Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0736 ATGGCTCCGTTCCCGTTCTCGTCCTCGTCCTTCAAAACCTTCATCTTGTTACTCCAGTTATCTTCTCTGTTTAACAGCCTGACCGCAAAACACGGTGGCGGTGGCGTCACCACCCATAACGACCGCCACCACCACCGTGTCCAATCACCGAACCCGAACCCGAACCCGAGACTCCACCAAGCATTCCTTGCCCTCCAAGCATGGAAAAAAGTCATTTACTCCGACCCAAAAAACCACACTACCAATTGGGTGGGGCCTTCAGTTTGCAACTACTTTGGAGTGTACTGTGCCCCAGCTCTCGATGACCCAAAACTCCAAGTCGTAGCCGGAATCGACTTAAACCACGGCGACATCGCCGGATTCCTCCCAAACGAATTGGGCCTTTTAACAGACCTTGCTCTGTTCCATCTCAACAGCAACCGTTTCTGCGGCATTTTGCCTCAATCTTTAGCCAATTTATCTCTTCTCTTCGAACTTGATTTGAGCAACAACAGATTCGTCGGCCCTTTTCCTTCTGTCGTTCTCCACCTTCCCAAATTAACATATCTCGACCTTCGATTCAACGAATTCGAAGGCCCAATTCCGCCGGAACTCTTCAACAAAAGCCTCGACGCCATCTTCATCAACAGCAACCGTTTCACCAACATTATCCCTCGAAACATCGGCGGAAAATCAGCCTCTGTGATCGTCTTTGCCAACAACAATTTCAACGGCTGTCTCCCACCGACGATTGCGAGCTTTGCGAACAGTTTAGAAGAGCTTTTGTTGATCAACACTAGCTTATCGGGCTGTTTGCCTCAAGAAATTGGGTTTCTGTACAAATTGAAGGTTTTGGATGTGAGTTTTAACGAATTGGTGGGTCCTTTGCCTTATAGTTTAGCTGGGTTGGCTCAATTGGAGCAACTGAATTTGGCCCACAATTTGTTTACTGGGAATTTGTATGAAGGGATCTGTAACCTTCCAAATTTGGAGAATGTGACGGTTTCTTACAATTATTTCTGTGAGGAAGAGGGGATTTGCCGGAATTTGACGGCGAAAGGGGTTGCTTTTGATGATCGTCGGAATTGTTTGCCGGAGAAGCCGTTGCAGAGGAGTAAGAAGGAGTGTAGTGCGGTGGTTGAGCATCCGGTTGACTGTTTTGAGCATCCGTGCGGCGGCGGCGGCGGCGGTTATGGTTCTAGTATTGCGGCGGTTCCGGCTTCTACGCCCATTTCTTTACCTTCTTCTTCCGTTGTTGCCCCTACCCACTTGTGA 1254 48.72 MAPFPFSSSSFKTFILLLQLSSLFNSLTAKHGGGGVTTHNDRHHHRVQSPNPNPNPRLHQAFLALQAWKKVIYSDPKNHTTNWVGPSVCNYFGVYCAPALDDPKLQVVAGIDLNHGDIAGFLPNELGLLTDLALFHLNSNRFCGILPQSLANLSLLFELDLSNNRFVGPFPSVVLHLPKLTYLDLRFNEFEGPIPPELFNKSLDAIFINSNRFTNIIPRNIGGKSASVIVFANNNFNGCLPPTIASFANSLEELLLINTSLSGCLPQEIGFLYKLKVLDVSFNELVGPLPYSLAGLAQLEQLNLAHNLFTGNLYEGICNLPNLENVTVSYNYFCEEEGICRNLTAKGVAFDDRRNCLPEKPLQRSKKECSAVVEHPVDCFEHPCGGGGGGYGSSIAAVPASTPISLPSSSVVAPTHL 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7686269 7687522 - Lag0015108.1 Lac12g0736 589333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0736 417 Pfam Leucine rich repeat 132 189 IPR001611 GO:0005515(InterPro)
Lac12g0736 417 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 41 394 IPR051582 -
Lac12g0736 417 SUPERFAMILY L domain-like 61 335 - -
Lac12g0736 417 Pfam Leucine Rich Repeat 298 320 IPR001611 GO:0005515(InterPro)
Lac12g0736 417 Pfam Leucine Rich Repeat 274 296 IPR001611 GO:0005515(InterPro)
Lac12g0736 417 Gene3D Ribonuclease Inhibitor 61 226 IPR032675 -
Lac12g0736 417 MobiDBLite consensus disorder prediction 34 53 - -
Lac12g0736 417 FunFam Leucine-rich repeat extensin-like protein 1 62 223 - -
Lac12g0736 417 Gene3D Ribonuclease Inhibitor 227 350 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0736 Lac-Chr12:7686269 Lac4g0561 Lac-Chr4:12624701 1.40E-40 dispersed
Lac12g0736 Lac-Chr12:7686269 Lac3g0975 Lac-Chr3:7943378 2.90E-22 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0736 - - - 0.0