Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0527 ATGCCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTGTTCTCCATTCATCTCTTCGCTCAATCAAGAAGGATTGTATCTTCAGCGAGTCAAACTCGGTCTCTCCGATCCCACTCAGTCCCTCTCTTCATGGAACCCTCGCGACGCCACTCCCTGCAACTGGTCCGGCATCACCTGCGATTCCGTCTCTCGTTCTGTCCTCGCCGTCGACCTCTCCGATTTCCAGCTCGCCGGACCTTTTCCCACCTTCTTCTGTCGCCTTCCTTCTCTCTCTTCTCTCTCTCTTTCCAACAACGCCATTAACGCTTCCCTTCCCGACGAGGTTGCTTCCTGTTCTGGCCTCCAGCGGCTTAACTTGTCGCAGAATCTTCTCGCTGGTTCTATTCCCGATGGCCTGTCCAAGATCTCGAATCTTCGGTTCCTGGATCTCTCTGGAAATAACTTCTCCGGGGAGATTCCGCCGAGTTTCGGTGGGTTTCGCCGGCTTGAGACGCTGAATTTGGTTGATAATCTTTTGAATGGTACTGTTCCGGGGAGTTTGGGTAACGTTTCGAGTTTGAAAGAACTTCAACTTGCGTATAATCCGTTTGCCAGGAGTGAGATTCCGAGTGCATTTGGGAACTTGACGAAGCTGGAGATTCTCTGGCTTGCTAACTGTAATCTTGCCGGTCAGATTCCGGAAAGCGTTGGCTGGATGACTCGGCTTAAGAATCTGGACTTGTCGAACAATAGACTCAGTGGGTCGATTCCGGTGTCAATTACTCAAATGAAAAGTCTAGTTCAAATCGAACTGTTTAACAACTCGCTCTCCGGCGAGTTGCCTTTGGGACTGTCTAATTTAACTGCACTGCGACGAATTGATGTGTCGATGAATCACTTAACTGGAACAATTCCGGATGAGCTTTGTGCATTACAGCTTGAGTCGCTAAATTTGTTCGAGAATCGATTGGAAGGGCATTTGCCGGAGAGCATCGTTAGGTCCCCATACTTGAATGAGCTTAAATTGTTTAACAACAAGCTTAGTGGACAGTTACCCAGTAAACTCGGCCAAAACTCGCCATTAGTGCATCTTGATGTTTCATACAACGGATTTTCTGGCGGAATCCCGGAAAACTTGTGTGCAAAAGGGGCATTGGAAGAGCTTATATTGATTTACAATTCGTTTTCCGGTAGAATCCCGGCGAGCCTTGGAAAATGCACGAGCTTAAGCCGGATTCGGATGAGGAACAACAAACTCTCGGGTTCGGTTCCTGATGATTTTTGGGGTCTGCCTAATGTGTATTTGCTTGAGCTCGTCGAGAATTCGCTCTCTGGGTCTATTTCTTCGATGATATCTACCGCTAAGAATCTCTCTATTTTGATGATCTCAGAAAATCAATTTTCAGGGTCAATTCCGGACGAGATTGGGTCGTTAAGCAATCTGACTGAACTTTCAGGTAGCGACAATATGTTTTCCGGTCAAATCCCGGCAACTTTGGTGAAGTTAAGCCTATTGGGTAAATTCGATCTAAGCGAGAACAAACTTTCTGGTGAATTACCGAAGAGAATTGGAGCTCTGAAAAGGCTAAGCGAGCTAAATTTGGCAAACAACAAGCTATCTGGCAATATCCCGAGTGAGATTGGAAGCCTGCCTGTGCTTAATTATCTCGATCTCTCTAGTAACCATCTCAGTGGAAGCATACCTCTTGAATTGCAGAATTTGAAACTGAATTTGCTAAATCTGTCGAACAATCTGTTGTCAGGAGTACTTCCTCCTCTTTATGCCGAGGAGTTTTACAGAGATAGCTTTCTGGGTAATCCAGCTTTGTGCAATAACGCCCCAAGTCTTTGTCCTCGCGTTGGAAAAGGCAAAAACCAAGGCTACTGGCTTCTCAGAGCCATTTTTCTACTTGCTATCGTTGTTTTTGTTGTTGGGGTCATTTGGTTCTTCTTTAAGTACAAGGAATTCAAGAAGAACAAGAAAGGAATTGTCATTTCCAAGTGGAGATCATTCCACAAACTTGGTTTCAGTGAATATGAAATCGCAGACTGTCTCAGTGAAGACAAAGTCATCGGAAGTGGAGCATCCGGCAAAGTGTACAAAGTTGTGCTGAAAAACGGCGAGGTTGTGGCCGTGAAGAAGCTATGGCAAGGAACAAGAAAAGAGGACACCAGTTTGGATTCAGAGAAAGATGGATTTGAGGCTGAAGTTGAGACATTGGGAAAGATCCGCCACAAGAATATTGTAAGGTTATGGTGCTGCTGCAACACCGGCAATTGCAAGCTGCTTGTTTACGAATACATGCCTAATGGGAGCTTGGGAGATTTGCTGCACGGCAGCAGAAAGCGCTTTTTGGATTGGCCTACAAGGTATAAAGTAGCTTTGGATGCAGCTGAAGGGCTCTCTTACTTGCATCACGACTGTGCTCCTCCAATTGTTCATAGGGATATAAAATCCAACAATATACTGCTTGATTCTGAGTTTGGAGCTAGAGTTGCAGACTTTGGTTTGGCCAAGTTTTTGAATGCTGGCAAGGGCTCAGAATCAATGTCTGTCATTGCTGGTTCTTGCGGTTATATTGCACCAGAATATGCTTATACTTTAAGAGTAAACGAAAAGAGCGACATCTACAGCTTTGGGGTGGTGATTTTAGAGCTGGTGACTGGGAGGCCTCCAAATGATCCAGAATTTGGAGACAAAGACTTGGCAAAGTGGGTCTATACCGCTGTTGACCGCAGAGGACTTGACCAAGTGATCGATCCTAAACTCGGTTCCGAATACAAGGAAGAAATATACAGAGTCCTCGACGTGGGACTTCTCTGCACGAGCTCACTCCCCATGAACCGCCCCTCAATGAGAAGAGTCGTCAAACTGCTGCAGGAGGCTGCCACAGAAACCAGACCCGCCATTGTTACAAAGGAAGCCAAACTTTCTCCATATTTTTCCTAG 2937 45.8 MPSLLLLLLLLLLLLCSPFISSLNQEGLYLQRVKLGLSDPTQSLSSWNPRDATPCNWSGITCDSVSRSVLAVDLSDFQLAGPFPTFFCRLPSLSSLSLSNNAINASLPDEVASCSGLQRLNLSQNLLAGSIPDGLSKISNLRFLDLSGNNFSGEIPPSFGGFRRLETLNLVDNLLNGTVPGSLGNVSSLKELQLAYNPFARSEIPSAFGNLTKLEILWLANCNLAGQIPESVGWMTRLKNLDLSNNRLSGSIPVSITQMKSLVQIELFNNSLSGELPLGLSNLTALRRIDVSMNHLTGTIPDELCALQLESLNLFENRLEGHLPESIVRSPYLNELKLFNNKLSGQLPSKLGQNSPLVHLDVSYNGFSGGIPENLCAKGALEELILIYNSFSGRIPASLGKCTSLSRIRMRNNKLSGSVPDDFWGLPNVYLLELVENSLSGSISSMISTAKNLSILMISENQFSGSIPDEIGSLSNLTELSGSDNMFSGQIPATLVKLSLLGKFDLSENKLSGELPKRIGALKRLSELNLANNKLSGNIPSEIGSLPVLNYLDLSSNHLSGSIPLELQNLKLNLLNLSNNLLSGVLPPLYAEEFYRDSFLGNPALCNNAPSLCPRVGKGKNQGYWLLRAIFLLAIVVFVVGVIWFFFKYKEFKKNKKGIVISKWRSFHKLGFSEYEIADCLSEDKVIGSGASGKVYKVVLKNGEVVAVKKLWQGTRKEDTSLDSEKDGFEAEVETLGKIRHKNIVRLWCCCNTGNCKLLVYEYMPNGSLGDLLHGSRKRFLDWPTRYKVALDAAEGLSYLHHDCAPPIVHRDIKSNNILLDSEFGARVADFGLAKFLNAGKGSESMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRPPNDPEFGDKDLAKWVYTAVDRRGLDQVIDPKLGSEYKEEIYRVLDVGLLCTSSLPMNRPSMRRVVKLLQEAATETRPAIVTKEAKLSPYFS 978
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5678506 5681964 + Lag0014899.1 Lac12g0527 589124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0527 978 Gene3D Ribonuclease Inhibitor 23 177 IPR032675 -
Lac12g0527 978 Gene3D Ribonuclease Inhibitor 178 280 IPR032675 -
Lac12g0527 978 ProSiteProfiles Protein kinase domain profile. 681 966 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g0527 978 PRINTS Leucine-rich repeat signature 546 559 - -
Lac12g0527 978 PRINTS Leucine-rich repeat signature 238 251 - -
Lac12g0527 978 Pfam Protein kinase domain 683 904 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g0527 978 Gene3D Phosphorylase Kinase; domain 1 664 763 - -
Lac12g0527 978 Pfam Leucine rich repeat 91 151 IPR001611 GO:0005515(InterPro)
Lac12g0527 978 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 764 972 - -
Lac12g0527 978 SMART LRR_typ_2 138 161 IPR003591 -
Lac12g0527 978 SMART LRR_typ_2 522 546 IPR003591 -
