Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0676 ATGACATTTTTCTCCTTCTTCTCTAGAGCTTCAAGATCTTTTCATGGCTCCCCTGCATACTCAAAGCTTCTAGTCATCAGCACCCTCAGTAGCGGAGGTCTATTGGCATATGCTGATTCACAATCAGATGCCGGCAGTCCTATTGAGGAGTGCCCAAAACAGAGAGTTGTAGTGCTTGGAACAGGATGGGCCGGTACCAGTTTCCTCAAGGATCTGGATGCTTCAAAATATGATGTTCAGGTTGTTTCGCCTCAGAATTATTTCTCATTTACTCCTTTATTGCCTAGTGTAACATGTGGATCAGTTGAAGCACGAAGCATTGTGGAACCGGTTCGAAACATCGTGAAGAAGAGTAAAGGTGAAATTAAATTCTGGGAAGCTGAATGCACAAAGATTGATGCTGCAAACAAAAAGGTTTTCTGCCGGTCTAATGCTGACAATAACTTGGTTGGAAATAGGGAGTTTGCTTTAGAATATGACTACTTGGTAATAGCAATGGGAGCACAAGTTAATACTTTTAATACTCCTGGTGTCAAGGAGAACTGTCATTTTCTCAAGGAAGTGAAAGATGCTCAAAAGATCCGCAGAAGTGTGATAGATTGCTTTGAAATGGCTGTGATTCCTAGTCTAAGTGAAGAAGAGCGAAGGAGAAATCTTCATTTTGTTATTGTTGGAGGAGGTCCCACTGGGGTTGAATTTGCTGCAGAGCTTCATGACTTTTTTGAAGAAGATTTAGTTAATTTATATCCTACGGTTAAAGATATGGTGAAAATTTCAGTGATTCAATCAGGAGATCACATCTTGAATGCGTTTGATGAAAGAATTAGTTCATTTGCCGAACAAAAATTCCAAAGAGATGGTATTGATGTGTACACCGGATGTCGAGTTGTCAGTGTATCTGATCAGGAAATTAAGATGAAGGTGAAATCAACTGGAGAAGTCTGTTCAATACCACACGGACTAATTGTGTGGTCTACGGGCATCATGACTCGTCCTGTTGTGAAGGATTTCATGGAGCAGATTGGCCAGGGTAGTAGACGCATTCTAGCCACTGATGAATGGCTTCAAGTGAAGGGCGCTCAAAATGTGTATGCCATTGGTGATTGTGCTACAATGGACCAACGAAAAATTATGGAAGATATTGCAACCATATTTAAAGAGGCAGACAAAGATAATTCTGGAACCTTAACGGTTGCAGAATTTCAAGATGTTCTAGATGATATCCTCATAAGGTATCCTCAAGTAGAAATATATTTGAGGAGCAAACATCTACGTGATGTAAAAGATCTATTGAAAGATTCCCAGGGACATGAGAACGATATAGATATTGAAGGATTTAAGTCGGCTCTTTCTCATGCTGACTCGCAGATGAAAAGTCTGCCTGCTACTGCACAGGTTGCTGCCCAACAAGGTGCGTATCTTTGCAGGTGCTTCAACCGTAGGGACCATTGCACAGAGAATCCTGAAGGCCCTCGACGTTTTAAGAGTTCTGGACGTCATCAATTCCTTCCCTTTCGGTACAAGCACTTGGGACAGTTCGCTCCTTTAGGGGGAGAACAAGCTGCTGCAGAACTCCCTGGAGACTGGGTTTCCATGGGTCGCAGCACTCAGTGGCTTTGGTATTCTGTATATGCAAGCAAGCAAGTCAGCTGGCGCACAAGGTATTTAGTGGTATTAGATTGGACAAGAAAGTTTATATTTGGCAGAGACTCGAGCGGCATCTGA 1725 42.32 MTFFSFFSRASRSFHGSPAYSKLLVISTLSSGGLLAYADSQSDAGSPIEECPKQRVVVLGTGWAGTSFLKDLDASKYDVQVVSPQNYFSFTPLLPSVTCGSVEARSIVEPVRNIVKKSKGEIKFWEAECTKIDAANKKVFCRSNADNNLVGNREFALEYDYLVIAMGAQVNTFNTPGVKENCHFLKEVKDAQKIRRSVIDCFEMAVIPSLSEEERRRNLHFVIVGGGPTGVEFAAELHDFFEEDLVNLYPTVKDMVKISVIQSGDHILNAFDERISSFAEQKFQRDGIDVYTGCRVVSVSDQEIKMKVKSTGEVCSIPHGLIVWSTGIMTRPVVKDFMEQIGQGSRRILATDEWLQVKGAQNVYAIGDCATMDQRKIMEDIATIFKEADKDNSGTLTVAEFQDVLDDILIRYPQVEIYLRSKHLRDVKDLLKDSQGHENDIDIEGFKSALSHADSQMKSLPATAQVAAQQGAYLCRCFNRRDHCTENPEGPRRFKSSGRHQFLPFRYKHLGQFAPLGGEQAAAELPGDWVSMGRSTQWLWYSVYASKQVSWRTRYLVVLDWTRKFIFGRDSSGI 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7078655 7083186 - Lag0015048.1 Lac12g0676 589273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0676 574 SUPERFAMILY EF-hand 371 460 IPR011992 -
Lac12g0676 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 159 177 - -
Lac12g0676 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 56 75 - -
Lac12g0676 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 220 238 - -
Lac12g0676 574 ProSitePatterns EF-hand calcium-binding domain. 389 401 IPR018247 -
Lac12g0676 574 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 422 573 - -
Lac12g0676 574 SUPERFAMILY FAD/NAD(P)-binding domain 219 373 IPR036188 -
Lac12g0676 574 Gene3D - 48 400 - -
Lac12g0676 574 Gene3D - 422 573 - -
Lac12g0676 574 Pfam Pyridine nucleotide-disulphide oxidoreductase 55 377 IPR023753 GO:0016491(InterPro)
Lac12g0676 574 SUPERFAMILY FAD/NAD(P)-binding domain 54 272 IPR036188 -
Lac12g0676 574 PANTHER NADH DEHYDROGENASE 44 572 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
Lac12g0676 574 ProSiteProfiles EF-hand calcium-binding domain profile. 376 411 IPR002048 GO:0005509(InterPro)
Lac12g0676 574 SMART efh_1 380 408 IPR002048 GO:0005509(InterPro)
Lac12g0676 574 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 46 405 - -
Lac12g0676 574 Pfam NDH2 C-terminal domain 509 570 IPR054585 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0676 Lac-Chr12:7078655 Lac9g2384 Lac-Chr9:43006185 3.30E-72 dispersed
Lac1g3300 Lac-Chr1:52775179 Lac12g0676 Lac-Chr12:7078655 2.30E-67 wgd
Lac10g0805 Lac-Chr10:6387785 Lac12g0676 Lac-Chr12:7078655 3.40E-234 wgd
Lac12g0676 Lac-Chr12:7078655 Lac9g2123 Lac-Chr9:40850736 3.50E-223 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0676 K03885 - csv:101203130 1080.86