Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0611 ATGCCAGCCGGAATGATGATTCCAGCCAGAAACACGCCGCCGATGATCGGAAGGAATGGAAATGTCGGCGTCTTTGGCTCTCCGGCCAGCCTTGTTCTTGGTCAGGGAAATATGATGGAAGGGGGGCAGCTACATGCATTAGAAATGGCACAAAGCGCTTTGCCAGAAAGCGATTATGGACGAATGAGAGAAGCAGAAGAGTTTGAGAGTGCAACAAAATCAAGCAGCGAGAACCACGAGGTTGCTTCTGGTGACGACCAAGACCTTCAACGCCCCAAAAAGAAGCGTTACCACCGCCACACTCAGCACCAGATCCAACAAATGGAAGCGTTCTTCAAGGAATGTCCTCACCCAGATGACAAGCAAAGGAAGGAGCTGAGCAGGGAGTTGGGATTAGAGCCATTGCAAGTCAAATTTTGGTTCCAAAACAAGCGAACTCAGATGAAGACTCATCACGAGCGACATGAAAACACCCAGCTGAGAACAGAAAATGAGAAGCTTCGAGCCGATAATATGAGGTACAGAGAAGCTCTCAGTAATGCCACGTGTCCCAATTGTGGAGGTCCGACCGCCATTGGAGAGATGTCCTTTGATGAACATCATCTCAGGCTTGAAAATGCCCGCTTGAGAGAAGAGATCGATCGCATTTCAGCCATAGCAGCAAAATACGTAGGAAAGCCAGTTTCAAACTACCCTCTTCTTTCCCCGCCAATTCCTTCACGTCCTCTAGACCTCGGAATGGGCAGCTATGGAGGCCACGAGCCAGGCCTCGGGTCAGGCGGGGACATGTACGGGGCAGCGGACCTTTTAAGGACGATAAGCGCACCATCGGAGGCCGACAAGCCCGTAATCATCGAGCTTGCGGTTGCAGCCATGGAGGAACTAGTCCGAATGGCTCAGATGGGCGAGCCCTTGTGGATGACAGCCCTTGATGGCTCAACGGCTGTGCTCAATGAAGATGAATATGTTAGAAGCTTTCCTAGAGGAATTGGACCTAAGCCCTCTGGGTTTAGCTGTGAAGCTTCTCGTGCTACTGCTGTTGTTATTATGAACCATATTAGCCTCGTTGAGATGCTGATGGATGTGAATCAGTGGTCAACCATATTCACTGGGATTGTCTCAAGAGCTATGACATTAGAAGTTTTGTCAACGGGCGTTGCTGGAAACTACAACGGAGCATTACAAGTGATGACATCCGAATTGCAAGTGCCTTCGCCCCTCGTTCCGACAAGGGAGAGCTATTTCGTAAGGTACTGTAAACAACATGGAGAGGGAACTTGGGCTGTGGTCGACGTGTCGTTGGACAATTTACGCCCTGCTCCTGCACTTAGATGCAGAAGAAGGCCTTCCGGCTGTTTAATCCAAGAAATGCCTAATGGCTATTCTAAGGTTACGTGGGTTGAGAATGTTGAGGTGGATGATCGGGGGGTCCACAGTTTGTACAATCAGCTTGTTAGCTCTGGCCAAGCGTTCGGCGCAAAGCGTTGGATTGCCACGTTGGATCGTCAGTGTGAACGGCTCGCCAGCGCCATGGCCACAAGTATTCCGACCGGCGATGCTGGTGTGATAACGAATCAAGAAGGAAGAAAGAGCATGTTGAAGCTGGCAGAGAGAATGGTGATGAGCTTTTGCGGCGGCGTGTGCGCGTCGACCACGCACACGTGGACAACACTATCGGGAACGGGAGCTGATGACGTCAGAGTTATGACACGTAAGAGCGTTGACGACCCTGGCAGACCACCTGGCATTGTCCTCAGCGCCGCCACTTCCTTCTGGCTTCCTGTTCCTCCTAACAGAGTCTTCCATTTCCTCAGAGATGAAAATTCTCGTAATGAGTGGGATATTCTTTCCAATGGTGGAGTTGTTCAAGAAATGGCTCACATTGCCAATGGCCGCGACACTGGCAACTCTGTCTCATTGCTACGAGTAAACAGTGCAAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGCAGCACAGATCAAACAGCCTCGTTTGTGATCTACGCGCCGGTGGACATTGTGGCCATCAACGTGGTTCTTAACGGCGGCGATCCCGATTATGTCGCCCTTCTCCCCTCTGGGTTCGCCATTCTTCCCGACGGAACCGCCGCACCCGGCGGCGGCGGCGCTAATGGCGTCGGCGAACATGGCTCCGGCGGGTCGCTTTTAACGGTTGCATTTCAGATTTTGGTTGACTCGGTTCCCACAGCAAAGCTTTCTCTTGGGTCAGTTGCAACGGTCAACAATCTCATTGCCTGTACTGTCGAGAGGATCAAAGCCTCCTTGTCGTGTGAGAATCCATGA 2310 51.21 