Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0438 ATGTCGGTTTCCCAAACCCTAGGTGGCACTTCCAGATGCGGCCGTGCGATCGGCCCTTCCCTTGACAAGATTGTCAAGAACGCAGCCTGGCGTAAGCATTCTCACCTTGTTTCCTCTTGCAAATCCGTTCTCGATAAGCTTGATTCTATTGGGGAGGCTGCTCTTGATCCTGCTTCCCCGCTTGCTGGCCTTTCACCGGCTGATGCGGAGTTTGTGCTCCAACCGCTCCTTTTGGCCCTCGATGCTTCCTATGTCAAGGTTGCTGAGCCTGCGCTTGAGTGCGTCTTCAAATTGTTCTCTCGCGGTCTCTTCCGTGGCGAGATCGAGCGGCCCGATGGCGAGGCGAATTCCGGTGCCAGTTCTATTGTGTATAAGATCGTTGAGTCTGTTTGCAAGTCGGGAGGTCTTGGCGATGAAGGAATTGAGCTCACTGTTCTCAGAGTGTTGCTCTCTGCGGTTCGATGTCCTTGTGTGTTGATCCGCGGGGACTGTTTGGTTAATGTTGTTCGGACTTGTTATAATGTGTATCTCGGTGGCTTAAGTGGTACGAATCAGATCTGTGCAAAATCCGTTCTAGGTCAAATAATGGTCATTGTTTTCAGTAGGGTGGAGGAGGACACCATGGATGTTCCTACGAGGATAATTTCTGTGAGTGAATTGTTGGAATTTACCGATAAGAACTTGAATGAAGGCAATTCTATATATTTTTGCCAGAACTTTATTAATGAGGTGATGGATGCCAGCGAAGGGATTGCGGAGAAGAAACTATATTCATTTTCGGCACAACTGCAGAATGGCAATGCTTCGCCACTGAAACCTGACAATAAAGGTGAATCTGACGTAGGAGAAACGGAAGATGGAGCTGAATCAGGTGGTTGTAGTAAGATTAGGGCGGATGGATTCCATTTGTTTAAGAATTTGTGTAAATTGTCAATGAAATTCTCATCACCGGAGCACCCAGATGATCAGATCCTCTTAAGGGGGAAAATATTGTCTCTGGAACTGCTAAAGGTGGTTATGGATAATGCAGATTCTGTCACTGTTGGTTTCAGGTTTCTCAATGCTATCAAGCAATTTCTCTGCTTATCATTATTAAAAAACAGTGCCCTGTCAGCGATGGCCATCTTCCAGCTTCAATGTTCTATTTTTACAAGCTTGTTGACAAAATTTAGATCAGGATTGAAAGCAGAAATTGGTATCTTTTTTCCCATGCTGATCCTCCGAGTGCTTGAGAATGTACTTAAGCCCAGTTTCTTGCAGAAAATGACCGTGCTCAATTTATTGGATAAGATATCTCAAGACTCACAGATTATGGTCGACATTTTTGTCAACTATGATTGTGATGTTGACTCTCCAAATATTTTCGAGAGGATTGTTAATGGTCTTTTGAAAACTGCTCTTGGACCGCCTTCTGGTTCAACAACAACATTGTCTCCAGCACAGGATGTTACATTTAGGCATGAATCTGTGAAGTGTTTGGTAAGCATCATTAGATCAATGGGCACCTGGATGGACCAACAACTGAAACTAGATGATACATATTTTCTCAAAACTTCTGAGAATGACGCATCACTTGAGAATCAGTTAAGTGGGGAAGAAGCAGCTGCTGTTGACTCTGAGCTCCATCCGGATGGAAATTCTGAGTTCTCAGATGCTGCTACACTTGAGCAACGAAGAGCTTACAAAATTGAACTCCAGAAAGGTATTTCGCTGTTCAATAGGAAACCTTCCAGGGGTATTGAGTTTCTGATTGGCACAAAAAAAGTTGGTGGTTCTCCTGAAGAGGTGGCTTCTTTTCTCAAGAATACTAACGGCCTAAATGAAACAGTCATTGGGGATTATTTGGGTGAAAGGGAGGAATTCCCTTTGAAAGTTATGCATGCTTATGTTGATTCGTTTAATTTTAAAGCAATGGACTTTGGTGAAGCAATAAGGTTTTTCCTGCGAGGCTTCAGGTTACCAGGAGAGGCACAAAAGATTGACCGCATCATGGAGAAGTTTGCTGAGCGGTATTGTAAATGTAACCCTGGTTCATTCACAAGTGCAGATACTGCTTATGTTCTTGCTTATTCTGTAATTATGCTGAACACAGATGCTCATAATAACATGGTGAAAGATAAGATGACAAAAGCTGATTTTATCCGGAATAATCGGGGAATTGATGACGGAAAGGATTTACCTGATGAGTATCTTGGTGCTCTTTATGATCAGATTGTTAGGAATGAAATTAAGATGAATTCTGATTCTTCAGCTTCACAAAGTAAGCAGGCGACTAGCATCAACAAACTTTTGGGCTTGGATGGTATACTCAATCTAGTTTCTTGGAAGCAGACAGAAGAAAAAGCCGTCGGTGCAAACGGGCTTCTTATAAGGCACATACAGGAGCAGTTTAAGGCGAAGTCTGGAAAATCTGAATCTGTTTATCACGCTGTGACTGATGTAACAATATTGAGGTTTATGGTGGAAGTCTGCTGGGGTCCTATGTTGGCGGCATTCAGTGTGACTCTTGACCAAAGTGATGATAAGCTTGCTACTTCTCACTGCTTACTAGGCTTTCGGCATGCTGTGCATGTCACAGCTGTCATGGGTTTGCAGACTCAACGGGACGCTTTTGTGACATCCATGGCTAAGTTTACCTATCTTCATTGTGCTGCAGATATGAAGCAAAAAAATGTTGAAGCTGTGAAGGCTATAATATCAATTGCCATAGAGGATGGTAATTTTCTTCAAGAGGCATGGGAGCACATATTTACATGTCTCTCGAGAATTGAGAATTTACAATTATTGGGAGAGGGTGCACCACCTGATGCATCGTTTTTGACAACACCAAATATTGACATTGAAGAGAAGGCCCTGAAGTCGGTGGGTTTATCATCTCTGAAGAAAAAAGGAGGTCTCCAAAATCCAGCTGTTATGGCTGTTGTTCGTGGAGGTTCATACGACAGCACCTCACTTGGAGTGAATTCTCCAGGACCAGTAACTCCTGAACAGATTAACCACCTCATTTCAAACTTGAATTTGCTGGATCAAATAGGCAATTTTGAGTTGAACCACGTATTTGCTCATAGTCAAAGTTTGAACAGTGAAGCAATAGTAGCATTTGTGAAGGCCCTTTGCAAAGTTGCTATTGCAGAGTTGCAGTCTCCAACAGACCCACGTGTGTTCAGCCTCACTAAATTAGTTGAAGTGGCGCATTACAATATGAACCGCATCAGATTAGTGTGGTCTCGCATGTGGAGTGTTCTCTCTGATTTCTTTGTGTCAGTTGGCTTATCAGAAAATCTGTCAGTTGCAATATTTGTGATGGACTCACTGAGGCAGCTTGCAATGAAATTTTTGGAGCGTGAGGAGCTTGCGAATTATAACTTCCAGAATGAATTTCTGAGACCCTTCGTAATTGTTATGCAGAAAAGCAGCTCCACGGAAATTAGGGAATTGATAGTTCGGTGCATTTCGCAGATGGTTCTCAGTCGCGTCAATAACGTGAAATCTGGATGGAAAAGTGTTTTTATGGTTTTCACTGCTGCTGCTGCTGATGAGCGGAAGAATATTGTCTTGTTGGCTTTCGAAACCATGGAAAAAATAGTTCGAGAATATTTTCCTTATATAACTGAGACCGAAACTACAACATTTACTGATTGTGTTCGATGTCTCATTACTTTCACAAATAGCAGATTTAATAGTGATGTCAGTCTCAATGCCATTGCGTTCCTTCGGTTTTGTGCTGTAAAACTTGCAGAAGGGGGGCTTGTTTGCTATGAGATGGCTGGAGATAATGGTTCATGCAATTCTCCAGATGTACCTGCACCCACACCCGCACCAGCAGATAAGGACGATTATGCTTCCTATTGGGTTCCTTTGCTTGCAGGGCTATCAAAGTTAACATCTGATCCTCGATCACCAATCAGAAAAAGTTCCTTGGAAGTACTTTTTAATATCCTAAAGGATCATGGTCATCTTTTCTCGCGGCAATTTTGGGTTGGTGTTATCAATACCGTAGTGTTCCCCATTTTCAGTTCTTTGCATGACAAGAAAGAAGTGGACGTTAATGAAAATGATGAACATTCAGAAGGAAGTACGTGGGATTCTGATACCTGTGCAGTGGCAGCAGATTGTTTGGTAGATCTGTTTGTTAACTTCTTCAATGTAATACGGTCTCAACTACCTGGCGTGGTAGCGATTCTGACGGGATTCATTAGGAGTTCGATCCAGGGTCCTGCCAGCACGGGCGTTGCTGCGTTAATGCGTTTGGCAGGTGACTTGGGTAAGAGGCTTACCGAAAACGAATGGAGAGAGATTTTTCTTGCTTTGAAGGAAGCGGCCACATCAACCATGCCTGGATTTATCAAGGTCCTGAAAACCATGGATGACGTCAATGTTCCCGGGATCTCTCAATCTTATTATGATGTGGATGTGGCTTCAGATCAAGGTTTGTCAACTGATGGTATCGACGACGATGATCTGCAAACATCCTCCTACATAGTTTCGAGAATGAAGAGTCATATCGCAATGCAACTCCTCATCATACAGGTCATTACTGATCTGTACAAGAACCATACCCAACCTTTCTCAGAAGCCAACATTTCCATCATTCTTGAGATCTTTTCATCCATTGCCACACATGCCCAGAAACTGAATTCTGACACAATCCTTCAGAAGAAGCTACAGAAAGCTTGCTCCATCCTGGAGATTTCCGACCCACCCGTGGTTCACTTCGAAAACGAGTCTTATCAGAGCTACCTCAACTTCCTCCAGAATATGCTCGCAGATAATTCCTTGCTGACTAATCCAACTCTTATAGAAACCGAACTCGTCAAAGTATGTGAACAAATTTTGCTTATTTACTTGAAGTGTACTGGGGCGCCGGTTGAGCAGAAAGAAACCAACCAGCCTGTGCTGCATTGGATCCTTCCTTTGGGCTCAGCAAAGAAGGAGGAACTGGCTGCTCGAACGTCTTTAGTTGTCTCGGCGTTGCAGGTTCTATGCGGGTTCGAAAGGGATCTATTCAAAAGGTGTATTCAACAGCTTTTCCCCTTGTTGGTAGATCTTGTAAGGAGTGAACATAGCTCTGGAGAAGTTCAGGTTGTTTTGAGCAGCATATTTCAATCTTGTATAGGTCCAATAATTATGCAATAA 5136 42.97 MSVSQTLGGTSRCGRAIGPSLDKIVKNAAWRKHSHLVSSCKSVLDKLDSIGEAALDPASPLAGLSPADAEFVLQPLLLALDASYVKVAEPALECVFKLFSRGLFRGEIERPDGEANSGASSIVYKIVESVCKSGGLGDEGIELTVLRVLLSAVRCPCVLIRGDCLVNVVRTCYNVYLGGLSGTNQICAKSVLGQIMVIVFSRVEEDTMDVPTRIISVSELLEFTDKNLNEGNSIYFCQNFINEVMDASEGIAEKKLYSFSAQLQNGNASPLKPDNKGESDVGETEDGAESGGCSKIRADGFHLFKNLCKLSMKFSSPEHPDDQILLRGKILSLELLKVVMDNADSVTVGFRFLNAIKQFLCLSLLKNSALSAMAIFQLQCSIFTSLLTKFRSGLKAEIGIFFPMLILRVLENVLKPSFLQKMTVLNLLDKISQDSQIMVDIFVNYDCDVDSPNIFERIVNGLLKTALGPPSGSTTTLSPAQDVTFRHESVKCLVSIIRSMGTWMDQQLKLDDTYFLKTSENDASLENQLSGEEAAAVDSELHPDGNSEFSDAATLEQRRAYKIELQKGISLFNRKPSRGIEFLIGTKKVGGSPEEVASFLKNTNGLNETVIGDYLGEREEFPLKVMHAYVDSFNFKAMDFGEAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPGSFTSADTAYVLAYSVIMLNTDAHNNMVKDKMTKADFIRNNRGIDDGKDLPDEYLGALYDQIVRNEIKMNSDSSASQSKQATSINKLLGLDGILNLVSWKQTEEKAVGANGLLIRHIQEQFKAKSGKSESVYHAVTDVTILRFMVEVCWGPMLAAFSVTLDQSDDKLATSHCLLGFRHAVHVTAVMGLQTQRDAFVTSMAKFTYLHCAADMKQKNVEAVKAIISIAIEDGNFLQEAWEHIFTCLSRIENLQLLGEGAPPDASFLTTPNIDIEEKALKSVGLSSLKKKGGLQNPAVMAVVRGGSYDSTSLGVNSPGPVTPEQINHLISNLNLLDQIGNFELNHVFAHSQSLNSEAIVAFVKALCKVAIAELQSPTDPRVFSLTKLVEVAHYNMNRIRLVWSRMWSVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIVMQKSSSTEIRELIVRCISQMVLSRVNNVKSGWKSVFMVFTAAAADERKNIVLLAFETMEKIVREYFPYITETETTTFTDCVRCLITFTNSRFNSDVSLNAIAFLRFCAVKLAEGGLVCYEMAGDNGSCNSPDVPAPTPAPADKDDYASYWVPLLAGLSKLTSDPRSPIRKSSLEVLFNILKDHGHLFSRQFWVGVINTVVFPIFSSLHDKKEVDVNENDEHSEGSTWDSDTCAVAADCLVDLFVNFFNVIRSQLPGVVAILTGFIRSSIQGPASTGVAALMRLAGDLGKRLTENEWREIFLALKEAATSTMPGFIKVLKTMDDVNVPGISQSYYDVDVASDQGLSTDGIDDDDLQTSSYIVSRMKSHIAMQLLIIQVITDLYKNHTQPFSEANISIILEIFSSIATHAQKLNSDTILQKKLQKACSILEISDPPVVHFENESYQSYLNFLQNMLADNSLLTNPTLIETELVKVCEQILLIYLKCTGAPVEQKETNQPVLHWILPLGSAKKEELAARTSLVVSALQVLCGFERDLFKRCIQQLFPLLVDLVRSEHSSGEVQVVLSSIFQSCIGPIIMQ 1711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4878576 4888274 - Lag0014810.1 Lac12g0438 589035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0438 1711 MobiDBLite consensus disorder prediction 528 548 - -
