Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0614 ATGAGGATCAACCCATTTGCTGATGCAAATGCTGAGGACTCAGGAGCCGGGGCAAAAGAGTATGTTCATGTGCGCATACAGCAACGTAACGGGAGAAAAAGTCTGACAACTGTCCAAGGATTGAAAAAAGAATTTAGTTATAACAAGATACTTAAGGACCTGAAGAAGGAATTCTGCTGTAATGGCACAGTTGTGCAAGATCCTGAGCTAGGCCAGGTTATACAACTTCAGGGAGACCAAAGAAAGAATGTGTCTACCTTCCTTGTGCAGGCTGGCATTGTGAAGAAGGAAAATATCAAGATTCACGGTTTCTAA 315 42.86 MRINPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 104
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6537469 6538916 - Lag0014986.1 Lac12g0614 589211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0614 104 ProSiteProfiles Translation initiation factor SUI1 family profile. 22 92 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Lac12g0614 104 NCBIfam translation initiation factor SUI1 3 104 IPR005874 GO:0003743(InterPro)
Lac12g0614 104 SUPERFAMILY eIF1-like 10 104 IPR036877 GO:0003743(InterPro)|GO:0006413(InterPro)
Lac12g0614 104 PIRSF Transl_init_SUI1_Euk 1 104 IPR005874 GO:0003743(InterPro)
Lac12g0614 104 Gene3D - 1 104 - -
Lac12g0614 104 FunFam Eukaryotic translation initiation factor SUI1 1 104 - -
Lac12g0614 104 Pfam Translation initiation factor SUI1 19 93 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Lac12g0614 104 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 4 104 - GO:0003723(PANTHER)
Lac12g0614 104 CDD eIF1_SUI1 20 103 IPR005874 GO:0003743(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0614 Lac-Chr12:6537469 Lac5g1340 Lac-Chr5:26557174 7.80E-41 dispersed
Lac12g0614 Lac-Chr12:6537469 Lac12g0615 Lac-Chr12:6542266 1.50E-52 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0614 K03113 - csv:101219651 203.371