Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0656 ATGGTGGCCAAGAGAAGAGGTGTCAGGAACTTGGTCACTATCAGCTGGTCTGCGGAGGAGTTTATGTCTTTTTTCCTTTTGTACTCATTTGTGCTTTTTATTTCTGTCGGTAATTGCTTTGCTAAAGATCTCTTAGAATTGAAGAGTTGCATAAGTGATGAGAAAGGGGATACTCTTGTATCCGCAGGATCGAGATTCGAACTTGGATTTTTTACGCCATATGGCAGCTTTGATAGCAGAAGATATGTGGGAATATGGTATTACAAATCAAATCCAAGTACAGTTGTTTGGGTTGCCAATAGAGACAGGCCACTTGCTGGTTCGGATGGTGTCTTTAAGATTGGGGATGATGGCAACCTCAAAGTATATGATGGAAATCGGAATCTTTATTGGTCAACAAACATTGGAAGTTCTGTACTCGATCACAGGACCCTGAAGCTAATGGATAATGGAAATCTGGTTTTGAGCTGTGAAGATCAAGAAGACTTGTCTGAGCAAATCCTCTGGCAGAGTTTTGATTACCCAACTGACACATTTCTTCCTGGCATGGTAATGAACGACAACTTAGTGCTGACTTCATGGAAGAGCTATAACGAGCCAGCTCAAGGAAACTTCACTTTTCAGCTAGATCAAGATGGAGGCCAATATGTCATTTGGAAGAGATCAGTTAAATACTGGAAAAGTGGAGTTTCAGGTAAGTTTATTACCACTGATAAGATGCCTGCAGCATTGTTATACCTTCTGTCAAATTTCTCATCGAAAACTGTCCCAAACTTCTCCGTGCCACATCTCACATCATCATTGTATATTGATACAAGGCTGGTATTGAACAGCTCAGCAGGTCAGCTTCAATATTTAAACTGGGAGGATCACAAAGTCTGGTCTCAGATTTGGGAGGAGCCAAGAGATAGGTGCAATGTGTATAATGCGTGCGGAGATTTTGCTAGCTGTAATAGTAAGGGTGGTATGGCTTGCAAATGCCTGCCTGGTTTTGAGCCTACCTCTCCGGGGAGTTGGAATATTGGAGATTATTCGGGTGGATGCATCAGAAAGTCGCCAATATGCACCGTCGACAATGAGAGTGACACATTTTTGAGTCTAAAGATGATGAAAGCTGGAAACCCGGACTTCCAATTTAATGCTAAAGATGACTTGGATTGCAAATTGGAGTGCCTCAACAACTGCCAATGTCAGGCTTACTCATATGTGGAAGCTAATATCACAAGGCAGGGTGGGATTGATAACTCTGCCTGTTGGATTTGGTCTGGAGATCTCAACAATCTTCAGGACGAGTTTGATAATGGTCGTGACCTCAACGTTCGAGTAGCAGTTCGAGATCTAGAATCGACGGTCAGAAATTGTGGAACATGTGGCACAAACCTCATTCCTTATCCGCTTAGCACAGGACCTGAATGTGGTGATCCCATGTACTTCAATTTTAATTGCAATGTGGCCACTGGCCAGGTAAACTTTGAAGCAGCAGGTGGAACGTACAAGGTTAAATTCATCGATTCAGAAGCTCGGAAATTTATCATTCAAACCAAGGAAGCCGGTGATTGCGGTGATAGAAATTGGATAAATAAAACCATTCAGCTGAACCAGTCATCTCCTTTCCATGTAACCAGCTGGTGCAACTTTAAGGAGACTAATCCAGAGAATTTTTCTCCAGGAACCAGCAATGAAGTTGAAATTGGTTGGGAGTCACCATTAGAGCCAACTTGTTCTTCAACTATGGACTGCAAAGACTGGCCTTATTCATCCTGCAACATGAGTAAAGATGGAATCAGAAGATGCCTTTGCATAACAAACTTCCATTGGAATGGCTGGAGTTTGAATTGCACTACAGATCACAACAAAGAAAAGGATGGGAGAGGCAAGACGACCTTCTCTGTGATTATTGTTGCAACAACCATATCTATAGTCTTTCTGATGATTCTCTCATGTACTGTATTTTATATATACTTCTCCAAAACTGGGCTCATCGACAGACAAGAAAGTAGGGGAAACAGCCAAAAAGACTTAATGCTTCACTTGTACGACAACGAGAGACGTGCCAAAGACCTGATCGAATCAGGCCGATTCAAGGAAGATGACACGAATGGAATAGACATTCCGTTTTTTGATTTGGAAACAATTCTAAATGCCACAGGGAACTTCTCTAATGCAAATAAGCTCGGACAGGGAGGTTTTGGGCCAGTTTACAAGGGCAAGTTCCCAAGTGGGCAGGAGATTGCTGTAAAGAGGCTCTCAAGTGGTTCAGGACAAGGCTTTGAGGAGTTTAAGAATGAGGTTTTGTTAATTGCGAAACTTCAACATCGAAATCTTGTAAGACTTTTGGGCTATTGTGTTGAAGGTGATGAAAAGATGTTGCTTTATGAATATATGCCAAACAAAAGCTTGGACGCCTTTATATTCGATCAAAAGCTAAGTGTGGCATTGGATTGGGACATGCGCTTCAATATCATCTTAGGAATTGCTCGTGGCCTTCTTTACCTACACCAAGATTCGAGGTTGAGAATCATTCATAGAGATTTGAAGACAAGCAACATTCTTCTAGATGAGGAGATGAATCCCAAAATATCAGACTTCGGCTTGGCTAGGATCTTTGGAGGGAAAGAAACTGCCACAAATACCAAAAGGGTGGTGGGGACTTATGGATACATGTCACCAGAATACGCATTGGATGGCATATTTTCTGTCAAATCTGATGTCTTTAGCTTCGGTGTAGTCGTAATCGAGATCATTAGTGGAAAAAGGAATACAGGATTCTATCACTCGGAGAAAGCTTTGAGTCTTCTAGGCTACGCTTGGGATTTATGGATGAAAGACGGAGGCTTGGATTTGATGGAGCAAACACTGGGTGAGAATTGCAAGAGAGATGAATATTTGAAGTGTTTAAATGTGGGGCTGTTGTGTGTCCAGGAAGATCCGTGGGATCGACCAACCATGTCGAATGTGGTCTTCATGCTTGGTAGTGAAACTGCAACTCTTCCATCTCCGAAACCACCAGCGTTCGTTGTGCGGCGGTGCCCTTCGAGCCGAGCTTCTTCCTCCACTAAACCAGAAACCTTCTCCCATAATGAGTTGACAGTCACCTTAAAGGAAGGTAGATAG 3114 42.55 MVAKRRGVRNLVTISWSAEEFMSFFLLYSFVLFISVGNCFAKDLLELKSCISDEKGDTLVSAGSRFELGFFTPYGSFDSRRYVGIWYYKSNPSTVVWVANRDRPLAGSDGVFKIGDDGNLKVYDGNRNLYWSTNIGSSVLDHRTLKLMDNGNLVLSCEDQEDLSEQILWQSFDYPTDTFLPGMVMNDNLVLTSWKSYNEPAQGNFTFQLDQDGGQYVIWKRSVKYWKSGVSGKFITTDKMPAALLYLLSNFSSKTVPNFSVPHLTSSLYIDTRLVLNSSAGQLQYLNWEDHKVWSQIWEEPRDRCNVYNACGDFASCNSKGGMACKCLPGFEPTSPGSWNIGDYSGGCIRKSPICTVDNESDTFLSLKMMKAGNPDFQFNAKDDLDCKLECLNNCQCQAYSYVEANITRQGGIDNSACWIWSGDLNNLQDEFDNGRDLNVRVAVRDLESTVRNCGTCGTNLIPYPLSTGPECGDPMYFNFNCNVATGQVNFEAAGGTYKVKFIDSEARKFIIQTKEAGDCGDRNWINKTIQLNQSSPFHVTSWCNFKETNPENFSPGTSNEVEIGWESPLEPTCSSTMDCKDWPYSSCNMSKDGIRRCLCITNFHWNGWSLNCTTDHNKEKDGRGKTTFSVIIVATTISIVFLMILSCTVFYIYFSKTGLIDRQESRGNSQKDLMLHLYDNERRAKDLIESGRFKEDDTNGIDIPFFDLETILNATGNFSNANKLGQGGFGPVYKGKFPSGQEIAVKRLSSGSGQGFEEFKNEVLLIAKLQHRNLVRLLGYCVEGDEKMLLYEYMPNKSLDAFIFDQKLSVALDWDMRFNIILGIARGLLYLHQDSRLRIIHRDLKTSNILLDEEMNPKISDFGLARIFGGKETATNTKRVVGTYGYMSPEYALDGIFSVKSDVFSFGVVVIEIISGKRNTGFYHSEKALSLLGYAWDLWMKDGGLDLMEQTLGENCKRDEYLKCLNVGLLCVQEDPWDRPTMSNVVFMLGSETATLPSPKPPAFVVRRCPSSRASSSTKPETFSHNELTVTLKEGR 1037
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6838027 6841790 - Lag0015028.1 Lac12g0656 589253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0656 1037 Pfam Protein tyrosine and serine/threonine kinase 722 987 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac12g0656 1037 Pfam D-mannose binding lectin 94 193 IPR001480 -
Lac12g0656 1037 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 684 794 - -
Lac12g0656 1037 Gene3D Phosphorylase Kinase; domain 1 682 794 - -