MPAGMMIPARNTPPMIGRNGNVGVFGSPASLVLGQGNMMEGGQLHALEMAQSALPESDYGRMREAEEFESATKSSSENHEVASGDDQDLQRPKKKRYHRHTQHQIQQMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTHHERHENTQLRTENEKLRADNMRYREALSNATCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVSNYPLLSPPIPSRPLDLGMGSYGGHEPGLGSGGDMYGAADLLRTISAPSEADKPVIIELAVAAMEELVRMAQMGEPLWMTALDGSTAVLNEDEYVRSFPRGIGPKPSGFSCEASRATAVVIMNHISLVEMLMDVNQWSTIFTGIVSRAMTLEVLSTGVAGNYNGALQVMTSELQVPSPLVPTRESYFVRYCKQHGEGTWAVVDVSLDNLRPAPALRCRRRPSGCLIQEMPNGYSKVTWVENVEVDDRGVHSLYNQLVSSGQAFGAKRWIATLDRQCERLASAMATSIPTGDAGVITNQEGRKSMLKLAERMVMSFCGGVCASTTHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPNRVFHFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNSVSLLRVNSANSSQSNMLILQESSTDQTASFVIYAPVDIVAINVVLNGGDPDYVALLPSGFAILPDGTAAPGGGGANGVGEHGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCENP 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6484005 6489425 + Lag0014983.1 Lac12g0611 589208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0611 769 ProSiteProfiles 'Homeobox' domain profile. 91 151 IPR001356 GO:0003677(InterPro)
Lac12g0611 769 SMART START_1 286 506 IPR002913 GO:0008289(InterPro)
Lac12g0611 769 FunFam Homeobox-leucine zipper protein GLABRA 2 286 505 - -
Lac12g0611 769 SUPERFAMILY Bet v1-like 279 508 - -
Lac12g0611 769 ProSitePatterns 'Homeobox' domain signature. 126 149 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lac12g0611 769 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 77 767 IPR042160 -
Lac12g0611 769 MobiDBLite consensus disorder prediction 63 92 - -
Lac12g0611 769 MobiDBLite consensus disorder prediction 63 102 - -
Lac12g0611 769 SUPERFAMILY Homeodomain-like 81 150 IPR009057 -
Lac12g0611 769 Pfam START domain 287 506 IPR002913 GO:0008289(InterPro)
Lac12g0611 769 CDD START_ArGLABRA2_like 281 505 - -
Lac12g0611 769 ProSiteProfiles START domain profile. 277 509 IPR002913 GO:0008289(InterPro)
Lac12g0611 769 FunFam Homeobox-leucine zipper protein HDG1 80 167 - -
Lac12g0611 769 Pfam Homeodomain 94 149 IPR001356 GO:0003677(InterPro)
Lac12g0611 769 Gene3D - 79 168 - -
Lac12g0611 769 Gene3D - 320 504 IPR023393 -
Lac12g0611 769 SMART HOX_1 92 155 IPR001356 GO:0003677(InterPro)
Lac12g0611 769 Coils Coil 157 177 - -
Lac12g0611 769 SUPERFAMILY Bet v1-like 525 761 - -
Lac12g0611 769 CDD homeodomain 94 152 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0611 Lac-Chr12:6484005 Lac12g1799 Lac-Chr12:34276663 9.60E-221 dispersed
Lac10g0023 Lac-Chr10:302858 Lac12g0611 Lac-Chr12:6484005 6.20E-190 transposed
Lac11g0297 Lac-Chr11:2949290 Lac12g0611 Lac-Chr12:6484005 1.30E-164 transposed
Lac11g2444 Lac-Chr11:40603603 Lac12g0611 Lac-Chr12:6484005 2.90E-175 transposed
Lac1g3228 Lac-Chr1:52245567 Lac12g0611 Lac-Chr12:6484005 9.90E-284 wgd
Lac10g0711 Lac-Chr10:5486944 Lac12g0611 Lac-Chr12:6484005 2.00E-284 wgd
Lac12g0611 Lac-Chr12:6484005 Lac9g2062 Lac-Chr9:40201422 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23030 PF01852 START 1.10E-57 CL0209 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0611 K09338 - csv:101219415 1365.13