Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0426 ATGGATGAGAAGAGCGAAACCAAAGAGCCATCAAACTTTAATCTCTCATCTTCTGCTTGTCAAATCAGCCCTGCAGAGAAGAGGACACCAATTGAAGTCTTTCAAGTGCCTGCAAGTTCGGGAGATGACCATTCCAAAGGCCAGAGTGATGCCACTCACGAGCAGGATGAGGCAAAATCATCCATCACTTCCTTTTGTCCTGCTGTCAGCAAGGAAGCATCCAGAAAGTGGATGGCATTTGAAAGTGAAAGTTTTGATATTACAAAGACATACACAAAGAACTTCAGTCGAAGCTTTGGGTCATTTTCTACTAAACTCTTGGAAACAAACACGACAAAGAGAACTGAGGAGGTGAAAAAAGATGATGGTTTATCATCGCTGCAACTGACTTATGTTATCTCAGATGCAACAAAACCAGATTGTCCCATTGTGTTTGCCAGCGATAGGTTCTTGGTTATGACTGGATATACATTGGAGGAGGTCATTGGAAGGAACTGCCGGTTTCTTCAAGGACCAGAGACAGATAAGAATGAAGTAGCCAAATTACGAGATGCGATCAGAAAGGGGAATAGCTACTGTGGCAAGCTCTTGAACTATAAGAAGAATGGTACTCCTTTCTGGAATCTTCTCACTATTGGGCCTGTCAAAGATTCCCGTGGCAACATCATCAAATTTATGGGAATGCAGGTTGAGATCGGCAAAAACGCAGAAGAAAAAGAGAAGACCATGAGGTCCATGTCCATTACAGAGGTCCAAGCTGAGAAGGCAATGAGGTCCATTATGGAGATCCAAGCTGTGAAGAGTCTAAGATCTTACGTGCAGTCAAAAAGGCATGATGTTGATAGAAAGTACGAAGAGCCAGAAATAACTGAAGTTGATTATGCTTTGCACAAGGCTGTGGATGATGAGAATATTAGCACACCTGATAACCAAAAGGATAAGTTGAATCTGATAAATGGTCTAAAGGATTGGAACACAGAATCAGGATTATCTGGTCTTGTTTCCTCAAAGGGGTTCAAAGAAAGGACTCTAGGCTCTGCAGTAGTACGTGAAGAAAAGACAGTTGTTGAGACATCAGTTTTGAAGCCTAAGGATGGTGATTGTGTTGCTAAAAGAGAAAGGGACTTACGTCAAGGAATTGAATTGGCAACCACATTGGAACGGATAGAGAAGATATTTTTTATCAGTAACCCAAGACTTCCCGATAATCCTATTATATTTGCATCTGATAGATTTCTTGACTCCACAGAATACACGAGTGAAGAAGTTCTAGGGAGAAACTTTTGGTTTCTTCAGGGACCTGAAACAGATCAAGTAGTTGTCTCAAAGATTAAAGATGCAATTGAAGAGAAGAGAGAAATCACCGTTCAAATAAACAACTATACAAAGAGTGGAAAAAACTTCTTGAATTTATTCCATTTGCAACCCGTGTGTGATAAGAAGGGTGAGGTTCATTACTTCATTGGTGTGCAACTTCATGTAAAACCTTCCAGAGACCAACTTTTAGAACGAACGGAGAATGAAAGTACTAAGCTGGTCAAAGCTATAGCAGAAAATGTTGACAAGGCTGTCCGTGAACTTCCTGATGCCAACTTGAAACCAAAGAACTTGTGGGCAATCTACTGTCAGCCAGTCATACCAAGGCCTCACAAGAAGTATAATTCTTCCTGGATAGCCATACAAAAGATTACCGGTCATGGTGAAGAGATTGGACTCCATCATTTTAAGCCAATAAAACCACTGGGTTTTGGAGACATTGGCAGTGTTCATTTGGTAGAACTGAAAGGAACGGGTGAACTCTTTGCTATGAAGGCAATAGAGAAGTCGGTAATATTAAATCGTAACAAGGTTCACCGAGCATGCATGGAAAGGGAGATCATATCCCTTTTGGATCATCCTTTCATGCCAACACTATACTCTTCATTTCAGACTCCTACGCACATTTTTCTGATTATGGACTTCTGCCCCGGTGGAGAGTTATTTGCATTTCTTGATAAGCAGCCAATGAAAATGTTTACAGAGGATGCCGCTAGGTTCTATGCTGCAGAAGTTGTCATTGCTTTGGAATACCTTCACTGTTTAGGTATTATCTATAGGGACCTAAAACCTGAAAACATTCTACTCCAAAAGGATGGACATATCGTCCTCACTGATTTCGATTTATCGTTCAAGACATCTAAGTTACAAACCATAGAATCTCCCCCATCGAAAAAGACTAAGAGATGTAGGCATAAATCATGGCCAATGTTTGTTGTTGAACCCGTTGTGGAACTAAATTCATTCATTGGAACTGAAGAGTACATTGCTCCGGAGATTATAATAGGAGCAGGCCATAGTAGCTCTATCGACTGGTGGACTCTTGGTGTTTTGCTGTATGAGATGCTCTATGGTCGCACTCCCTTCAAAGGCAAAGACAGGAAGAAAACATTTGCCAATATTTTGTTTAAGGACTTAACCTTCCCCTTTAGTATTCAGGTGAGTCTTGCAGCAAAGCAGCTGATTGATGCACTGCTACAGAGAGACCCTGCACGTCGTCTAGGATCAAGTACTGGTGCCGATGAAATCAAACGACACCCTTTTTTTCGTCAAATAAATTGGCCTAAAATTCGAACCATGATCCCACCATCATCAGAAGTAGCCCTTCAATTAATTGAGAGAGATCCAAAAGCTAATGATTTGAAGTGGGAAGATGGATTGCTCAGTCATTCAATAGGCACTGATGTTTTCTGA 2730 41.1 MDEKSETKEPSNFNLSSSACQISPAEKRTPIEVFQVPASSGDDHSKGQSDATHEQDEAKSSITSFCPAVSKEASRKWMAFESESFDITKTYTKNFSRSFGSFSTKLLETNTTKRTEEVKKDDGLSSLQLTYVISDATKPDCPIVFASDRFLVMTGYTLEEVIGRNCRFLQGPETDKNEVAKLRDAIRKGNSYCGKLLNYKKNGTPFWNLLTIGPVKDSRGNIIKFMGMQVEIGKNAEEKEKTMRSMSITEVQAEKAMRSIMEIQAVKSLRSYVQSKRHDVDRKYEEPEITEVDYALHKAVDDENISTPDNQKDKLNLINGLKDWNTESGLSGLVSSKGFKERTLGSAVVREEKTVVETSVLKPKDGDCVAKRERDLRQGIELATTLERIEKIFFISNPRLPDNPIIFASDRFLDSTEYTSEEVLGRNFWFLQGPETDQVVVSKIKDAIEEKREITVQINNYTKSGKNFLNLFHLQPVCDKKGEVHYFIGVQLHVKPSRDQLLERTENESTKLVKAIAENVDKAVRELPDANLKPKNLWAIYCQPVIPRPHKKYNSSWIAIQKITGHGEEIGLHHFKPIKPLGFGDIGSVHLVELKGTGELFAMKAIEKSVILNRNKVHRACMEREIISLLDHPFMPTLYSSFQTPTHIFLIMDFCPGGELFAFLDKQPMKMFTEDAARFYAAEVVIALEYLHCLGIIYRDLKPENILLQKDGHIVLTDFDLSFKTSKLQTIESPPSKKTKRCRHKSWPMFVVEPVVELNSFIGTEEYIAPEIIIGAGHSSSIDWWTLGVLLYEMLYGRTPFKGKDRKKTFANILFKDLTFPFSIQVSLAAKQLIDALLQRDPARRLGSSTGADEIKRHPFFRQINWPKIRTMIPPSSEVALQLIERDPKANDLKWEDGLLSHSIGTDVF 909
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4741509 4753134 + Lag0014798.1 Lac12g0426 589023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0426 909 Coils Coil 444 464 - -
Lac12g0426 909 Pfam PAS domain 401 490 IPR000014 -
Lac12g0426 909 Pfam PAS domain 137 232 IPR000014 -
Lac12g0426 909 Gene3D PAS domain 367 527 - -
Lac12g0426 909 CDD STKc_phototropin_like 573 875 - -
Lac12g0426 909 Gene3D Transferase(Phosphotransferase) domain 1 659 874 - -
Lac12g0426 909 NCBIfam PAS domain S-box protein 143 240 IPR000014 -
Lac12g0426 909 NCBIfam PAS domain S-box protein 405 490 IPR000014 -
Lac12g0426 909 ProSiteProfiles PAS repeat profile. 378 451 IPR000014 -
Lac12g0426 909 FunFam Putative LOV domain-containing protein 659 873 - -
