Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0462 ATGAGAGAGGTTGAAGGGAGAAGGCTTTGCCAGGAGTTTTCAGCTGGATATTATGGTCTTTGTACTGTTGGAGGAATGCTCAGTGCTGGAACAACCCATCTCGCTATTACACCTTTTGATGTCTTGAAGGTCAATATGCAGGTAAATCCAATCAAGTACAATGGCATTTCTTCTGGTTTTTCTATTCTTTGGAGGGAACAAGGCCCTTCATCCCTTTGGAGAGGTTGGTCAGGCAAGTTATTCGGATATGGTGTTCAAGGCGGGTTCAAATTCGGTCTCTATGAGTACTTTAAGAAGTTTTACTCTGATTTGCTGGAAGGCCACAGCAGAAGTTCCATATACTTTCTCAGCAGTGCTTCTGCTCAAGTTTTTGCTGATGTTGCCCTCTGTCCTTTTGAAGCTGTCAAGGTCAGAGTCCAGACACAACCCTATTACGCCAAGGGATTGGCTGATGGGTTTCCGAAGTTATACTACAGTGAAGGTCTTTCAGGTTTCTACAGAGGGCTTTTTCCACTTTGGGGGCGAAATCTTCCATTCTCCATGATCATGTTCTCGACATTTGAGCATTCAGTGGACTTCATATACCAAAATATCATTCAGCGTAGAAAGGAAGATTGCTCGAGAACCCAACAGCTCGGCGTTACATGTTTAGCTGGCTATGCGGCTGGAGCTGTTGGTACGGTTGTCTCAAATCCAGCGGATAACGTTGTTTCCTCTCTTTATAATAAGAAGGCTGATAATATAGTGCAGGCAGTGAAGAACATAGGATTTGGCAATCTATTTACTAGAAGCCTTCCTGTCAGAATCACACTTGTTGGTCCTGTTGTTACTTTGCAGTGGTTCTTCTATGACACCATTAAAGTGCTAAGTGGACTGCCTACAAGTGGAGGGCTCAGCAGGCAAATTGAAGAAGCAAAACTATCAACTTAG 930 43.76 MREVEGRRLCQEFSAGYYGLCTVGGMLSAGTTHLAITPFDVLKVNMQVNPIKYNGISSGFSILWREQGPSSLWRGWSGKLFGYGVQGGFKFGLYEYFKKFYSDLLEGHSRSSIYFLSSASAQVFADVALCPFEAVKVRVQTQPYYAKGLADGFPKLYYSEGLSGFYRGLFPLWGRNLPFSMIMFSTFEHSVDFIYQNIIQRRKEDCSRTQQLGVTCLAGYAAGAVGTVVSNPADNVVSSLYNKKADNIVQAVKNIGFGNLFTRSLPVRITLVGPVVTLQWFFYDTIKVLSGLPTSGGLSRQIEEAKLST 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5088383 5093744 - Lag0014834.1 Lac12g0462 589059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0462 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 210 289 IPR018108 -
Lac12g0462 309 Gene3D Mitochondrial carrier domain 21 289 IPR023395 -
Lac12g0462 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 193 IPR018108 -
Lac12g0462 309 FunFam Mitochondrial phosphate carrier protein 1, mitochondrial 19 290 - -
Lac12g0462 309 Pfam Mitochondrial carrier protein 112 195 IPR018108 -
Lac12g0462 309 Pfam Mitochondrial carrier protein 22 102 IPR018108 -
Lac12g0462 309 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 8 298 IPR044677 GO:0005315(InterPro)|GO:0005315(PANTHER)|GO:0031305(PANTHER)|GO:0035435(PANTHER)|GO:1990547(InterPro)
Lac12g0462 309 SUPERFAMILY Mitochondrial carrier 21 285 IPR023395 -
Lac12g0462 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 16 100 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0462 Lac-Chr12:5088383 Lac8g2062 Lac-Chr8:39120965 3.30E-71 dispersed
Lac12g0462 Lac-Chr12:5088383 Lac3g0033 Lac-Chr3:301474 4.90E-83 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0462 K15102 - csv:101219895 583.178