Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0474 ATGGCATCGGCGCAGAACGCAGCGCCGAACGTGGATCTCTTCGATGCCTACTTTCGACGTGCCGATTTGGACCGTGATGGTCGAATTAGTGGCGCTGAAGCGGTTGCCTTCTTTCAAGGCTCTGGATTGCCCAAACAGGTCCTTGCTCAGATTTGGGCACTTTCGGACCCGAGACAAATTGGCTTCCTTGGTCGGGCGGAGTTTTATAATGCCCTCAGGCTGGTCACTGTAGCACAGAGTAAGAGGGAACTAACTCCTGAGATTGTGAAAGCAGCATTGTTTAGCCCAGCTGCAGCTAAAATACCAGCACCACAAATAAATTTGAATACTCAACCTGCATCTCAGTTCAATTCTACTCCAGCATTACCTCCACCTCAGAGTGGCATTGTTACTCCAACGCCCTCCCAAAGTTCTGGGTTGGAATCTCAGGTTCCTCGAAATGTCACTGCAAATGCTCCGCTGGTTTCTTCTAGAGAGAGTCAATTAGTGAGGCCTCCATTGGCAACTTCAAATTCTGCTTTCCGTCCAGCACAGGGATTTCCAGGAGTGGGTACTGCATCGGGTCCGCCGCCAACAAATTCTAGCATCTCAAATGATTGGTTAAGTGAACGTGCTGGCGGAGTTCAGGTGACACCCTCACAACCTCCAAATAGAGGAGTCAGTCCTGCTGGAACACAGGTCGGATTTGGACAATCAAGTGTAGGATTAACAACTTCTCTACCCCCAAGGCCTCAGACGGCTCCTGAAGTAAAGTCGGCTACATCATTTCCTATGGACAGTAAAGTGCAAGGTATTTCTGGAAATGGGACTGCTTCTGGATCATATTTTGGAGGAGATATGTTTGCTACAAACCCAGTTCCCTCAAAACAAGATGTCTCAGATAAATTGTCTGCTGGCAATAAAACTTCCACATCAGTCACTGTTCCTGTATCTTCTGCCACACAACCAATAGTTAGAGCAGGTTCCCTTGATTCTTTGCAAAATTCATTTATGAAACCACCTCTTGCTAATCAGCCCCCACGGAACCAGCCACTTGGGAAGCCCAATCAACACAGCGTATTGCAACCTGCTTCCTCTGGTTTATCAACAGGACCTCAAAATTCTGCTTCTGGACAGTCTCAGCGCCCTTGGCCTAGAATGACACAGACTGATGTGCAGAAGTATACTAAAGTTTTTGTTGAAGTGGATAAAGATAGAGATGGAAAAATTACCGGTGAAGAAGCACGCAACTTGTTCTTAAGTTGGAGACTGCCAAGAGAGGTTTTAAAGCAAGTGTGGGACTTATCCGATCAAGATAATGATAGCATGCTTTCTGTCAGGGAGTTCTGTATCGCACTCTATTTGTTGGAGCGGCATAGGGAAGGGCACATTCTTCCTGCTATGCTTCCTAGCAACATCGTGTTTGATTTTTCCAGCAATGGTCATCCTGTGACTCCAGCTGCATCTAACTATAGCAATGCAGCATGGAGACCCACGGCTGGTTACCAACAGCACCAAGGGGTTCCTGGGTCTGGTAATCAGCATGGAGCTCCTAGAGTTGGAGTACGACCGCCTATACCTGCTGCTGCCTCCCCGGTTGAGGATGAACCACAGACTACTCAACCTAAATCAAAGGTTCCTGTGCTGGAGAAAAATCTTGTTAGTCAACTTAGTACAGAGGAGCAGAACTCCCTCAACTCAAAGTTCCAAGAAGCAGCAGATGCTGAGAAAAAGGTTGAAGAATTGGAGAAAGAAATTTTGGAATCTAGACAGAAAATTGAGTTTTATCGTACTAAAATGCAGGAACTTGTTTTGTACAAGAGCAGATGTGACAATCGGCTGAATGAAATATCTGAAAGAGTGTCTTCAGATAAACGTGAGGTAGAATCCCTTGCTAAGAAATATGAAGAGAAATATAAACAATCTGGTGATGTAGCCTCCAGATTAACCGTTGAAGAATCTACATTCCGTGATATACAGGAGAAGAAGATGGAACTGTATCAGGCGATTGTGAAGATGGAACAAGATGGTAGTGCAGATGGCATTCTTCAGGTTCGTGCTGATCGTATTCAGTCAGATATTGAAGAATTAGTGAAAGCTCTCAATGAACGCTGCAAGAGTTATGGTTTGCGTGCAAAACCAATAACTCTTACAGAACTTCCTTTCGGTTGGCAACCTGGCATCCAAGTGGGCGCTGCTGACTGGGATGAAGATTGGGATAAATTTGAAGAGGAAGGTTTCACTGTTGTCAAGGAGCTCACTCTTGATGTGCAAAATGTCATAGCACCTCCGAAGCAGAAATCTAAGTTGGTGCAAAAAGATAAAGGTTCGGCCATTGACATCCAAAAAGTTACACCTGCACCGGATGCTGATACCAAGGAAGGAGGTTCTACACCAGATGCTGATACCAAGGGAGAGAAACCTCCTATGGATGAAACGGCTATTGAAAATGGTTCCACACACGATAATAAAAGTGAAGATGGGTCAGTCAAAAGTGCTCCTAACAGCCCCTTTGCAAGTAGTGTTATTGGAAGTCCCAAGGAATATGTGGATTCCAACTTTGGGAAGACTGCTGGCTTTGATGCTTCACCCCGTGATAAGGATACTCTAAGTGATCATGGAGGTGCGGGATCTGTGTTTTCTGGTGACAAGAGCTATGACGAACCAGCTTGGGGAACGTTTGATGCAAATGATGATATTGACTCTGTTTGGGGCTTTAACGCAGGAGGTTCCACTAAGACCGACAATGATGTAAACCGAGACCACTATTTTTTCGATTCTGGGGAGTTGGGCTTGAATCCTATCAGAACAGACCCATTCCAGGCTAAGAGAAGCACATTTGCTTTTGATGAGTCTGTTCCTAGCACCCCACTCTTCACGGGCAATTCACCGCATAATTACCACGAGGGATCAGAACCAAGTTTCGACAGCTTCTCAAGGTTTGATTCTTCCAGCGTGCATGATAGTGGGGTTTTTCCTCCAAAGGACGCATTTGCACGATTCGACTCAATGCGCAGCAGTAGAGACTTTGACCAGGGTCCTGGATTCTCATCATTTGGTCAATTCGATACACCGCACAGTAGAGACTTCGATCAGGGTGGATCCTCATCATTGTCACGATTTGATTCAATGCGTAGCAGTAGAGACTTCGATCAGGGTGGATCCTCATCATTGACGCGATTTGATTCAATGCGCAGCAGTAAAGACTTCGACCAGGGATTCCCTTCATTGTCACGATTTGATTCGATGCGCAGCAGCAAAGACTTTGATCAGGGTCATGGATTCCCATCATTCGACGAACCAGATCCTTTTGGATCGGCGGGGCCGTTCAGAGCATCCCTGGATAATCAGACTCCGAAGAAAGGATCACAGAATTGGAGTGCCTTTTAG 3369 45.95 MASAQNAAPNVDLFDAYFRRADLDRDGRISGAEAVAFFQGSGLPKQVLAQIWALSDPRQIGFLGRAEFYNALRLVTVAQSKRELTPEIVKAALFSPAAAKIPAPQINLNTQPASQFNSTPALPPPQSGIVTPTPSQSSGLESQVPRNVTANAPLVSSRESQLVRPPLATSNSAFRPAQGFPGVGTASGPPPTNSSISNDWLSERAGGVQVTPSQPPNRGVSPAGTQVGFGQSSVGLTTSLPPRPQTAPEVKSATSFPMDSKVQGISGNGTASGSYFGGDMFATNPVPSKQDVSDKLSAGNKTSTSVTVPVSSATQPIVRAGSLDSLQNSFMKPPLANQPPRNQPLGKPNQHSVLQPASSGLSTGPQNSASGQSQRPWPRMTQTDVQKYTKVFVEVDKDRDGKITGEEARNLFLSWRLPREVLKQVWDLSDQDNDSMLSVREFCIALYLLERHREGHILPAMLPSNIVFDFSSNGHPVTPAASNYSNAAWRPTAGYQQHQGVPGSGNQHGAPRVGVRPPIPAAASPVEDEPQTTQPKSKVPVLEKNLVSQLSTEEQNSLNSKFQEAADAEKKVEELEKEILESRQKIEFYRTKMQELVLYKSRCDNRLNEISERVSSDKREVESLAKKYEEKYKQSGDVASRLTVEESTFRDIQEKKMELYQAIVKMEQDGSADGILQVRADRIQSDIEELVKALNERCKSYGLRAKPITLTELPFGWQPGIQVGAADWDEDWDKFEEEGFTVVKELTLDVQNVIAPPKQKSKLVQKDKGSAIDIQKVTPAPDADTKEGGSTPDADTKGEKPPMDETAIENGSTHDNKSEDGSVKSAPNSPFASSVIGSPKEYVDSNFGKTAGFDASPRDKDTLSDHGGAGSVFSGDKSYDEPAWGTFDANDDIDSVWGFNAGGSTKTDNDVNRDHYFFDSGELGLNPIRTDPFQAKRSTFAFDESVPSTPLFTGNSPHNYHEGSEPSFDSFSRFDSSSVHDSGVFPPKDAFARFDSMRSSRDFDQGPGFSSFGQFDTPHSRDFDQGGSSSLSRFDSMRSSRDFDQGGSSSLTRFDSMRSSKDFDQGFPSLSRFDSMRSSKDFDQGHGFPSFDEPDPFGSAGPFRASLDNQTPKKGSQNWSAF 1122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5176682 5185253 - Lag0014846.1 Lac12g0474 589071

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0474 1122 MobiDBLite consensus disorder prediction 945 979 - -
Lac12g0474 1122 MobiDBLite consensus disorder prediction 109 143 - -
Lac12g0474 1122 Coils Coil 607 631 - -
Lac12g0474 1122 CDD EH 14 80 IPR000261 GO:0005515(InterPro)
Lac12g0474 1122 PANTHER EH DOMAIN 6 989 - GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006897(PANTHER)|GO:0016197(PANTHER)
Lac12g0474 1122 MobiDBLite consensus disorder prediction 207 261 - -
Lac12g0474 1122 SMART eh_3 2 98 IPR000261 GO:0005515(InterPro)
Lac12g0474 1122 SMART eh_3 376 472 IPR000261 GO:0005515(InterPro)
Lac12g0474 1122 Gene3D - 6 104 - -
