Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0528 ATGTCTGAAGAACAAGCAATCTCAAATGCTTTCATTTGCAGCATCCCAACACTTGGATCCAACAATAACATCCCTCCTGTTCTAAAGAAGAAGAGGAATCTCCCTGGAAATCCAGGCAAGAAGCTTTATCCTGAAGCGGAAGTCGTGGCGTTGTCACCCAAGACCCTAATGGCGACTAACCGATTCTTGTGTGAGATATGTGGGAAGGGTTTTCAGAGGGATCAAAACCTACAGCTTCATAGGAGAGGACACAACCTTCCATGGAAGCTGAAGCAAAGAAGCAATAGCAACAAAGAGCCAAGGAAGAGAGTTTATGTTTGTCCAGAGAAAAGCTGTGTCCACCACCATCCTTCAAGGGCTCTTGGAGACCTCACAGGAATTAAAAAGCACTTTTGCAGGAAGCACGGCGAGAAGAAGTGGAAGTGCGAGAAGTGCTCCAAGAAATATGCTGTGCAGTCAGACTGGAAGGCACACTCCAAAACTTGTGGCACCAAAGAGTATAAATGTGACTGTGGGACTCCATTCTCAAGGAGAGATAGCTATGTAACTCACAGAGCATACTGTGTGGCATTAGCAGAAGAAACAGCAAGACTAAATGCAGCATCATCAACCATTGCCAACAACTCAATGGCAGCCACAGCTGATAGCAACAACAACAACATCAACTACCATTTCTTAAAGCCCACCAACAACAACAACATTATTTCTCACCAATACTTCCCCTCCAACTTTTTCAAGCCAGATCATGATCATCAAACTGCCCAAATCTTCCTCAACAACAACAATTCTCTCACACCCTTTTTGATTCCCCAATTAGCAGCTCCAAGTTCCCAACAAATCAACAATCTCCAAGACAACAACATCATCATCAACAACAGCAATTTCCATCATCATCACCCTCTTCTTTCAGTTCCTTCCTTGTACAGCCATGAGGAACAACAACAAGCAGCCCATCAAGCTGCATCAGCCAACATGTCAGCCACTGTTCTGCTGCAAAAGGCTGCACAAATTGGAGTGACAAGCTCCACAACAACAGACCCATCATCATCATCATCACCATTGATGGCCAGTTTTGGCTTGAAATTGATTGATGGGAAAGCCTTGTTTTCAGGGCTTTATGGCTCAATAATGAACTACCACTCAAACTCTTTGCCAAGCTGTTCAAGCCTTGAAAATGGTGGTGGAGATCAAGACTCTGCTGCCAGTAACTTGGTCCAGATGTACCCTGCTGCTAAGAGAATTAGGCACACTGTTAGTGAAGAAAGTGTCACTGGTGGAGAAGGAGAGACAAGGGATTTCTTGGGTGTGGGCATGCACACCATATGCCATCCATCTGCTGTGAATGGATGGATCTGA 1356 44.84 MSEEQAISNAFICSIPTLGSNNNIPPVLKKKRNLPGNPGKKLYPEAEVVALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSNSNKEPRKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYKCDCGTPFSRRDSYVTHRAYCVALAEETARLNAASSTIANNSMAATADSNNNNINYHFLKPTNNNNIISHQYFPSNFFKPDHDHQTAQIFLNNNNSLTPFLIPQLAAPSSQQINNLQDNNIIINNSNFHHHHPLLSVPSLYSHEEQQQAAHQAASANMSATVLLQKAAQIGVTSSTTTDPSSSSSPLMASFGLKLIDGKALFSGLYGSIMNYHSNSLPSCSSLENGGGDQDSAASNLVQMYPAAKRIRHTVSEESVTGGEGETRDFLGVGMHTICHPSAVNGWI 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5686990 5689660 - Lag0014900.1 Lac12g0528 589125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0528 451 Pfam Zinc finger, C2H2 type 62 84 IPR013087 -
Lac12g0528 451 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 166 204 - -
Lac12g0528 451 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 440 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lac12g0528 451 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 101 135 - -
Lac12g0528 451 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Lac12g0528 451 Gene3D Classic Zinc Finger 58 85 - -
Lac12g0528 451 SMART c2h2final6 62 84 IPR013087 -
Lac12g0528 451 SMART c2h2final6 140 160 IPR013087 -
Lac12g0528 451 Gene3D Classic Zinc Finger 118 197 - -
Lac12g0528 451 SUPERFAMILY beta-beta-alpha zinc fingers 61 160 IPR036236 -
Lac12g0528 451 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Lac12g0528 451 FunFam protein indeterminate-domain 5, chloroplastic-like 118 197 - -
Lac12g0528 451 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 139 163 - -
Lac12g0528 451 FunFam protein indeterminate-domain 12-like 41 111 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0528 Lac-Chr12:5686990 Lac1g2114 Lac-Chr1:42624689 1.00E-81 dispersed
Lac12g0528 Lac-Chr12:5686990 Lac9g2004 Lac-Chr9:39675566 3.10E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23023 None None None None Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0528 K25870 - csv:101207997 538.495