Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0452 ATGGCTGTCTTTGTAGCTATCTTAGTCTACTTTGTTCTTTGGCCAACGCCCAGCATCTTTGCGGCTAAGGATGAAGAGTGGAAATCTGCAACTGCAACATACTCCAAAGAAACAGATGGGTCTATAATTACAGAAGGTGCTTGTGGTTATGGAGATCTGCATAAGATTAGCTATGGGAAATATAGTGCTGGACTGAGTACCATGTTGTTTAGTAGAGGGAGTACCTGTGGAGCTTGCTATGAACTTAGATGTGTTGACCACATCTTGTGGTGCTTGCAAGGAAGCCCAACCGTCATTCTAACCGCCACCGACTTCTGCCCTCCCAATTATGGCTTATCTTCTGATTATGGTGGGTGGTGCAATTTCCCCAAAGAACACTTTGAGATGTCAGAGGCAGCATTTGCTGAAATAGCAGAGAAAAAAGCAGATATTGTGCCAGTTCAATATAGGAGGGTGAGGTGTGACAGAAGTGGTGGATTGAGGTTCACAGTCAGTGGGAATTCTCGCTTCTTTCAAGTTCTGATTACTAATGTTGGAATGGATGGTGAACTAGTGGCAGCGAAAGTGAAGGGATCAAGAACAGGGTGGATACCACTGGCGAGGAACTGGGGACAAAACTGGCAAAGCAATGTCAATCTTCTTGGGCAACCTCTCTCTTTCGAAGTTACCTCTAGCAGTGGAAGAGCACTTACTTCCTATGGTGTTGCACCTGGAAACTGGCAGTTCGGGCAGACATTTGAAGGGAAACAATTTTAA 756 45.11 MAVFVAILVYFVLWPTPSIFAAKDEEWKSATATYSKETDGSIITEGACGYGDLHKISYGKYSAGLSTMLFSRGSTCGACYELRCVDHILWCLQGSPTVILTATDFCPPNYGLSSDYGGWCNFPKEHFEMSEAAFAEIAEKKADIVPVQYRRVRCDRSGGLRFTVSGNSRFFQVLITNVGMDGELVAAKVKGSRTGWIPLARNWGQNWQSNVNLLGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5015580 5016669 - Lag0014824.1 Lac12g0452 589049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0452 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Lac12g0452 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 159 IPR007112 -
Lac12g0452 251 Pfam Lytic transglycolase 63 149 IPR009009 -
Lac12g0452 251 Pfam Expansin C-terminal domain 161 237 IPR007117 -
Lac12g0452 251 PRINTS Expansin signature 57 71 IPR002963 GO:0009664(InterPro)
Lac12g0452 251 PRINTS Expansin signature 134 147 IPR002963 GO:0009664(InterPro)
Lac12g0452 251 PRINTS Expansin signature 98 108 IPR002963 GO:0009664(InterPro)
Lac12g0452 251 PRINTS Expansin signature 117 134 IPR002963 GO:0009664(InterPro)
Lac12g0452 251 PRINTS Expansin signature 234 250 IPR002963 GO:0009664(InterPro)
Lac12g0452 251 PRINTS Expansin signature 158 170 IPR002963 GO:0009664(InterPro)
Lac12g0452 251 PRINTS Expansin signature 170 191 IPR002963 GO:0009664(InterPro)
Lac12g0452 251 PRINTS Expansin signature 205 226 IPR002963 GO:0009664(InterPro)
Lac12g0452 251 PRINTS Expansin signature 84 95 IPR002963 GO:0009664(InterPro)
Lac12g0452 251 SUPERFAMILY PHL pollen allergen 156 248 IPR036749 -
Lac12g0452 251 PANTHER EXPANSIN-A15 11 251 IPR002963 GO:0009664(InterPro)
Lac12g0452 251 Gene3D - 13 155 IPR036908 -
Lac12g0452 251 SMART dpbb_1 62 149 IPR007112 -
Lac12g0452 251 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576(InterPro)
Lac12g0452 251 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576(InterPro)
Lac12g0452 251 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576(InterPro)
Lac12g0452 251 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576(InterPro)
Lac12g0452 251 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576(InterPro)
Lac12g0452 251 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576(InterPro)
Lac12g0452 251 Gene3D - 159 251 IPR036749 -
Lac12g0452 251 CDD DPBB_EXPA_N 26 154 - -
Lac12g0452 251 SUPERFAMILY Barwin-like endoglucanases 26 177 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0452 Lac-Chr12:5015580 Lac8g2527 Lac-Chr8:43068512 2.40E-72 dispersed
Lac12g0452 Lac-Chr12:5015580 Lac13g0995 Lac-Chr13:8319658 7.60E-74 transposed
Lac12g0452 Lac-Chr12:5015580 Lac7g2733 Lac-Chr7:46407114 7.60E-74 transposed
Lac12g0452 Lac-Chr12:5015580 Lac9g2465 Lac-Chr9:43539314 7.60E-74 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0452 - - - 0.0