Lac12g0527 978 SMART LRR_typ_2 235 259 IPR003591 -
Lac12g0527 978 SMART LRR_typ_2 283 307 IPR003591 -
Lac12g0527 978 SMART LRR_typ_2 186 210 IPR003591 -
Lac12g0527 978 SMART LRR_typ_2 90 114 IPR003591 -
Lac12g0527 978 ProSitePatterns Protein kinases ATP-binding region signature. 687 710 IPR017441 GO:0005524(InterPro)
Lac12g0527 978 ProSitePatterns Serine/Threonine protein kinases active-site signature. 808 820 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac12g0527 978 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Lac12g0527 978 FunFam Leucine-rich receptor-like protein kinase family protein 204 302 - -
Lac12g0527 978 SUPERFAMILY RNI-like 72 369 - -
Lac12g0527 978 Gene3D Ribonuclease Inhibitor 281 616 IPR032675 -
Lac12g0527 978 ProSiteProfiles Leucine-rich repeat profile. 237 259 IPR001611 GO:0005515(InterPro)
Lac12g0527 978 PANTHER RECEPTOR-LIKE PROTEIN 55 381 955 - -
Lac12g0527 978 SUPERFAMILY Protein kinase-like (PK-like) 674 955 IPR011009 -
Lac12g0527 978 Gene3D Transferase(Phosphotransferase) domain 1 764 973 - -
Lac12g0527 978 FunFam Receptor-like protein kinase HSL1 664 763 - -
Lac12g0527 978 Pfam Leucine Rich Repeat 357 376 IPR001611 GO:0005515(InterPro)
Lac12g0527 978 Pfam Leucine Rich Repeat 286 307 IPR001611 GO:0005515(InterPro)
Lac12g0527 978 Pfam Leucine Rich Repeat 525 546 IPR001611 GO:0005515(InterPro)
Lac12g0527 978 Pfam Leucine Rich Repeat 188 211 IPR001611 GO:0005515(InterPro)
Lac12g0527 978 Pfam Leucine Rich Repeat 237 258 IPR001611 GO:0005515(InterPro)
Lac12g0527 978 Pfam Leucine Rich Repeat 549 570 IPR001611 GO:0005515(InterPro)
Lac12g0527 978 Pfam Leucine Rich Repeat 404 426 IPR001611 GO:0005515(InterPro)
Lac12g0527 978 Pfam Leucine Rich Repeat 452 474 IPR001611 GO:0005515(InterPro)
Lac12g0527 978 Pfam Leucine Rich Repeat 213 233 IPR001611 GO:0005515(InterPro)
Lac12g0527 978 FunFam Receptor-like protein kinase HSL1 308 615 - -
Lac12g0527 978 SMART serkin_6 681 977 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g0527 978 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 23 186 - -
Lac12g0527 978 SUPERFAMILY L domain-like 357 606 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0527 Lac-Chr12:5678506 Lac1g3361 Lac-Chr1:53234483 1.10E-11 dispersed
Lac12g0527 Lac-Chr12:5678506 Lac10g0915 Lac-Chr10:7306255 1.60E-164 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85789 PF00069 Pkinase 1.00E-44 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0527 - - - 0.0