Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0544 ATGGAGCGAGGATCCAGTGGAAGCAGTGCCGGTGGCAGCACCAGCTCTTTCATTCCTGGATTTCCAAACAACAACAATAATGATAACTCTAACACTGCTCTTTCTTCTTCAGCCATCATGATGATCGATACTACTAATCCCCAAATATTGGAACAACACAACAATAACAACAACAGCGACAGCAGCAACAACAATAACAAGATGTTTTTGCCTTTGTCTTGGTCGTCTGCTACTCCCCACAACGCTCCAAGGGTTTCTGCTTTTGTCCCTCAGCTCAATAACAACAATGATCTTCATAACAACTCCACTTGCCGAGCTAAAATCATGGCTCATCCCCTCTTTCCTCGCCTCCTCGCAGCCTACGTCAACTGCCAGAAGGTGGGTGCACCGCCGGAAGTGGTGGCGAGGCTAGAGCAGGCGTGCGCGGTGGCCGCCGGGAGCTGTAGGGTGGCGGCACGTGGGGATGATCCAGCGCTGGATCAGTTCATGGAAGCCTACTGTGAAATGTTGACCAAGTACGAACAAGAGTTGACCAAACCTTTCAAAGAAGCAATGGTTTTCTTCTCAAGAATCGAGTCTCAGCTCAAAGCCCTAGCTGTTTCTTCTTCTACTTCTGATGGTTGTGAACTGGTCGGGCAAAACGAGTGTTCGAAGGAGGTCGAGGTCGATATGAATGAAAACTACATTGACCCTCAAGCTGAAGAGAAGGAACTCAAAGGCCAACTTTTGCGCAAATACAGCGGATATCTCGGCAGCCTAAAGCAAGAGTTTCTTAAAAAGAAGAAGAATGGAAAGCTTCCGAAAGAAGCTCGACAGCAACTTCTCGACTGGTGGAGCCGACACTATAAATGGCCATATCCCTCGGAGTCGCAAAAGGTGGCGCTGGCGGAGTCGACGGGGCTGGACTTGAAGCAGATCAATAACTGGTTCATCAACCAAAGAAAGCGCCATTGGAAGCCATCAGAGGATATGCAGTTTGTGGTGATGGATGCTGCTCATCCACACTACTATTTGGACAATGTCATCTGCAATCCCTTCTCTATGGATTGTTCTTCCACTCTTTTCTGA 1068 48.31 MERGSSGSSAGGSTSSFIPGFPNNNNNDNSNTALSSSAIMMIDTTNPQILEQHNNNNNSDSSNNNNKMFLPLSWSSATPHNAPRVSAFVPQLNNNNDLHNNSTCRAKIMAHPLFPRLLAAYVNCQKVGAPPEVVARLEQACAVAAGSCRVAARGDDPALDQFMEAYCEMLTKYEQELTKPFKEAMVFFSRIESQLKALAVSSSTSDGCELVGQNECSKEVEVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICNPFSMDCSSTLF 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5849358 5852543 - Lag0014916.1 Lac12g0544 589141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0544 355 SMART KNOX1_2 102 146 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac12g0544 355 Pfam KNOX1 domain 105 142 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac12g0544 355 CDD homeodomain 269 321 IPR001356 GO:0003677(InterPro)
Lac12g0544 355 SMART HOX_1 259 324 IPR001356 GO:0003677(InterPro)
Lac12g0544 355 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 100 327 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac12g0544 355 ProSiteProfiles ELK domain profile. 237 257 IPR005539 GO:0003677(InterPro)
Lac12g0544 355 SUPERFAMILY Homeodomain-like 259 334 IPR009057 -
Lac12g0544 355 ProSitePatterns 'Homeobox' domain signature. 295 318 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lac12g0544 355 SMART KNOX2_2 149 200 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac12g0544 355 Gene3D - 262 324 - -
Lac12g0544 355 Pfam KNOX2 domain 154 198 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac12g0544 355 ProSiteProfiles 'Homeobox' domain profile. 257 320 IPR001356 GO:0003677(InterPro)
Lac12g0544 355 MobiDBLite consensus disorder prediction 1 32 - -
Lac12g0544 355 Pfam ELK domain 237 258 IPR005539 GO:0003677(InterPro)
Lac12g0544 355 FunFam Homeobox protein knotted-1-like 2 262 324 - -
Lac12g0544 355 SMART ELK_2 237 258 IPR005539 GO:0003677(InterPro)
Lac12g0544 355 Pfam Homeobox KN domain 277 316 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0544 Lac-Chr12:5849358 Lac1g3180 Lac-Chr1:51962719 4.00E-105 dispersed
Lac12g0544 Lac-Chr12:5849358 Lac2g0436 Lac-Chr2:3206245 2.00E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23025 PF03791 KNOX2 4.20E-22 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0544 - - - 0.0