Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0542 ATGGCACAGTTGCCGCCGAAGATCCCAAATATGGCGCCTAATTGGCCGGAATTTTCCCGTCAGAAAATCCCTTCCATGGAAACCTTTGCACCCATCACCACCAACGCGTCGGCGACGGCGACGGTTACTCACCAGAATCCTTCTTGGGTCGATGAATTTCTTGATTTTTCCTCTGCCAGACGTGGGTCCCACCGGCGCTCCGTGAGCGATTCCATCACGTTCCTCGAAATGCCGATGCTGGAGGAGGATTGCCGGGGCTCCGCCGCCGCGCCGCCACCCGGATCCGGCTCCGGCGACCGGAATGAATTCGATAGGTTCGACGATGAGCAGTTCATGTCGATGTTCAACGATGAAATCTCCGGCGCCGTGGCGCCCACCGTGTCGTCGTCGAACCCCTCCACGCCGTCCGATCACAACAGCATTAACGACGAGAAGGACGGCCAAAACGACGGCAAGAAAAACCAGAACAAAAACGAATCCGACGAAGTACAGAGCCAACAGCAATCGGAAACTCAAACACAATCCAATTCCACGGCGGCGGCGGCTTCCGCCGATCGGATAACAGACCCGAAAAGAGTCAAAAGAATTCTGGCAAATCGGCAATCGGCGCAAAGATCACGAGTGAGAAAGCTTCAATACATATCAGAACTAGAACGAAGCGTCACATCGTTACAGGCTGAAGTTTCGGTGCTGTCGCCGCGAGTGGCGTTTTTGGACCACCAGAGATTGCTTCTCAACGTCGACAACAGTGCTCTGAAGCAAAGAATCGCCGCCCTTGCACAGGATAAGATTTTTAAAGATGCTCATCAAGAGGCACTAAAAAGAGAGATAGAGAGACTGAGGCAAGTATATCATCAACAAAACATCAAGAAGATGGAAAACAATAACACAGCACCATCGCCATCGCCACCGACACCGTCGCCTCCCGCCATGGGCACAGCCACCGACGTCGCCAAACTTCCGAACATAGATCAAACAGAGCAAGTTCGAAACGTCGTGGTTTAG 1005 53.03 MAQLPPKIPNMAPNWPEFSRQKIPSMETFAPITTNASATATVTHQNPSWVDEFLDFSSARRGSHRRSVSDSITFLEMPMLEEDCRGSAAAPPPGSGSGDRNEFDRFDDEQFMSMFNDEISGAVAPTVSSSNPSTPSDHNSINDEKDGQNDGKKNQNKNESDEVQSQQQSETQTQSNSTAAAASADRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQNIKKMENNNTAPSPSPPTPSPPAMGTATDVAKLPNIDQTEQVRNVVV 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5835041 5837524 + Lag0014914.1 Lac12g0542 589139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0542 334 SMART brlzneu 187 251 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g0542 334 SUPERFAMILY Leucine zipper domain 191 245 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g0542 334 MobiDBLite consensus disorder prediction 319 334 - -
Lac12g0542 334 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 189 241 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g0542 334 Coils Coil 270 290 - -
Lac12g0542 334 MobiDBLite consensus disorder prediction 291 334 - -
Lac12g0542 334 CDD bZIP_plant_RF2 192 242 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g0542 334 MobiDBLite consensus disorder prediction 139 159 - -
Lac12g0542 334 MobiDBLite consensus disorder prediction 123 138 - -
Lac12g0542 334 MobiDBLite consensus disorder prediction 84 104 - -
Lac12g0542 334 Pfam Basic region leucine zipper 188 236 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g0542 334 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 194 209 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g0542 334 MobiDBLite consensus disorder prediction 160 183 - -
Lac12g0542 334 MobiDBLite consensus disorder prediction 123 192 - -
Lac12g0542 334 PANTHER BASIC LEUCINE ZIPPER 34 1 310 IPR052483 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0045893(PANTHER)
Lac12g0542 334 FunFam Basic leucine zipper 61 190 263 - -
Lac12g0542 334 Gene3D - 190 296 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0542 Lac-Chr12:5835041 Lac4g1383 Lac-Chr4:32106202 7.90E-10 dispersed
Lac2g1219 Lac-Chr2:9914359 Lac12g0542 Lac-Chr12:5835041 9.50E-30 transposed
Lac2g1712 Lac-Chr2:15878178 Lac12g0542 Lac-Chr12:5835041 2.00E-08 transposed
Lac7g2863 Lac-Chr7:47761746 Lac12g0542 Lac-Chr12:5835041 1.70E-08 transposed
Lac12g0542 Lac-Chr12:5835041 Lac9g2018 Lac-Chr9:39761196 4.60E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23024 PF00170 bZIP_1 4.00E-09 CL0018 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0542 - - - 0.0