Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0736 ATGGCTCCGTTCCCGTTCTCGTCCTCGTCCTTCAAAACCTTCATCTTGTTACTCCAGTTATCTTCTCTGTTTAACAGCCTGACCGCAAAACACGGTGGCGGTGGCGTCACCACCCATAACGACCGCCACCACCACCGTGTCCAATCACCGAACCCGAACCCGAACCCGAGACTCCACCAAGCATTCCTTGCCCTCCAAGCATGGAAAAAAGTCATTTACTCCGACCCAAAAAACCACACTACCAATTGGGTGGGGCCTTCAGTTTGCAACTACTTTGGAGTGTACTGTGCCCCAGCTCTCGATGACCCAAAACTCCAAGTCGTAGCCGGAATCGACTTAAACCACGGCGACATCGCCGGATTCCTCCCAAACGAATTGGGCCTTTTAACAGACCTTGCTCTGTTCCATCTCAACAGCAACCGTTTCTGCGGCATTTTGCCTCAATCTTTAGCCAATTTATCTCTTCTCTTCGAACTTGATTTGAGCAACAACAGATTCGTCGGCCCTTTTCCTTCTGTCGTTCTCCACCTTCCCAAATTAACATATCTCGACCTTCGATTCAACGAATTCGAAGGCCCAATTCCGCCGGAACTCTTCAACAAAAGCCTCGACGCCATCTTCATCAACAGCAACCGTTTCACCAACATTATCCCTCGAAACATCGGCGGAAAATCAGCCTCTGTGATCGTCTTTGCCAACAACAATTTCAACGGCTGTCTCCCACCGACGATTGCGAGCTTTGCGAACAGTTTAGAAGAGCTTTTGTTGATCAACACTAGCTTATCGGGCTGTTTGCCTCAAGAAATTGGGTTTCTGTACAAATTGAAGGTTTTGGATGTGAGTTTTAACGAATTGGTGGGTCCTTTGCCTTATAGTTTAGCTGGGTTGGCTCAATTGGAGCAACTGAATTTGGCCCACAATTTGTTTACTGGGAATTTGTATGAAGGGATCTGTAACCTTCCAAATTTGGAGAATGTGACGGTTTCTTACAATTATTTCTGTGAGGAAGAGGGGATTTGCCGGAATTTGACGGCGAAAGGGGTTGCTTTTGATGATCGTCGGAATTGTTTGCCGGAGAAGCCGTTGCAGAGGAGTAAGAAGGAGTGTAGTGCGGTGGTTGAGCATCCGGTTGACTGTTTTGAGCATCCGTGCGGCGGCGGCGGCGGCGGTTATGGTTCTAGTATTGCGGCGGTTCCGGCTTCTACGCCCATTTCTTTACCTTCTTCTTCCGTTGTTGCCCCTACCCACTTGTGA 1254 48.72 MAPFPFSSSSFKTFILLLQLSSLFNSLTAKHGGGGVTTHNDRHHHRVQSPNPNPNPRLHQAFLALQAWKKVIYSDPKNHTTNWVGPSVCNYFGVYCAPALDDPKLQVVAGIDLNHGDIAGFLPNELGLLTDLALFHLNSNRFCGILPQSLANLSLLFELDLSNNRFVGPFPSVVLHLPKLTYLDLRFNEFEGPIPPELFNKSLDAIFINSNRFTNIIPRNIGGKSASVIVFANNNFNGCLPPTIASFANSLEELLLINTSLSGCLPQEIGFLYKLKVLDVSFNELVGPLPYSLAGLAQLEQLNLAHNLFTGNLYEGICNLPNLENVTVSYNYFCEEEGICRNLTAKGVAFDDRRNCLPEKPLQRSKKECSAVVEHPVDCFEHPCGGGGGGYGSSIAAVPASTPISLPSSSVVAPTHL 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7686269 7687522 - Lag0015108.1 Lac12g0736 589333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0736 417 Pfam Leucine rich repeat 132 189 IPR001611 GO:0005515(InterPro)
Lac12g0736 417 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 41 394 IPR051582 -
Lac12g0736 417 SUPERFAMILY L domain-like 61 335 - -
Lac12g0736 417 Pfam Leucine Rich Repeat 298 320 IPR001611 GO:0005515(InterPro)
Lac12g0736 417 Pfam Leucine Rich Repeat 274 296 IPR001611 GO:0005515(InterPro)
Lac12g0736 417 Gene3D Ribonuclease Inhibitor 61 226 IPR032675 -
Lac12g0736 417 MobiDBLite consensus disorder prediction 34 53 - -
Lac12g0736 417 FunFam Leucine-rich repeat extensin-like protein 1 62 223 - -
Lac12g0736 417 Gene3D Ribonuclease Inhibitor 227 350 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0736 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0736 Lac-Chr12:7686269 Lac4g0561 Lac-Chr4:12624701 1.40E-40 dispersed
