Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0465 ATGAATATGGTTTGGCTCCTTTTGTTACTCCTCCTTTATATTCAAGGGATTTCAGAAGGGGCCTCAAAACCTGAGGTAGTGAAAGTTGGAGCTATATTTTCACTTAGTTCTGTCAATGGGAAAGTGTCCAAGATTGCCATAGAGGCTGCTGAGAAAGATGTGAATTCTGATCCAAGTGTTCTTGGTGGAAGAAAGTTGTCTATATCTATACATGATGCAAATTACAGTGGATTTCTTGGTATAACTGGAGCAATGAAGTACATGGTGTCTGACACAGTTGCCATCATCGGTCCACAAGATGCTACAATGGCACATATACTCTCACATCTTTCAAATGAACTCCATGTCCCATTATTGTCATATACAGCATTGGACCCGACGCTTGCGACTTTGCAGTATCCGTACTTCATTCAAACAGCTCCAAATGATCAATTCCAGATGACTGCAATTGCAGATATGATTAGTTATTATGGTTGGCATGACATAGTTGTTGTTTTCACTGATGACGATCTATGTCGAAACGGTATGATTGCATTAGGTGATAAACTTGAAGAGAGAGGCTTGAAACTTTCCTCTAAAGTGGCACTTCCCCCTTACCCAACTGCAACTAGAACTCAAGTTCAAGATGAACTGGCAAAGATTAAAATGATGGAATCTCGAGTAATAGTACTATACACATTTTCGAAAACAGGTTTCTTGGTTTTTGAAGTGGCTCAAAGCCTTAGAATGATGGAAGCTGGATTTGTTTGGATAGCCTCTAGTTGGCTGTCAACAGTAATAGATTCTACTTCACCACTTCCCTTGAAAACTGCCAACTCCATCCAAGGAGTTCTTACGCTTCGTTTACACACACCCGATTCGAAAAGGAAGCAATCTTTTATATCTAGCTGGAACAAACTGAGTAATGGCTCCATTGGTTTGAATACATATGGCCTATATGCATATGATACTGTTTGGATGATTGCAAAAGGAGTTAAAAAGTTATTTGATCAAAATGGGACCATCTCATTCTCCAAAGATACAAAAGTCGGTAATCTTAGTGGAGAGAGCTTGGATTTTAGTTCACTAGGCATCTTTAATGAAGGAACGGAACTGCTTAACAATTTATTGAATATCAGCATGACTGGTTTGACAGGCCCTATTCAGTTTCTAGATAGATCCCCTTTACATCCTTCATATGAAATCTTAAATGTTGTCAAATCTGGTATGAAGAGAATTGGATACTGGTCCAACGATTCCGGTTTATCTGTTGTGGCGCCAGAAATGTTTTATGGAAAAGCAGTCAATGATTCAATGTCAACCCAACAGTTAAGCAGCACAGTGTGGCCCGGGGGATCGACAGTAAAGCCGCGTGGCTGGGTTCTTCCCCTCGATGGAAGGCGGTTAAGAATCGGTGTTCCACGCAGAGTTAGTTATCAGCAATTTGTTACACCAGGAAATGGGAATGGCACAATCAAAGGATACTGCATTGATGTGTTCATTGCTGCCATCAATTTGCTTCCTTATGCAGTTAATTATGAGTTCGTTTTGTTTGGAGATGGTGAGGATAATCCTAGCTACTTTGAGCTCGTAAATAAAGTTGCATTGAAAGAATTTGATGCTGCTGTTGGTGACATTGCAATTGTGACTAGTCGGACAAAGATCGTCGATTTTACACAGCCTTATATCGACTCGGGGCTAGTAGTGCTGACCCCTGTCAAGAAGTTGAATTCAAGTCCTTTGGCATTCCTTCGCCCATTCACACCAATGATGTGGGTTGTCACAGCAGCCTTTTTTCTCCTAGTTGGATTTGTTGTGTGGATTTTGGAACATCGAAAAAATGACGAATTCCGAGGACATCCTAGGACGCAACTTGTCACAATCCTTTGGTTTGGCTTCTCTACTATGTTTTTTGCACATAGAGAAAATGTCGTGAGCACGCTCGGCCGATTCGTGCTCGTCGTGTGGCTTTTCGTGGTTCTAATTATCAACTCGAGCTACACTGCTAGTCTGACATCGATTTTCACAGTACAACAACTAAACTCACCTATCACAGGGATTGATTCATTGATAACTAGCAATGTACTTATTGGTTTCCAAGTTGGTTCATTTGCTGAAAGTTATTTAAGTGAGCAACTTAACGTCCAAAAGTCTAGGCTCATTGCTCTTGGATCACCAGAAGAGTATGCTGCTGCCCTCAATAACGGAACCGTCGCCGCTATTGTCGACGAACAGCCATACATCGATCTCTTTCTCACAGAGTATTGCGATTTTTCGATTAGGGGCCAACAGTTCACCAAAAGTGGATGGGGATTTGCATTTCCACGAGACTCACCATTGGCGGTGGACTTATCGACGGCCATTCTCACACTGTCAGAGAACGGCCATCTTCAAAAGATTCACGACAAGTGGTTCTCAAGAAAGTCTTGCGGTTCCGAAGATTCTAATCTCGATTTGGAGCAACTTCACTTGCAGAGCTTCATCGGATTGTTCTCCATCTGTGCCGGCGTCTGTTTATTCGCTCTTCTCCTTCACTTTTGCTTGACGATGTGCCAATTCAACCGCCATTTGAAGCAAGATCCAGAACCTTCGACCAGCGGCGATTCTAGCCCTACGCGTCTGCGAAAATTCTTAGCGTTTGCCGACAAAAAGAAGGATCGAAAGACCAGCTATTCCAAGAGAAAGGTCGAAGATACTTTCTCCACCCAACGTGGAGCCGATGTTTAG 