Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0601 ATGAGAAAGTTTGCTGCTCTGCTGCTGCTGCGTAGTTCGATATGGCTGTTCGTCACTGGTCCGATCTGGTGCCAGAAGCCTGCTGTCGTAAATATTGGTGCGGTTTTTACTTTCGATTCGGTTATCGGTAGAGCAGCAAAGCCCGCGATGCAAGCTGCAATCTCCGACATCAACGCCGACCCCAACATCTTGAATGGGATAAGGCTCAACTTCCTCATGGAGGACTCTAATTGCAGCGGCTTCTTGGGCTCCGTTGGAGTTTTGCAGGTACTTGAAAAAGAAATTGTGGCCATCATTGGACCACAATCCTCGGTGGTGGCTCATGTGATTTCCCAGATCGTTAATGGTCTACAAGTTCCTCAAGTTTCATACGGTGCCACCGACCCAACGCTGTCGACTCTCCAGCTTCCTTTTTTCGTCCGAACCACTTTAAGTGACTCGCACCAAATGGCCGCCATGGCTAACTTGATTGATTATTATGGCTGGAAAGAGGCCATCGCTATATATTTGGATGATGACTATGGGAGAAATGGGATATCTTCTTTGGCTGATGAACTTGAGAAGAAAATGTGTCGCATTTCTCATGAATTCCCCTTGCCTTCTCTTCTTAATCTTACTAAGATCACTGAGATACTCAATAGCTCTAAATTGCTTGGTCCTCGTGTTTATGTCGTTCACGTAGGCCCTGATCCCCAATTAAGAATCTTCACCATCGCCCATAAACTTGGCATGCTGAGCAGCAATTACGTTTGGTTCGCTACTGATTGGCTTGCTGCAACTCTAGATTCTTTCTCACCAATCAATCGTTCTGCACTTGATATACTTAATGGGGTAGTGGGGCTACGCCCTCATACTCCAGAGTCTAAAGGAAAGAGAAACTTGTGGGATCGGTTGAGCAGAATGCAGCCAACAGGTTTGAATGTTTATGGACTCTACGCTTATGATTCAGTATGGGTTGTGGCCAGGGCAGTCGATAGATTTCTCAAAGAAAATGGTAATATCACGTTTTCATCCTCAGGTAAAGCATTTGGCTCTAATGCAAGTGGAATTCAACTGGGAAGGCTCAAAGTGTTTGATGGCGGAAATGATCTGCTTAGTATTATAATGCAAACGAACTACACTGGTTTAAGTGGGCGAATTCAGTTTGGTGAAGATAGAAACATTATCAACGGTAGCTATGATGTGATTAACATTGACCAAAAGGGGATTCGTACAGTGGGTTATTGGTCTAATTCCACAGGATTCTCGGTTTCACCACCAGAAGATTTGACCTTGAAACAAGAGGATTACCCTTTAGATCAGAAACTTGGCAATGTAATTTGGCCTGGTGGAAGGTCGTCAGAACGACCGCGGGGTTGGGTGATTGCAGATGCTGGAAAACCCCTCAGAATCGCGTACCCGAAAAGAGCAAGCTTTGTTGATTTTGTTACTCAAGTGAACAACACCGATATGGTTCGAGGATACGTTATCGACATTTTCAAAGAAGCACTCAAGCTTATTCCATACGAGGTTCCTTACAGATTTGTGCCTTTTGGAGATGGCCGAGTCAATCCCAGTTATGATGAACTTGTTCAGTCGGTTGCAAACAATGTGTTTGATGCAGCTGTTGGGGACATTGCTATTGTCACCAACCGTACAAAGATTGTTGATTTTTCTCAACCATATACCACCACTGGGCTCATCATAGTTGCCCCGGTTAAAGATTCAAAATCAAGTGCTTGGGTGTTTCTCAGACCATTTACAGTGGAGATGTGGTGTGTAGTAGCAGCTTCCTTTGTGATCATCGGGATCGTTATTTGGATGCTCGAGCATCGAATCAACGACCATTTTCGAGGTCCTCCGAAGAGGCAGATTATCACAATGTGTCTGTTCAGCTTTTCAACTCTATTCAAGGCAAATCAAGAAGCAACACTCAGCCCACTTTCACGACTGGTGATGTTGGTGTGGCTGTTCTTATTGTTGGTAATAACGTCAAGCTACACAGCAAGCTTGACATCAATCCTTACAATTCAGCAACTTTGGTCGCCAATAAGTGGAATGGATGACTTGGTTGCGAGTAATTTGCCGATAGGATATCAGGTAGGATCCTTTGCTTACGACTATCTGATACAGAGCCTTTTCGTACCACGTTCCAGACTGGTCGAGCTCGACTCGCCTGAAGATTACGAGAAGGCACTTCGGCTCGGTCCTAAAGGAGTAGGAGGTGTGGCGGCCATCGTTGATGAACTTCCATATTTGGAGTTGTTTCTGTCTAAGACAAAGGAATTCGGAATCATTGGCCAACCTTTTACCAGAAGTGGATGGGGATTTGCTTTTCAGCGAGGATCTCGACTCGCAGTTGATATGTCAACTGCAATTTTGAGACTTTCTGAGGGCGGAAAGCTTCAAGAGATACACGACTTGTGGTTCTGTAAATTGGGTTGTCCCGGGCAGCGAGGAGGAAAACCATCACCAGACGAACTTCACTTGATCAGTTTCTGGGGTTTGTATTTACTTTGTGGAATCATTTCCTTGGCTGCACTTTTCGTGTTTCTTCTAAGACTAATTCGCCAGTATATCCGGTATCAACGACATCATCGTCGTTCGGAGGTAGTAACACCGTCCCCCATTTCAACCAACACCAGCTGTACTCAGACCATTCAAAGCTTTATACATTTTATTGACGAGAAGGAAGAAGCCATCAAAAGCTTCTTTCGAACGTCACATTCACATGGTGCTCAAAATGGGGACCAACACCAGAAACATTCACAAGCGGCAAAGGAGAAGACTGATTCAGAGGTACAGATGGGGAGCTCGGGTATGAATCGAGGATAG 2814 44.99 