Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0702 ATGTATCTTCCAATCGATTATTTGGCATATGAGATGATGCCCATCCACCATTGCAGTCTGTCGGTTTGGAAAACACAGACGACTCCGACTAGAGGACGGCGACGGCTGGCGGACTGCGATGGTTGGGAAATAAAAATGTTCTGGACTGGACGCACGACGACTGAATGGAGACTTGTGGATCCTTCGTCGATATTGTCTCCACGTGTGGACAGAACTCTTGTTCGGTCGAGAGCTACTTCAACATTGTCTAGCTCTCATTCCAGCAGATTCAAACCTCCTTCAACTGTTGTGCCACTTCACGGCGGCGCCGTCGACTTTCAACCACCGTCAACAATGCAGCTCCGCCGTGGCCATGCTACATTTTCGTCTTTTGGGCACTTGTGGAGTGTGACAATGTTGGTTAATGTGGTGGTGATGGGGAAGTTTCTTCTGGTTGAATCAGCTCCGCTCCGAAACCGGACGTCAGCTTCACATTGGCTCCCCGCTACCGCCACCTGGTACGGCAGCCCCGAAGGCGACGGCAGCGATGGTGGAGCATGTGGGTACGGTAATTTGGTGGATGTGAGGCCATTTAAAGCTAGAGTTGGGGCAGTGAGCCCAGTCCTATTCAAAGACGGCGAAGGGTGTGGCGCATGCTACAAAGTCCTCTGCTTGGACCGAACTATATGCTCCAAACGGGCCGTTACCATAATAGTTACTGACGAGTGTCCCGGTGGCTATTGTGCCAATGGTCGCACCCACTTCGACCTTAGTGGTGCCGCCTTCGGTCGCATGGCCGTTGCCGGTGCTCACAGTCGTCTTCGAGATCGTGGTGAACTCTCTGTCGTCTATAGACGGACTCCATGTATGTATCGAGGGAAGAACATAGCATTCCATGTGAATGAAGGTTCTACGGATCATTGGCTATCTCTTTTGGTGGAGTTCGAGGATGGAGATGGAGATATTGGGTCTATGCAAATCAAACAAGCAAGTTCGAGCGAGTGGATGGAAATGGCACACGTGTGGGGCGCAACATGGTGCATAAATGGAGGGCCTTTGCAGGGCCCATTTTCAGTGAAGCTTACAACATTATCCACAGCCAAAACTCTCTCAGCAAGAGATGTTATTCCAAAGAATTGGTCTCCAAAGGCTACTTATACTTCTCGCTTGAACTTTTTGTGA 1161 50.9 MYLPIDYLAYEMMPIHHCSLSVWKTQTTPTRGRRRLADCDGWEIKMFWTGRTTTEWRLVDPSSILSPRVDRTLVRSRATSTLSSSHSSRFKPPSTVVPLHGGAVDFQPPSTMQLRRGHATFSSFGHLWSVTMLVNVVVMGKFLLVESAPLRNRTSASHWLPATATWYGSPEGDGSDGGACGYGNLVDVRPFKARVGAVSPVLFKDGEGCGACYKVLCLDRTICSKRAVTIIVTDECPGGYCANGRTHFDLSGAAFGRMAVAGAHSRLRDRGELSVVYRRTPCMYRGKNIAFHVNEGSTDHWLSLLVEFEDGDGDIGSMQIKQASSSEWMEMAHVWGATWCINGGPLQGPFSVKLTTLSTAKTLSARDVIPKNWSPKATYTSRLNFL 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7265501 7271347 - Lag0015074.1 Lac12g0702 589299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0702 386 PRINTS Major pollen allergen Lol pI signature 197 208 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lac12g0702 386 PRINTS Major pollen allergen Lol pI signature 291 306 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lac12g0702 386 PRINTS Major pollen allergen Lol pI signature 307 322 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lac12g0702 386 PRINTS Major pollen allergen Lol pI signature 259 274 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lac12g0702 386 PRINTS Major pollen allergen Lol pI signature 357 374 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lac12g0702 386 PRINTS Major pollen allergen Lol pI signature 237 252 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lac12g0702 386 Pfam Lytic transglycolase 197 261 IPR009009 -
Lac12g0702 386 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 300 381 IPR007117 -
Lac12g0702 386 Gene3D - 283 386 IPR036749 -
Lac12g0702 386 FunFam Expansin B3 146 283 - -
Lac12g0702 386 SUPERFAMILY Barwin-like endoglucanases 151 286 IPR036908 -
Lac12g0702 386 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 177 287 IPR007112 -
Lac12g0702 386 Pfam Expansin C-terminal domain 289 370 IPR007117 -
Lac12g0702 386 PANTHER EXPANSIN-B3 138 385 - GO:0006949(PANTHER)|GO:0009506(PANTHER)
Lac12g0702 386 SMART dpbb_1 195 277 IPR007112 -
Lac12g0702 386 FunFam Beta-expansin 3 284 386 - -
Lac12g0702 386 CDD DPBB_EXPB_N 159 282 - -
Lac12g0702 386 Gene3D - 144 282 IPR036908 -
Lac12g0702 386 SUPERFAMILY PHL pollen allergen 287 381 IPR036749 -
Lac12g0702 386 PRINTS Expansin/Lol pI family signature 199 217 IPR007118 GO:0005576(InterPro)
Lac12g0702 386 PRINTS Expansin/Lol pI family signature 176 194 IPR007118 GO:0005576(InterPro)
Lac12g0702 386 PRINTS Expansin/Lol pI family signature 270 286 IPR007118 GO:0005576(InterPro)
Lac12g0702 386 PRINTS Expansin/Lol pI family signature 158 173 IPR007118 GO:0005576(InterPro)
Lac12g0702 386 PRINTS Expansin/Lol pI family signature 328 342 IPR007118 GO:0005576(InterPro)
Lac12g0702 386 PRINTS Expansin/Lol pI family signature 367 381 IPR007118 GO:0005576(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0702 Lac-Chr12:7265501 Lac7g0069 Lac-Chr7:603760 4.00E-66 dispersed
Lac12g0702 Lac-Chr12:7265501 Lac9g2157 Lac-Chr9:41043763 1.30E-117 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0702 K20628 - csv:101205324 468.388