . Cla02g00315 Cam02g0322 Cec02g0323 Cco02g0325 Clacu02g0314 Cmu02g0313 Cre02g0645 Cone12ag1280 Cone8ag1351 Cone3ag1265 . . Csa07g00229 . . Blo04g00617 Blo13g00584 . . Bpe15g00922 . Bma03g00654 Bma08g00700 . Cmo02g00308 . . . . . . Cpe05g01326 . . . . . . . Cla02g01042 . . . . . . Lsi11g01322 . Chy01g00551 Cme11g01009
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002762 0 3 2 2 2 2 2 1 1 1 2 1 1 2 2 1 1 3 2 1 2 2 2 2 2 2 2 7 3 1 57