Lac12g0656 1037 Pfam Domain of unknown function (DUF3403) 992 1037 IPR021820 GO:0004674(InterPro)
Lac12g0656 1037 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 38 172 - -
Lac12g0656 1037 ProSitePatterns Serine/Threonine protein kinases active-site signature. 840 852 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac12g0656 1037 SMART ntp_6 359 442 IPR003609 -
Lac12g0656 1037 SUPERFAMILY alpha-D-mannose-specific plant lectins 95 198 IPR036426 -
Lac12g0656 1037 SMART serkin_6 719 963 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g0656 1037 CDD STKc_IRAK 725 990 - -
Lac12g0656 1037 ProSiteProfiles Protein kinase domain profile. 719 997 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g0656 1037 Pfam S-locus glycoprotein domain 226 334 IPR000858 GO:0048544(InterPro)
Lac12g0656 1037 Gene3D Transferase(Phosphotransferase) domain 1 795 997 - -
Lac12g0656 1037 Gene3D - 44 172 IPR036426 -
Lac12g0656 1037 MobiDBLite consensus disorder prediction 1013 1030 - -
Lac12g0656 1037 Pfam PAN-like domain 355 427 IPR003609 -
Lac12g0656 1037 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 795 998 - -
Lac12g0656 1037 ProSiteProfiles PAN/Apple domain profile. 355 443 IPR003609 -
Lac12g0656 1037 SUPERFAMILY Protein kinase-like (PK-like) 704 1020 IPR011009 -
Lac12g0656 1037 MobiDBLite consensus disorder prediction 1013 1037 - -
Lac12g0656 1037 SMART blect_4 52 175 IPR001480 -
Lac12g0656 1037 ProSiteProfiles Bulb-type lectin domain profile. 44 168 IPR001480 -
Lac12g0656 1037 CDD PAN_AP_plant 355 443 - -
Lac12g0656 1037 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 48 1004 - -
Lac12g0656 1037 CDD B_lectin 56 175 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0241 Lac-Chr10:1882042 Lac12g0656 Lac-Chr12:6838027 2.60E-97 dispersed
Lac12g0656 Lac-Chr12:6838027 Lac9g2106 Lac-Chr9:40719050 7.10E-259 dispersed
Lac12g0656 Lac-Chr12:6838027 Lac12g0661 Lac-Chr12:6875543 2.20E-101 proximal
Lac1g3267 Lac-Chr1:52510724 Lac12g0656 Lac-Chr12:6838027 3.50E-118 wgd
Lac10g0773 Lac-Chr10:6093429 Lac12g0656 Lac-Chr12:6838027 5.10E-119 wgd
Lac12g0656 Lac-Chr12:6838027 Lac12g1867 Lac-Chr12:35173864 3.70E-32 wgd
Lac12g0656 Lac-Chr12:6838027 Lac9g2105 Lac-Chr9:40710714 3.10E-222 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85792 PF07714 PK_Tyr_Ser-Thr 3.00E-45 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0656 - - - 0.0