Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0574 ATGGCCTGGACCCGACTCGCCGCCGTCGGCCAGGGCACCTCTGCCACCGTCTACCTCGCCGCCGACGTCCCCTCCGGTAACCTCTTCGCCGTCAAGTCCGCCGAGCTCCCCAAATCGGAGTTCTTGAAAACAGAGCAGAGGATTCTTTCTTCTCTGTCCCACCCTTCGATTGTGGGCTACAGGGGATTCGATGTAACGAGAGAAAGTGGCAAGTTGATGTATAATCTCTTCATGGACTACGCCCCCGGCGGCACTCTCGCCGACGAAATTCTCCGGCGCGGCGGTCGGATTAAGGAGGCGGCGGCGGGGTTCTACACGCGGGAAATTGCGAGGGGATTGGAGTATTTGCACAGAAGGGGTTTGGTGCATTGTGATGTTAAAACCAAGAATGTTTTAATCGGTGGAGATGGTTTGAAGATTGCGGATTTCGGATGCTCGAAATGGGTTTGTGAACCGGCGGCGATCGGCGGGACGCCGATGTTCATGGCGCCGGAGGTGGCGCGTGGGGAAAAACAGGGGATTTCCTCTGACATTTGGGCACTTGGGTGTACCTTAATCGAAATGGTCACCGGAGCTCCGCCGTGGCCGACCGTCGGCGACCCAGTTTCGGTTCTGTACCGGATCGGATATTCCGGCGATTCGCCGGAAATTCCAAGCTTTCTATCGGAACCAGGAAAGGATTTTCTGGGGAAATGCTTGAGAAGAGACCCAACAGAACGGTGGAGTGCGAGCCAACTTCTTGAGCATCCATTTTTGAAAGAATCGAGTTCTGGGTTCGAGGAAATTAAGGAATTACATTCAAATTCAAATTCTCCGACGAGTATCTTGGATCAAGGCCTTTGGAATTCGATGGAAGAAGAATCGCAATCTCTGATTTCATCAGAGAGTTGGGATGACGACAGAATCAGACGGCTGTCGATGTTTTCAGGGGAAATCAAGTGGGAATCGGAAGATGAGAATTGGATCACAATCAGAGGAAATGAAAGAGATGAAAGCAACAGAAGCTCTGTGGATGGTGAAGATGAGGGAGAATCCAATTTTGGGTCAACATCAGAAATCGATTCTAGAAGAAGTGATTTCGAGGAAAAGAAAAGAATAGGTAGTGGGAAAATCAAGTGTTTGGAATTGTTAGATAAAACAGTTAGCTTTAGACCAAGGAAAAGTGATATTGTAATTAGTGAACTTAGTACCAAGAGTGAGAGAGCTAACTTGTTAGTTCATCTAATCTCAAAGTTTTGA 1239 49.15 MAWTRLAAVGQGTSATVYLAADVPSGNLFAVKSAELPKSEFLKTEQRILSSLSHPSIVGYRGFDVTRESGKLMYNLFMDYAPGGTLADEILRRGGRIKEAAAGFYTREIARGLEYLHRRGLVHCDVKTKNVLIGGDGLKIADFGCSKWVCEPAAIGGTPMFMAPEVARGEKQGISSDIWALGCTLIEMVTGAPPWPTVGDPVSVLYRIGYSGDSPEIPSFLSEPGKDFLGKCLRRDPTERWSASQLLEHPFLKESSSGFEEIKELHSNSNSPTSILDQGLWNSMEEESQSLISSESWDDDRIRRLSMFSGEIKWESEDENWITIRGNERDESNRSSVDGEDEGESNFGSTSEIDSRRSDFEEKKRIGSGKIKCLELLDKTVSFRPRKSDIVISELSTKSERANLLVHLISKF 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6100365 6101603 + Lag0014946.1 Lac12g0574 589171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0574 412 MobiDBLite consensus disorder prediction 327 341 - -
Lac12g0574 412 CDD STKc_MAPKKK 3 252 - -
Lac12g0574 412 SMART serkin_6 3 252 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g0574 412 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 253 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lac12g0574 412 MobiDBLite consensus disorder prediction 327 359 - -
Lac12g0574 412 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Lac12g0574 412 ProSiteProfiles Protein kinase domain profile. 3 252 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g0574 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac12g0574 412 Pfam Protein kinase domain 5 252 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g0574 412 Gene3D Transferase(Phosphotransferase) domain 1 2 324 - -
Lac12g0574 412 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0574 Lac-Chr12:6100365 Lac2g1416 Lac-Chr2:11999441 1.80E-88 dispersed
Lac7g2850 Lac-Chr7:47648336 Lac12g0574 Lac-Chr12:6100365 1.80E-57 transposed
Lac1g3195 Lac-Chr1:52052585 Lac12g0574 Lac-Chr12:6100365 2.90E-95 wgd
Lac12g0574 Lac-Chr12:6100365 Lac9g2041 Lac-Chr9:40031485 1.90E-106 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85791 PF00069 Pkinase 8.00E-54 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0574 K20716 - csv:101205351 565.844