Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0558 ATGAACCCGCGATTTGGGTTTTTGTTGCTGGTTTTGAGTTCTGTTCTACTGGGTGCTGATTCAAGGTGCCCTAGAACATGCGAATTAGCTTTAGGTTCGTACTTTGTACCGCAGGGCAGCGATTTGACTCGCATCTCCAACTTGTTTCAGTTGCCTTCTCCTGATATCATCGTCAGCTACAACAAAGGTACAGTTCCCAACAGAGACACTGTTTTGGCCGGCGACAGGATCAACGTTCCATTCTCCTGCGACTGTATTAGTGATACTTTTCTGGGTCATACGTTTCAGTACACGATTAACAATCAAGATACTTACGATACAATTGCGAATACATTCTATTCGGGCCTGACTACGGTGGAAATGTTACGGAGATTCAATACTTTTGATCCTCTTAATCTTACTCCTGGTAGCAGTTTGAATGTTGTGGTGAACTGCTCCTGTGGGAATCCTGATGTTTCGAAGACATATGGGCTGTTTGTCACTTTCCCAATTCGATCCAATGATAGTTGGGAAAGCTTGCAAAGAGATACAAATGTCAGCTCGGATTTGCTGCGGCAGTACAATCCGGGTGTGAATTTCAGCGAAGGAAATTTGATCTTTATTCCAGGCAGAGGACTTGCAGGTGGAGCCATTGCAGGCATAATTATAGGTGCAGTACTTGGGGTTCTACTTGTAGCAGGCGTCATTTACATTGTCATTCGAAGGAGGAAGTCAAAAAGTTCAAAATTGCTGGCGTTCTCCCAAGATTTATCTTCTCAAGACGGGCGTGGTTTTGCCCCTGGAAGTTCCTTGGATAAATCTACTGAATCAAATGGTCAAGGTGGTGGTGGTATAGCTGCCATTACAGGTATTACTGTGGAGAAATCAGTGGATTTCTCATATGAAGAACTTGCAAAGGCCACCGACGACTTTAGCTTGGCTAACAAAATTGGGGAAGGTGGTTTCGGATCGGTTTATTATGCAGAACTCAGAGGAGAGAAAGCAGCAATAAAGAAGATGGATATGCAAGCTACAAAGGAGTTCCTTGCAGAAATTAAGGTTCTAACACGCGTTCACCACTTGAACCTGGTGCGTTTGATAGGCTATTGTGTAGAGAATTCTCTGTTCCTAGTCTATGAGTACATTGAGAATGGCAACCTAAGCCAACATTTACGTGGCACAGGTCATGATCCATTGCCATGGCCTTCTAGGGTCCAAATAGCCCTTGATTCTGCTCGAGGCCTTGAGTATATCCACGAGCACACCGTTCCCGTTTATATTCATCGTGATATTAAATCTGCCAACATATTGATTGACAAAAACTTTCATGGAAAGGTTGCAGACTTTGGGTTAACCAAGTTGACTGAAGTTGGAAACTCGTCGCTTCCCACTCGTCTTGTGGGCACATTTGGATATATGCCTCCTGAATATGCACAATATGGCGACGTTTCTCCGAAGATTGACGTATATGCTTTCGGTGTCGTTCTTTACGAGCTTATTTCAGCCAAGGAAGCTGTAGTCAAAACAAACAGAGCCAGCGCGATCAATGAATCGAAAGGCCTTGTCGCTTTGTTTGAAGATGTCCTGAACCAACCCGACGCAAAAGAGAACCTTCACAAGCTAGTCGACCCTAGACTCGAAGAGAACTACCCTCTTGATTCGGTTTTCAAGATGGCTCAGCTTGCCAAGGCATGTACACATGAGAACCCACAGCTACGCCCAAGCATGAGATCCATTGTGGTTGCTCTCATGACACTTTCTTCTGCAACAGAGGATTGGGACGTCGGCTCTTTCTACGAAAACCAAGCTCTCGTCAACTTGATGTCGGGAAGGTAG 1815 44.79 MNPRFGFLLLVLSSVLLGADSRCPRTCELALGSYFVPQGSDLTRISNLFQLPSPDIIVSYNKGTVPNRDTVLAGDRINVPFSCDCISDTFLGHTFQYTINNQDTYDTIANTFYSGLTTVEMLRRFNTFDPLNLTPGSSLNVVVNCSCGNPDVSKTYGLFVTFPIRSNDSWESLQRDTNVSSDLLRQYNPGVNFSEGNLIFIPGRGLAGGAIAGIIIGAVLGVLLVAGVIYIVIRRRKSKSSKLLAFSQDLSSQDGRGFAPGSSLDKSTESNGQGGGGIAAITGITVEKSVDFSYEELAKATDDFSLANKIGEGGFGSVYYAELRGEKAAIKKMDMQATKEFLAEIKVLTRVHHLNLVRLIGYCVENSLFLVYEYIENGNLSQHLRGTGHDPLPWPSRVQIALDSARGLEYIHEHTVPVYIHRDIKSANILIDKNFHGKVADFGLTKLTEVGNSSLPTRLVGTFGYMPPEYAQYGDVSPKIDVYAFGVVLYELISAKEAVVKTNRASAINESKGLVALFEDVLNQPDAKENLHKLVDPRLEENYPLDSVFKMAQLAKACTHENPQLRPSMRSIVVALMTLSSATEDWDVGSFYENQALVNLMSGR 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5951816 5956481 + Lag0014930.1 Lac12g0558 589155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0558 604 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524(InterPro)
Lac12g0558 604 ProSiteProfiles Protein kinase domain profile. 304 579 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g0558 604 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 9 603 IPR044812 GO:0019199(InterPro)|GO:0045087(InterPro)
Lac12g0558 604 Pfam Protein kinase domain 306 573 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g0558 604 MobiDBLite consensus disorder prediction 251 275 - -
Lac12g0558 604 FunFam LysM receptor kinase 2 283 374 - -
Lac12g0558 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac12g0558 604 SUPERFAMILY Protein kinase-like (PK-like) 288 576 IPR011009 -
Lac12g0558 604 Gene3D Phosphorylase Kinase; domain 1 290 374 - -
Lac12g0558 604 Gene3D Transferase(Phosphotransferase) domain 1 375 595 - -
Lac12g0558 604 FunFam PTI1-like tyrosine-protein kinase 3 375 590 - -
Lac12g0558 604 Pfam LysM domain 97 141 IPR018392 -
Lac12g0558 604 SMART serkin_6 304 578 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0558 Lac-Chr12:5951816 Lac3g0903 Lac-Chr3:7322582 1.70E-63 dispersed
Lac11g0775 Lac-Chr11:8160377 Lac12g0558 Lac-Chr12:5951816 1.50E-76 transposed
Lac13g0168 Lac-Chr13:1184429 Lac12g0558 Lac-Chr12:5951816 1.60E-77 transposed
Lac12g0558 Lac-Chr12:5951816 Lac7g1602 Lac-Chr7:18816416 1.50E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85790 PF00069 Pkinase 2.00E-46 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0558 K13429 - csv:101203576 988.408