Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0622 ATGGAGCTCTCTCGTTGTTGTCGTCTTGTCTTTCTAATTGTATGTCTTCTAGGACTTGCTAGCTCAAGCCAAGCTCAGCTCGAGCTTGGCTTCTATGCAAAGAGCTGCCCTCGTGCCGAGAAAATCATCCACGACTATGTCTACGACAAGATTCCCAAAGTTCCAACGTTGGCCGCTGCCTTCATTAGAATGCATTTCCATGATTGCTTCGTTCGGGGTTGTGACGCGTCTCTGCTTCTGAACTCGACTGCCGGCAACCCAAGCGAGAAGGCATCGCCGCCGAATCTAACACTGAGAGGCTTCGACTTCCTCGATAAAATCAAGAAACTTTTGGAAGCTGAGTGCCCTGGAATCGTCTCTTGCGCCGACATTCTTTCGCTGGTTGCAAGAGACTCCGTCGTTGCCATTGGCGGTCCATTCTGGAGAGTTCCAACCGGAAGAAGAGACGGTCTGATCTCAAGATCCAACGAAGCTTTGGCCAACATTCCTCCACCCTTCGGCAACTTTTCAACTCTCCAACGACTTTTCGCCAACCAAGGCCTTGATCTCAAAGACTTGGTTTTGCTATCCGGAGCTCACACGATCGGAATCTCCCACTGCTCGTCGTTCAGAAATCGTCTATACAACTTCACCGGAAAGGGAGACCAAGACCCATCACTCGACAGCGAGTACGCCGCAAATCTAAAGGCAAGGAAATGCAAAAGCATAAGCGCCAATGGGATCGTGGAAATGGACCCTGGCAGTTTCAGGACCTTCGATCTCAGCTACTACTCTCTTCTCCTCAAGCGACGAGGCCTCTTCCAGTCCGACGCCGCTCTGACCACCAGCCCAGTCACCAAGGCCTTCGTCACTGACCTGCTCAATGGCTCGCTCAAGAATTTCTTTGCCGAGTTCGGCTTGGCCATGGAGAAGATGGGTCGGATCGGAGTCAAGACTGGTGCTGAGGGCGAGATTCGCAAGCATTGTGCCGTTGTCAATGGCTCATGA 987 51.87 MELSRCCRLVFLIVCLLGLASSSQAQLELGFYAKSCPRAEKIIHDYVYDKIPKVPTLAAAFIRMHFHDCFVRGCDASLLLNSTAGNPSEKASPPNLTLRGFDFLDKIKKLLEAECPGIVSCADILSLVARDSVVAIGGPFWRVPTGRRDGLISRSNEALANIPPPFGNFSTLQRLFANQGLDLKDLVLLSGAHTIGISHCSSFRNRLYNFTGKGDQDPSLDSEYAANLKARKCKSISANGIVEMDPGSFRTFDLSYYSLLLKRRGLFQSDAALTTSPVTKAFVTDLLNGSLKNFFAEFGLAMEKMGRIGVKTGAEGEIRKHCAVVNGS 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6586955 6589848 + Lag0014994.1 Lac12g0622 589219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0622 328 PANTHER PEROXIDASE 25-RELATED 17 322 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Lac12g0622 328 ProSiteProfiles Plant heme peroxidase family profile. 26 326 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0622 328 Gene3D - 30 326 - -
Lac12g0622 328 FunFam Peroxidase 163 305 - -
Lac12g0622 328 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601(InterPro)
Lac12g0622 328 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0622 328 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0622 328 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0622 328 PRINTS Plant peroxidase signature 243 258 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0622 328 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0622 328 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0622 328 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0622 328 PRINTS Plant peroxidase signature 300 313 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0622 328 PRINTS Plant peroxidase signature 259 276 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0622 328 SUPERFAMILY Heme-dependent peroxidases 26 326 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0622 328 Gene3D Peroxidase, domain 2 163 305 - -
Lac12g0622 328 Pfam Peroxidase 49 286 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0622 328 FunFam Peroxidase 30 170 - -
Lac12g0622 328 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0622 328 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0622 328 PRINTS Haem peroxidase superfamily signature 245 260 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0622 328 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0622 328 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g0622 328 ProSitePatterns Peroxidases proximal heme-ligand signature. 185 195 IPR019793 -
Lac12g0622 328 CDD secretory_peroxidase 26 325 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0622 Lac-Chr12:6586955 Lac9g2070 Lac-Chr9:40326885 6.10E-124 dispersed
Lac12g0621 Lac-Chr12:6575020 Lac12g0622 Lac-Chr12:6586955 9.40E-98 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0622 K00430 - csv:101213629 471.085