MRKFAALLLLRSSIWLFVTGPIWCQKPAVVNIGAVFTFDSVIGRAAKPAMQAAISDINADPNILNGIRLNFLMEDSNCSGFLGSVGVLQVLEKEIVAIIGPQSSVVAHVISQIVNGLQVPQVSYGATDPTLSTLQLPFFVRTTLSDSHQMAAMANLIDYYGWKEAIAIYLDDDYGRNGISSLADELEKKMCRISHEFPLPSLLNLTKITEILNSSKLLGPRVYVVHVGPDPQLRIFTIAHKLGMLSSNYVWFATDWLAATLDSFSPINRSALDILNGVVGLRPHTPESKGKRNLWDRLSRMQPTGLNVYGLYAYDSVWVVARAVDRFLKENGNITFSSSGKAFGSNASGIQLGRLKVFDGGNDLLSIIMQTNYTGLSGRIQFGEDRNIINGSYDVINIDQKGIRTVGYWSNSTGFSVSPPEDLTLKQEDYPLDQKLGNVIWPGGRSSERPRGWVIADAGKPLRIAYPKRASFVDFVTQVNNTDMVRGYVIDIFKEALKLIPYEVPYRFVPFGDGRVNPSYDELVQSVANNVFDAAVGDIAIVTNRTKIVDFSQPYTTTGLIIVAPVKDSKSSAWVFLRPFTVEMWCVVAASFVIIGIVIWMLEHRINDHFRGPPKRQIITMCLFSFSTLFKANQEATLSPLSRLVMLVWLFLLLVITSSYTASLTSILTIQQLWSPISGMDDLVASNLPIGYQVGSFAYDYLIQSLFVPRSRLVELDSPEDYEKALRLGPKGVGGVAAIVDELPYLELFLSKTKEFGIIGQPFTRSGWGFAFQRGSRLAVDMSTAILRLSEGGKLQEIHDLWFCKLGCPGQRGGKPSPDELHLISFWGLYLLCGIISLAALFVFLLRLIRQYIRYQRHHRRSEVVTPSPISTNTSCTQTIQSFIHFIDEKEEAIKSFFRTSHSHGAQNGDQHQKHSQAAKEKTDSEVQMGSSGMNRG 937
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6408862 6413521 - Lag0014973.1 Lac12g0601 589198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0601 937 Gene3D - 573 704 - -
Lac12g0601 937 FunFam Glutamate receptor 573 703 - -
Lac12g0601 937 MobiDBLite consensus disorder prediction 902 937 - -
Lac12g0601 937 Gene3D - 455 572 - -
Lac12g0601 937 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 30 903 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Lac12g0601 937 SMART GluR_14 463 805 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lac12g0601 937 FunFam Glutamate receptor 145 316 - -
Lac12g0601 937 SUPERFAMILY Periplasmic binding protein-like I 24 453 IPR028082 -
Lac12g0601 937 Pfam Ligand-gated ion channel 582 835 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lac12g0601 937 SUPERFAMILY Periplasmic binding protein-like II 450 803 - -
Lac12g0601 937 PIRSF IGluLR_plant 1 933 IPR017103 -
Lac12g0601 937 Pfam Ligated ion channel L-glutamate- and glycine-binding site 477 565 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
Lac12g0601 937 FunFam Glutamate receptor 457 573 - -
Lac12g0601 937 Pfam Receptor family ligand binding region 46 399 IPR001828 -
Lac12g0601 937 Gene3D - 145 415 - -
Lac12g0601 937 CDD PBP1_GABAb_receptor_plant 31 419 IPR044440 -
Lac12g0601 937 MobiDBLite consensus disorder prediction 923 937 - -
Lac12g0601 937 CDD GluR_Plant 460 803 - -
Lac12g0601 937 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 43 59 - -
Lac12g0601 937 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 103 131 - -
Lac12g0601 937 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 234 257 - -
Lac12g0601 937 FunFam Glutamate receptor 699 807 - -
Lac12g0601 937 Gene3D - 49 390 - -
Lac12g0601 937 Gene3D - 752 810 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0601 Lac-Chr12:6408862 Lac9g2059 Lac-Chr9:40186303 8.90E-261 dispersed
Lac12g2421 Lac-Chr12:41280177 Lac12g0601 Lac-Chr12:6408862 1.50E-122 transposed
Lac12g0601 Lac-Chr12:6408862 Lac9g2058 Lac-Chr9:40164506 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0601 K05387 - csv:101203158 1492.25