2706 42.31 MNMVWLLLLLLLYIQGISEGASKPEVVKVGAIFSLSSVNGKVSKIAIEAAEKDVNSDPSVLGGRKLSISIHDANYSGFLGITGAMKYMVSDTVAIIGPQDATMAHILSHLSNELHVPLLSYTALDPTLATLQYPYFIQTAPNDQFQMTAIADMISYYGWHDIVVVFTDDDLCRNGMIALGDKLEERGLKLSSKVALPPYPTATRTQVQDELAKIKMMESRVIVLYTFSKTGFLVFEVAQSLRMMEAGFVWIASSWLSTVIDSTSPLPLKTANSIQGVLTLRLHTPDSKRKQSFISSWNKLSNGSIGLNTYGLYAYDTVWMIAKGVKKLFDQNGTISFSKDTKVGNLSGESLDFSSLGIFNEGTELLNNLLNISMTGLTGPIQFLDRSPLHPSYEILNVVKSGMKRIGYWSNDSGLSVVAPEMFYGKAVNDSMSTQQLSSTVWPGGSTVKPRGWVLPLDGRRLRIGVPRRVSYQQFVTPGNGNGTIKGYCIDVFIAAINLLPYAVNYEFVLFGDGEDNPSYFELVNKVALKEFDAAVGDIAIVTSRTKIVDFTQPYIDSGLVVLTPVKKLNSSPLAFLRPFTPMMWVVTAAFFLLVGFVVWILEHRKNDEFRGHPRTQLVTILWFGFSTMFFAHRENVVSTLGRFVLVVWLFVVLIINSSYTASLTSIFTVQQLNSPITGIDSLITSNVLIGFQVGSFAESYLSEQLNVQKSRLIALGSPEEYAAALNNGTVAAIVDEQPYIDLFLTEYCDFSIRGQQFTKSGWGFAFPRDSPLAVDLSTAILTLSENGHLQKIHDKWFSRKSCGSEDSNLDLEQLHLQSFIGLFSICAGVCLFALLLHFCLTMCQFNRHLKQDPEPSTSGDSSPTRLRKFLAFADKKKDRKTSYSKRKVEDTFSTQRGADV 901
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5104674 5110704 - Lag0014837.1 Lac12g0465 589062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0465 901 FunFam Glutamate receptor 573 703 - -
Lac12g0465 901 Pfam Ligand-gated ion channel 800 830 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lac12g0465 901 Gene3D - 45 390 - -
Lac12g0465 901 SMART GluR_14 463 800 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lac12g0465 901 Pfam Bacterial extracellular solute-binding proteins, family 3 475 583 IPR001638 -
Lac12g0465 901 SUPERFAMILY Periplasmic binding protein-like II 439 800 - -
Lac12g0465 901 MobiDBLite consensus disorder prediction 872 895 - -
Lac12g0465 901 FunFam Glutamate receptor 699 802 - -
Lac12g0465 901 PIRSF IGluLR_plant 1 900 IPR017103 -
Lac12g0465 901 SUPERFAMILY Periplasmic binding protein-like I 21 453 IPR028082 -
Lac12g0465 901 FunFam Glutamate receptor 457 573 - -
Lac12g0465 901 Gene3D - 142 415 - -
Lac12g0465 901 FunFam Glutamate receptor 142 304 - -
Lac12g0465 901 Gene3D - 717 805 - -
Lac12g0465 901 Gene3D - 456 572 - -
Lac12g0465 901 Pfam Receptor family ligand binding region 44 400 IPR001828 -
Lac12g0465 901 CDD PBP1_GABAb_receptor_plant 28 419 IPR044440 -
Lac12g0465 901 CDD GluR_Plant 460 798 - -
Lac12g0465 901 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 27 876 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Lac12g0465 901 Gene3D - 573 714 - -
Lac12g0465 901 MobiDBLite consensus disorder prediction 872 901 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0465 Lac-Chr12:5104674 Lac1g3096 Lac-Chr1:51418323 3.50E-262 dispersed
Lac12g0465 Lac-Chr12:5104674 Lac9g2058 Lac-Chr9:40164506 6.60E-229 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0465 K05387 - csv:101208602 1475.3