Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0692 ATGGGTGGTTGTGTCTCTACAAGCAGCCATAGTACGTGTAGTAGCCAGAGCAATGGAGAATCAGTTTCTTCCTCATGTATGGGAATTGGATTTCGAGGTCGAAAGCGAACAAAGCGAACGTTCTCCGACCATGTTTATGCTCTTCAGAATCTTCCTTCAGCTCCCAACAGGATCTTCATGAATGGAAAAAGTCGTTCTTCTTGCATTTTCACGCAACAAGGACGCAAGGGCATAAACCAGGATGCCATGGTTGTGTGGGAAGATTTCATGCCCGAGGACACGATCTTTTGCGGTGTATTTGATGGTCATGGACCTTATGGCCATCTCGTTGCTCGAAAAGTGAGGGATACGTTGCCTATAAAGTTGCTGTCATCCTTCCAGTCTCCTCAGTTGAAGCAAAATGACTCTGGTAAAACCTGTTTCCAGAGGAATTTGAAGAAACCTCCGGATTGTGAAGATTCTGAGAAGGATGGTTTTGCAGAGGACTCGCAGAATTCGTTATGGAGAGACGCGTTTTTGAACTCGTATAAAGCTATGGATAAGGAGTTGAGATCACATCCTAATCTGGACTGCTTTTGTAGTGGTAGTACTGCAGTCACCATAGTTAAACAGGGGTCAAATCTCTTCATGGGGTATATAGGGGACTCTCGAGCAATCCTCGCTTCAAAGGACGCCAACGATTCCACAGTCGCGGTCCAATTGACTGTGGATCTTAAGCCAGATTTGCCAAGAGAAGCTGAAAGAATTAAAAGGTGTAAAGGTAGGGTCTTTGCATTGCAAGATGAGCCTGAAGTGCCAAGGGTATGGTTACCTTTCGACGATGCGCCTGGTTTAGCAATGGCTCGAGCATTTGGCGATTTCTGTTTGAAAGAATATGGAGTTATCTCTATACCTGAATTCTCTCATCGTACACTCACCGACGCTGATCAGTTCATCGTTCTTGCATCAGATGGGGTATGGGATGTGTTGAGCAATGAAGAGGTGGTTGACATAGTGTCCTCGGCCCCAACTCGCTCGTCTGCTGCGAGGTCTGTGGTTGACTCTGCTGCTCGTGAATGGAAACTCAAATACCCTACCTCGAAAATGGATGACTGCGCTGTTGTCTGCTTATTTTTGGATGGGAGGATGGACTCTGAATCCGACTGTGATGAACAAGGCTTCTCATCTGCAACATTGCGTAGTAATCATTCGGGTACCGCTATCGAATCCGATGATGGCCAGAGGTCTGAGCCATGCTTGCAAAGGAATAACACTGTCAGATCATCGGAGGAAAACAATACGTACAGGGCATTACCTGTTGACGACGGGGAGATTGGCGACGTTGTACCTGCAGAAGATCAAAACTGGTCGGGTTTGGAAGGAGTCACTCGAGTAAACTCGCTTGTTCAGCTTCCTAGATTCTCTGAAGAAAGGCCAGTGTCATAG 1425 46.6 MGGCVSTSSHSTCSSQSNGESVSSSCMGIGFRGRKRTKRTFSDHVYALQNLPSAPNRIFMNGKSRSSCIFTQQGRKGINQDAMVVWEDFMPEDTIFCGVFDGHGPYGHLVARKVRDTLPIKLLSSFQSPQLKQNDSGKTCFQRNLKKPPDCEDSEKDGFAEDSQNSLWRDAFLNSYKAMDKELRSHPNLDCFCSGSTAVTIVKQGSNLFMGYIGDSRAILASKDANDSTVAVQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRTLTDADQFIVLASDGVWDVLSNEEVVDIVSSAPTRSSAARSVVDSAAREWKLKYPTSKMDDCAVVCLFLDGRMDSESDCDEQGFSSATLRSNHSGTAIESDDGQRSEPCLQRNNTVRSSEENNTYRALPVDDGEIGDVVPAEDQNWSGLEGVTRVNSLVQLPRFSEERPVS 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7201165 7203086 - Lag0015064.1 Lac12g0692 589289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0692 474 MobiDBLite consensus disorder prediction 131 159 - -
Lac12g0692 474 MobiDBLite consensus disorder prediction 383 447 - -
Lac12g0692 474 MobiDBLite consensus disorder prediction 145 159 - -
Lac12g0692 474 MobiDBLite consensus disorder prediction 383 428 - -
Lac12g0692 474 FunFam probable protein phosphatase 2C 52 57 375 - -
Lac12g0692 474 CDD PP2Cc 65 372 IPR001932 -
Lac12g0692 474 ProSiteProfiles PPM-type phosphatase domain profile. 66 372 IPR001932 -
Lac12g0692 474 PANTHER PROTEIN PHOSPHATASE 67 371 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lac12g0692 474 SMART PP2C_4 55 370 IPR001932 -
Lac12g0692 474 SUPERFAMILY PP2C-like 56 374 IPR036457 -
Lac12g0692 474 Pfam Protein phosphatase 2C 163 350 IPR001932 -
Lac12g0692 474 Gene3D - 57 374 IPR036457 -
Lac12g0692 474 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0692 Lac-Chr12:7201165 Lac5g0625 Lac-Chr5:7426645 5.40E-121 dispersed
Lac12g0692 Lac-Chr12:7201165 Lac9g2142 Lac-Chr9:40949550 2.60E-184 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0692 - - - 0.0