Lac12g0736 Lac-Chr12:7686269 Lac3g0975 Lac-Chr3:7943378 2.90E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g277 . . . . . . . . . . . . . . Sed05g1943 . . Bhi05g01965 Tan02g0208 Cmetu01g0388 Lac12g0736 Hepe02g0129 . . . . . . . . . . . . Cone12ag1471 . . . Cme01g00299 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01698 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac2g0269 . 39 289 Leucine-rich Repeat extension Gene Families AT1G62440 61.7 2.6e-51 201.4
Lac4g0561 . 39 407 Leucine-rich Repeat extension Gene Families AT1G62440 53.1 6.5e-47 186.8
Lac2g0271 . 33 256 Leucine-rich Repeat extension Gene Families AT1G62440 64.7 8.5e-47 186.4
Lac3g0886 . 61 269 Leucine-rich Repeat extension Gene Families AT1G62440 62.4 4.2e-46 184.1
Lac6g2988 . 72 241 Leucine-rich Repeat extension Gene Families AT1G62440 70.0 6.3e-42 170.2
Lac3g0886 . 32 403 Leucine-rich Repeat extension Gene Families AT4G13340 78.3 7.9e-74 276.2
Lac6g2988 . 15 418 Leucine-rich Repeat extension Gene Families AT4G13340 71.6 1.3e-63 242.3
Lac2g0269 . 22 233 Leucine-rich Repeat extension Gene Families AT4G13340 63.2 1.1e-48 192.6
Lac4g0561 . 22 233 Leucine-rich Repeat extension Gene Families AT4G13340 61.3 7.7e-45 179.9
Lac2g0271 . 32 200 Leucine-rich Repeat extension Gene Families AT4G13340 72.2 6.5e-44 176.8
Lac3g0886 . 22 398 Leucine-rich Repeat extension Gene Families AT3G24480 75.4 3.4e-78 290.0
Lac6g2988 . 47 418 Leucine-rich Repeat extension Gene Families AT3G24480 73.8 7.7e-70 262.3
Lac2g0269 . 22 233 Leucine-rich Repeat extension Gene Families AT3G24480 67.1 1.6e-54 211.5
Lac4g0561 . 22 401 Leucine-rich Repeat extension Gene Families AT3G24480 55.8 5.2e-50 196.4
Lac2g0271 . 32 200 Leucine-rich Repeat extension Gene Families AT3G24480 75.1 5.3e-47 186.4
Lac7g0710 . 110 393 Leucine-rich Repeat extension Gene Families AT3G22800 76.8 9.0e-52 202.2
Lac3g0886 . 71 399 Leucine-rich Repeat extension Gene Families AT3G22800 65.3 3.1e-44 177.2
Lac12g0736 . 57 384 Leucine-rich Repeat extension Gene Families AT3G22800 61.1 5.1e-39 159.8
Lac2g0269 . 63 387 Leucine-rich Repeat extension Gene Families AT3G22800 53.1 3.1e-36 150.6
Lac3g0886 . 45 403 Leucine-rich Repeat extension Gene Families AT5G25550 58.7 3.3e-40 163.7
Lac6g2988 . 58 417 Leucine-rich Repeat extension Gene Families AT5G25550 63.0 8.0e-39 159.1
Lac4g0561 . 36 403 Leucine-rich Repeat extension Gene Families AT5G25550 53.2 1.2e-37 155.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012968 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 28