Lac12g0474 1122 Pfam Cytoskeletal-regulatory complex EF hand 378 465 IPR000261 GO:0005515(InterPro)
Lac12g0474 1122 ProSiteProfiles EF-hand calcium-binding domain profile. 420 452 IPR002048 GO:0005509(InterPro)
Lac12g0474 1122 MobiDBLite consensus disorder prediction 170 193 - -
Lac12g0474 1122 Gene3D - 379 467 - -
Lac12g0474 1122 SMART efh_1 421 449 IPR002048 GO:0005509(InterPro)
Lac12g0474 1122 SMART efh_1 13 41 IPR002048 GO:0005509(InterPro)
Lac12g0474 1122 SMART efh_1 387 415 IPR002048 GO:0005509(InterPro)
Lac12g0474 1122 MobiDBLite consensus disorder prediction 1003 1075 - -
Lac12g0474 1122 SUPERFAMILY EF-hand 372 467 IPR011992 -
Lac12g0474 1122 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509(InterPro)
Lac12g0474 1122 MobiDBLite consensus disorder prediction 328 383 - -
Lac12g0474 1122 MobiDBLite consensus disorder prediction 1104 1122 - -
Lac12g0474 1122 CDD EH 388 454 IPR000261 GO:0005515(InterPro)
Lac12g0474 1122 Pfam EF hand 15 33 IPR002048 GO:0005509(InterPro)
Lac12g0474 1122 Coils Coil 558 592 - -
Lac12g0474 1122 ProSiteProfiles EH domain profile. 384 467 IPR000261 GO:0005515(InterPro)
Lac12g0474 1122 ProSiteProfiles EH domain profile. 10 100 IPR000261 GO:0005515(InterPro)
Lac12g0474 1122 MobiDBLite consensus disorder prediction 945 986 - -
Lac12g0474 1122 MobiDBLite consensus disorder prediction 495 538 - -
Lac12g0474 1122 MobiDBLite consensus disorder prediction 286 309 - -
Lac12g0474 1122 MobiDBLite consensus disorder prediction 759 880 - -
Lac12g0474 1122 MobiDBLite consensus disorder prediction 999 1122 - -
Lac12g0474 1122 MobiDBLite consensus disorder prediction 788 821 - -
Lac12g0474 1122 SUPERFAMILY EF-hand 11 88 IPR011992 -
Lac12g0474 1122 MobiDBLite consensus disorder prediction 109 124 - -
Lac12g0474 1122 ProSiteProfiles EF-hand calcium-binding domain profile. 383 418 IPR002048 GO:0005509(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0474 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0474 Lac-Chr12:5176682 Lac2g0070 Lac-Chr2:517246 8.30E-181 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g298 . . . . . . . . Cmo19g00819 Cmo11g01788 . . . . Sed05g2162 Cpe04g00633 Cpe15g00643 Bhi05g01580 Tan02g0572 Cmetu01g1669 Lac12g0474 . . . Cla02g00345 Cam02g0354 Cec02g0355 Cco02g0361 Clacu02g0346 Cmu02g0343 Cre02g0675 Cone12ag1298 Cone8ag1333 . . . Csa07g00188 . Cme01g01145 Blo04g00607 Blo13g00472 . Bda14g00649 Bpe15g00782 . Bma03g00639 Bma08g00716 . . . Cma11g01331 Cma19g00799 Car11g01415 Car19g00615 . . . . . . . . . . . . . . . . Lsi11g01287 . Chy01g00592 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004902 2 2 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41