Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac12g0465 | ATGAATATGGTTTGGCTCCTTTTGTTACTCCTCCTTTATATTCAAGGGATTTCAGAAGGGGCCTCAAAACCTGAGGTAGTGAAAGTTGGAGCTATATTTTCACTTAGTTCTGTCAATGGGAAAGTGTCCAAGATTGCCATAGAGGCTGCTGAGAAAGATGTGAATTCTGATCCAAGTGTTCTTGGTGGAAGAAAGTTGTCTATATCTATACATGATGCAAATTACAGTGGATTTCTTGGTATAACTGGAGCAATGAAGTACATGGTGTCTGACACAGTTGCCATCATCGGTCCACAAGATGCTACAATGGCACATATACTCTCACATCTTTCAAATGAACTCCATGTCCCATTATTGTCATATACAGCATTGGACCCGACGCTTGCGACTTTGCAGTATCCGTACTTCATTCAAACAGCTCCAAATGATCAATTCCAGATGACTGCAATTGCAGATATGATTAGTTATTATGGTTGGCATGACATAGTTGTTGTTTTCACTGATGACGATCTATGTCGAAACGGTATGATTGCATTAGGTGATAAACTTGAAGAGAGAGGCTTGAAACTTTCCTCTAAAGTGGCACTTCCCCCTTACCCAACTGCAACTAGAACTCAAGTTCAAGATGAACTGGCAAAGATTAAAATGATGGAATCTCGAGTAATAGTACTATACACATTTTCGAAAACAGGTTTCTTGGTTTTTGAAGTGGCTCAAAGCCTTAGAATGATGGAAGCTGGATTTGTTTGGATAGCCTCTAGTTGGCTGTCAACAGTAATAGATTCTACTTCACCACTTCCCTTGAAAACTGCCAACTCCATCCAAGGAGTTCTTACGCTTCGTTTACACACACCCGATTCGAAAAGGAAGCAATCTTTTATATCTAGCTGGAACAAACTGAGTAATGGCTCCATTGGTTTGAATACATATGGCCTATATGCATATGATACTGTTTGGATGATTGCAAAAGGAGTTAAAAAGTTATTTGATCAAAATGGGACCATCTCATTCTCCAAAGATACAAAAGTCGGTAATCTTAGTGGAGAGAGCTTGGATTTTAGTTCACTAGGCATCTTTAATGAAGGAACGGAACTGCTTAACAATTTATTGAATATCAGCATGACTGGTTTGACAGGCCCTATTCAGTTTCTAGATAGATCCCCTTTACATCCTTCATATGAAATCTTAAATGTTGTCAAATCTGGTATGAAGAGAATTGGATACTGGTCCAACGATTCCGGTTTATCTGTTGTGGCGCCAGAAATGTTTTATGGAAAAGCAGTCAATGATTCAATGTCAACCCAACAGTTAAGCAGCACAGTGTGGCCCGGGGGATCGACAGTAAAGCCGCGTGGCTGGGTTCTTCCCCTCGATGGAAGGCGGTTAAGAATCGGTGTTCCACGCAGAGTTAGTTATCAGCAATTTGTTACACCAGGAAATGGGAATGGCACAATCAAAGGATACTGCATTGATGTGTTCATTGCTGCCATCAATTTGCTTCCTTATGCAGTTAATTATGAGTTCGTTTTGTTTGGAGATGGTGAGGATAATCCTAGCTACTTTGAGCTCGTAAATAAAGTTGCATTGAAAGAATTTGATGCTGCTGTTGGTGACATTGCAATTGTGACTAGTCGGACAAAGATCGTCGATTTTACACAGCCTTATATCGACTCGGGGCTAGTAGTGCTGACCCCTGTCAAGAAGTTGAATTCAAGTCCTTTGGCATTCCTTCGCCCATTCACACCAATGATGTGGGTTGTCACAGCAGCCTTTTTTCTCCTAGTTGGATTTGTTGTGTGGATTTTGGAACATCGAAAAAATGACGAATTCCGAGGACATCCTAGGACGCAACTTGTCACAATCCTTTGGTTTGGCTTCTCTACTATGTTTTTTGCACATAGAGAAAATGTCGTGAGCACGCTCGGCCGATTCGTGCTCGTCGTGTGGCTTTTCGTGGTTCTAATTATCAACTCGAGCTACACTGCTAGTCTGACATCGATTTTCACAGTACAACAACTAAACTCACCTATCACAGGGATTGATTCATTGATAACTAGCAATGTACTTATTGGTTTCCAAGTTGGTTCATTTGCTGAAAGTTATTTAAGTGAGCAACTTAACGTCCAAAAGTCTAGGCTCATTGCTCTTGGATCACCAGAAGAGTATGCTGCTGCCCTCAATAACGGAACCGTCGCCGCTATTGTCGACGAACAGCCATACATCGATCTCTTTCTCACAGAGTATTGCGATTTTTCGATTAGGGGCCAACAGTTCACCAAAAGTGGATGGGGATTTGCATTTCCACGAGACTCACCATTGGCGGTGGACTTATCGACGGCCATTCTCACACTGTCAGAGAACGGCCATCTTCAAAAGATTCACGACAAGTGGTTCTCAAGAAAGTCTTGCGGTTCCGAAGATTCTAATCTCGATTTGGAGCAACTTCACTTGCAGAGCTTCATCGGATTGTTCTCCATCTGTGCCGGCGTCTGTTTATTCGCTCTTCTCCTTCACTTTTGCTTGACGATGTGCCAATTCAACCGCCATTTGAAGCAAGATCCAGAACCTTCGACCAGCGGCGATTCTAGCCCTACGCGTCTGCGAAAATTCTTAGCGTTTGCCGACAAAAAGAAGGATCGAAAGACCAGCTATTCCAAGAGAAAGGTCGAAGATACTTTCTCCACCCAACGTGGAGCCGATGTTTAG | 2706 | 42.31 | MNMVWLLLLLLLYIQGISEGASKPEVVKVGAIFSLSSVNGKVSKIAIEAAEKDVNSDPSVLGGRKLSISIHDANYSGFLGITGAMKYMVSDTVAIIGPQDATMAHILSHLSNELHVPLLSYTALDPTLATLQYPYFIQTAPNDQFQMTAIADMISYYGWHDIVVVFTDDDLCRNGMIALGDKLEERGLKLSSKVALPPYPTATRTQVQDELAKIKMMESRVIVLYTFSKTGFLVFEVAQSLRMMEAGFVWIASSWLSTVIDSTSPLPLKTANSIQGVLTLRLHTPDSKRKQSFISSWNKLSNGSIGLNTYGLYAYDTVWMIAKGVKKLFDQNGTISFSKDTKVGNLSGESLDFSSLGIFNEGTELLNNLLNISMTGLTGPIQFLDRSPLHPSYEILNVVKSGMKRIGYWSNDSGLSVVAPEMFYGKAVNDSMSTQQLSSTVWPGGSTVKPRGWVLPLDGRRLRIGVPRRVSYQQFVTPGNGNGTIKGYCIDVFIAAINLLPYAVNYEFVLFGDGEDNPSYFELVNKVALKEFDAAVGDIAIVTSRTKIVDFTQPYIDSGLVVLTPVKKLNSSPLAFLRPFTPMMWVVTAAFFLLVGFVVWILEHRKNDEFRGHPRTQLVTILWFGFSTMFFAHRENVVSTLGRFVLVVWLFVVLIINSSYTASLTSIFTVQQLNSPITGIDSLITSNVLIGFQVGSFAESYLSEQLNVQKSRLIALGSPEEYAAALNNGTVAAIVDEQPYIDLFLTEYCDFSIRGQQFTKSGWGFAFPRDSPLAVDLSTAILTLSENGHLQKIHDKWFSRKSCGSEDSNLDLEQLHLQSFIGLFSICAGVCLFALLLHFCLTMCQFNRHLKQDPEPSTSGDSSPTRLRKFLAFADKKKDRKTSYSKRKVEDTFSTQRGADV | 901 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 5104674 | 5110704 | - | Lag0014837.1 | Lac12g0465 | 589062 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac12g0465 | 901 | FunFam | Glutamate receptor | 573 | 703 | - | - | |
Lac12g0465 | 901 | Pfam | Ligand-gated ion channel | 800 | 830 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Lac12g0465 | 901 | Gene3D | - | 45 | 390 | - | - | |
Lac12g0465 | 901 | SMART | GluR_14 | 463 | 800 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Lac12g0465 | 901 | Pfam | Bacterial extracellular solute-binding proteins, family 3 | 475 | 583 | IPR001638 | - | |
Lac12g0465 | 901 | SUPERFAMILY | Periplasmic binding protein-like II | 439 | 800 | - | - | |
Lac12g0465 | 901 | MobiDBLite | consensus disorder prediction | 872 | 895 | - | - | |
Lac12g0465 | 901 | FunFam | Glutamate receptor | 699 | 802 | - | - | |
Lac12g0465 | 901 | PIRSF | IGluLR_plant | 1 | 900 | IPR017103 | - | |
Lac12g0465 | 901 | SUPERFAMILY | Periplasmic binding protein-like I | 21 | 453 | IPR028082 | - | |
Lac12g0465 | 901 | FunFam | Glutamate receptor | 457 | 573 | - | - | |
Lac12g0465 | 901 | Gene3D | - | 142 | 415 | - | - | |
Lac12g0465 | 901 | FunFam | Glutamate receptor | 142 | 304 | - | - | |
Lac12g0465 | 901 | Gene3D | - | 717 | 805 | - | - | |
Lac12g0465 | 901 | Gene3D | - | 456 | 572 | - | - | |
Lac12g0465 | 901 | Pfam | Receptor family ligand binding region | 44 | 400 | IPR001828 | - | |
Lac12g0465 | 901 | CDD | PBP1_GABAb_receptor_plant | 28 | 419 | IPR044440 | - | |
Lac12g0465 | 901 | CDD | GluR_Plant | 460 | 798 | - | - | |
Lac12g0465 | 901 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 27 | 876 | IPR015683 | GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER) | |
Lac12g0465 | 901 | Gene3D | - | 573 | 714 | - | - | |
Lac12g0465 | 901 | MobiDBLite | consensus disorder prediction | 872 | 901 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac12g0465 | Lac-Chr12:5104674 | Lac1g3096 | Lac-Chr1:51418323 | 3.50E-262 | dispersed | |
Lac12g0465 | Lac-Chr12:5104674 | Lac9g2058 | Lac-Chr9:40164506 | 6.60E-229 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac12g0465 | K05387 | - | csv:101208602 | 1475.3 |