Lac12g0438 1711 Gene3D - 636 756 IPR023394 -
Lac12g0438 1711 Pfam C-terminal region of Mon2 protein 1272 1351 IPR032817 -
Lac12g0438 1711 Gene3D - 886 1709 IPR011989 -
Lac12g0438 1711 ProSiteProfiles SEC7 domain profile. 554 741 IPR000904 GO:0005085(InterPro)|GO:0032012(InterPro)
Lac12g0438 1711 SUPERFAMILY ARM repeat 1081 1703 IPR016024 -
Lac12g0438 1711 FunFam Brefeldin A-inhibited guanine nucleotide-exchange 1 636 754 - -
Lac12g0438 1711 Pfam Mon2/Sec7/BIG1-like, HDS 1111 1193 IPR015403 -
Lac12g0438 1711 Pfam BIG2 C-terminal domain 1504 1702 IPR046455 -
Lac12g0438 1711 Pfam Mon2/Sec7/BIG1-like, dimerisation and cyclophilin-binding domain 20 206 IPR032629 -
Lac12g0438 1711 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 17 1656 - GO:0005802(PANTHER)
Lac12g0438 1711 SMART sec7_5 558 743 IPR000904 GO:0005085(InterPro)|GO:0032012(InterPro)
Lac12g0438 1711 Pfam Sec7 domain 562 743 IPR000904 GO:0005085(InterPro)|GO:0032012(InterPro)
Lac12g0438 1711 Pfam Mon2/Sec7/BIG1-like, HUS domain 298 454 IPR032691 -
Lac12g0438 1711 MobiDBLite consensus disorder prediction 267 291 - -
Lac12g0438 1711 SUPERFAMILY Sec7 domain 558 749 IPR035999 GO:0005085(InterPro)|GO:0032012(InterPro)
Lac12g0438 1711 FunFam Brefeldin A-inhibited guanine nucleotide-exchange protein 1 546 634 - -
Lac12g0438 1711 CDD Sec7 561 743 IPR000904 GO:0005085(InterPro)|GO:0032012(InterPro)
Lac12g0438 1711 Gene3D - 546 635 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0438 K18442 - - csv:101212521 3046.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0438 Lac-Chr12:4878576 Lac7g0317 Lac-Chr7:2445980 0.00E+00 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g315 . . . . . Bpe12g00159 . . . Cmo11g01803 . . . . Sed05g2136 Cpe04g00646 Cpe15g00658 Bhi05g01542 Tan02g0540 Cmetu01g0851 Lac12g0438 Hepe02g0345 . . . . . . . . . . . . . . Csa07g00216 . . . Blo13g00462 . . . . . . . . . Cma11g01317 Cma19g00818 Car11g01430 Car19g00635 . . . . . . . . . . . . . . . . Lsi11g01311 . Chy01g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010065 0 1 1 0 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33