Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0621 ATGCTTGTGTCGTCTCTCTCGAACATCGTCGAAGCGCAGGACTTGACAGTCGGGTTTTATCATGCTAGCTGCCCAGGGGTGGAGTATATCGTCGCCAAAACAGTGGCTCAATATATCAAGAAACAACCGACTCTAGCAGCGACTTTATTGAGAATGCATTTTCATGACTGCTTCGTTAGGGGTTGTGATGGTTCTATCTTGCTAAATTCCATGCCAAAAAACCAAGCCGAAAAAGATTCTGTTCCCAACCTTGGTTTAAGAGGTTACAATGTCGTTGACGCTGTTAAAGTTGCTGTCGAGAAGCAGTGTCCCGGTGTCGTTTCATGTGCTGATGTCCTCGCTTTGATAGCTCGTGACGCCGTTAGAATGATTGGAGGCCCACTGTGGGAAGTTCCAACAGGAAGAAGAGACGGAAGAGTATCAATCTCCAGAGAAGCTTTGATCAATTTGCCGCCACCATTCGCCAACATCTCATCTCTCAAAACCAGTTTTCTCTCCAAAGGTCTCTCCGTCAAAGATCTAGTCGTTCTATCCGGAGCTCACACGATCGGAGTCTCTCACTGCACCTCCTTCTCCAACCGCCTCTACAACTTCACCGGCAGAGGCGACGCCGATCCGAAACTAGACAGACTCTACGCAGTCGCACTCAAGAAGAAATGCAAGCCAAACGACCAGAAAACGATCGTCGAGATGGATCCAGGAAGCTTCAAGACCTTCGATGAAGATTACTACACTCTCGTCTCCAAGAGAAGAGGTTTGTTCCAGTCCGATTCGGCTCTTCTCGACGATCCTGACACCAAAGACTACGTTCTGCTTCAGGCTACAACACACGGCTTTACTTTCGCCGCCGATTTCGCTGAATCGATGGTGAATATGGGACAGATCGGCGTCCTCACCGGCACCGACGGCGAAATTAGGCGCCGATGTGGTTTTGTTAACTGA 942 49.04 MLVSSLSNIVEAQDLTVGFYHASCPGVEYIVAKTVAQYIKKQPTLAATLLRMHFHDCFVRGCDGSILLNSMPKNQAEKDSVPNLGLRGYNVVDAVKVAVEKQCPGVVSCADVLALIARDAVRMIGGPLWEVPTGRRDGRVSISREALINLPPPFANISSLKTSFLSKGLSVKDLVVLSGAHTIGVSHCTSFSNRLYNFTGRGDADPKLDRLYAVALKKKCKPNDQKTIVEMDPGSFKTFDEDYYTLVSKRRGLFQSDSALLDDPDTKDYVLLQATTHGFTFAADFAESMVNMGQIGVLTGTDGEIRRRCGFVN 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6575020 6576953 + Lag0014993.1 Lac12g0621 589218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0621 313 Gene3D Peroxidase, domain 2 151 292 - -
Lac12g0621 313 FunFam Peroxidase 18 161 - -
Lac12g0621 313 ProSitePatterns Peroxidases active site signature. 46 57 IPR019794 GO:0004601(InterPro)
Lac12g0621 313 PANTHER PEROXIDASE 25-RELATED 16 309 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Lac12g0621 313 PRINTS Plant peroxidase signature 87 100 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0621 313 PRINTS Plant peroxidase signature 246 263 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0621 313 PRINTS Plant peroxidase signature 172 184 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0621 313 PRINTS Plant peroxidase signature 48 68 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0621 313 PRINTS Plant peroxidase signature 230 245 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0621 313 PRINTS Plant peroxidase signature 287 300 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0621 313 PRINTS Plant peroxidase signature 106 116 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0621 313 PRINTS Plant peroxidase signature 24 43 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0621 313 PRINTS Plant peroxidase signature 125 140 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0621 313 ProSiteProfiles Plant heme peroxidase family profile. 14 313 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0621 313 PRINTS Haem peroxidase superfamily signature 46 60 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0621 313 PRINTS Haem peroxidase superfamily signature 125 137 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0621 313 PRINTS Haem peroxidase superfamily signature 232 247 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0621 313 PRINTS Haem peroxidase superfamily signature 173 188 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0621 313 PRINTS Haem peroxidase superfamily signature 107 124 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0621 313 Gene3D - 18 313 - -
Lac12g0621 313 FunFam Peroxidase 151 292 - -
Lac12g0621 313 SUPERFAMILY Heme-dependent peroxidases 14 313 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0621 313 Pfam Peroxidase 31 272 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0621 313 CDD secretory_peroxidase 15 312 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lac12g0621 313 ProSitePatterns Peroxidases proximal heme-ligand signature. 173 183 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0621 Lac-Chr12:6575020 Lac1g3035 Lac-Chr1:51014104 4.70E-73 dispersed
Lac12g0621 Lac-Chr12:6575020 Lac12g0622 Lac-Chr12:6586955 9.40E-98 tandem
Lac12g0256 Lac-Chr12:2813335 Lac12g0621 Lac-Chr12:6575020 5.10E-70 transposed
Lac12g0275 Lac-Chr12:3036809 Lac12g0621 Lac-Chr12:6575020 1.80E-59 transposed
Lac12g2368 Lac-Chr12:40798105 Lac12g0621 Lac-Chr12:6575020 5.00E-86 transposed
Lac12g0621 Lac-Chr12:6575020 Lac9g2070 Lac-Chr9:40326885 3.70E-86 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0621 K00430 - csv:101219177 541.962