Lac12g0426 909 ProSiteProfiles PAS repeat profile. 143 189 IPR000014 -
Lac12g0426 909 PANTHER FLIPPASE KINASE 1-RELATED 468 878 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lac12g0426 909 SUPERFAMILY PYP-like sensor domain (PAS domain) 137 230 IPR035965 -
Lac12g0426 909 CDD PAS 401 494 IPR000014 -
Lac12g0426 909 Pfam Protein kinase domain 578 861 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g0426 909 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Lac12g0426 909 SUPERFAMILY Protein kinase-like (PK-like) 552 882 IPR011009 -
Lac12g0426 909 CDD PAS 143 232 IPR000014 -
Lac12g0426 909 Gene3D PAS domain 131 294 - -
Lac12g0426 909 SMART serkin_6 575 861 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g0426 909 Gene3D Phosphorylase Kinase; domain 1 574 658 - -
Lac12g0426 909 SMART pas_2 121 187 IPR000014 -
Lac12g0426 909 SMART pas_2 380 449 IPR000014 -
Lac12g0426 909 SMART pac_2 193 235 IPR001610 -
Lac12g0426 909 SMART pac_2 455 497 IPR001610 -
Lac12g0426 909 MobiDBLite consensus disorder prediction 10 24 - -
Lac12g0426 909 ProSiteProfiles PAC domain profile. 190 244 IPR000700 -
Lac12g0426 909 SUPERFAMILY PYP-like sensor domain (PAS domain) 398 491 IPR035965 -
Lac12g0426 909 ProSiteProfiles Protein kinase domain profile. 575 861 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g0426 909 MobiDBLite consensus disorder prediction 1 62 - -
Lac12g0426 909 ProSitePatterns Serine/Threonine protein kinases active-site signature. 696 708 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0426 Lac-Chr12:4741509 Lac9g2534 Lac-Chr9:43988050 3.30E-236 dispersed
Lac6g2319 Lac-Chr6:40618035 Lac12g0426 Lac-Chr12:4741509 6.00E-16 dispersed
Lac9g2689 Lac-Chr9:45179762 Lac12g0426 Lac-Chr12:4741509 1.10E-19 dispersed
Lac10g3312 Lac-Chr10:46909401 Lac12g0426 Lac-Chr12:4741509 1.10E-55 transposed
Lac3g0658 Lac-Chr3:5116600 Lac12g0426 Lac-Chr12:4741509 2.10E-56 transposed
Lac1g3129 Lac-Chr1:51633641 Lac12g0426 Lac-Chr12:4741509 2.20E-87 wgd
Lac12g0426 Lac-Chr12:4741509 Lac9g1924 Lac-Chr9:39021580 8.00E-283 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85785 PF00069 Pkinase 9.70E-63 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0426 K20715 - csv:101213364 1430.62