Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0615 ATGTCTGAATTCAACGTGCAGATTCCATCTGCTTTTGACCCATTTGCTGATGCAAATGCTGAGGACTCAGGAGCCGGGGCAAAAGAGTATGTTCATGTGCGCATACAGCAACGTAACGGGAGAAAAAGCCTGACAACTGTCCAAGGATTGAAGAAGGAATTTAGTTATAACAAGATACTCAAGGATCTGAAGAAGGAATTCTGCTGTAATGGCACTGTTGTGCAAGATCCTGAGCTAGGCCAGGTTATACAACTTCAGGGAGACCAAAGAAAGAATGTGTCTACCTTCCTTGTGCAGGCGGGCATTGTGAAGAAGGAGAACATCAAGATTCACGGTTTCTGA 342 44.74 MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6542266 6543193 - Lag0014987.1 Lac12g0615 589212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0615 113 NCBIfam translation initiation factor SUI1 6 113 IPR005874 GO:0003743(InterPro)
Lac12g0615 113 SUPERFAMILY eIF1-like 4 113 IPR036877 GO:0003743(InterPro)|GO:0006413(InterPro)
Lac12g0615 113 CDD eIF1_SUI1 29 112 IPR005874 GO:0003743(InterPro)
Lac12g0615 113 FunFam Eukaryotic translation initiation factor SUI1 2 113 - -
Lac12g0615 113 PIRSF Transl_init_SUI1_Euk 1 113 IPR005874 GO:0003743(InterPro)
Lac12g0615 113 ProSiteProfiles Translation initiation factor SUI1 family profile. 31 101 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Lac12g0615 113 Pfam Translation initiation factor SUI1 28 102 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Lac12g0615 113 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 113 - GO:0003723(PANTHER)
Lac12g0615 113 Gene3D - 1 113 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0615 Lac-Chr12:6542266 Lac5g1340 Lac-Chr5:26557174 8.70E-46 dispersed
Lac12g0614 Lac-Chr12:6537469 Lac12g0615 Lac-Chr12:6542266 1.50E-52 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0615 K03113 - csv:101219651 228.409