Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0742 ATGAGCAGCGTTTGTGCTGAGAATCACAAATTTCAGTTTCACTTTCAATTTCCTTCTTCTGATTCTTGTTGTTCTTCTGATTTTGTTTCTGAGAGGATTCCTTTTCTCAAGGACATCAACGTTCCGCCGAGAAAGCTTCTCGCGGCGCGACGTGACAACGGCGAAATGTCTTCTGATTCGCCTCGATTTTCGTTTGCTGTTGAATCGCTTTTGCAGAAGTTTTTGCCGTTCAACGGCGAGGATGAGGCGGACGAGGACGGTGATCCGTATTCGTCCGATCATTTTCGGATGTATGAGTTTAAGGTGAGGCGGTGTACTCGTAGTCGGAGCCATGATTGGACGGATTGTCCGTTTGCTCATCCTGGAGAGAAGGCGCGGCGCCGGGATCCTCGTCGGTTTCATTACTCCGGCACGATGTGTCCGGAGTTCCGGCGCGGCGGTTGCGGCCGTGGCGATGGATGTGAGTTCGCTCATGGAGTTTTTGAGTGCTGGCTTCATCCGGCGAGGTATCGGACTGAGGCTTGTAAAGATGGAAAGAACTGTAAGAGGAAGGTTTGTTTCTTTGCTCATTCGCCTCGTGAGCTTCGTCTTTTACCGCCAGTAGGTAATTTTCAAGGCGGCGGCGGCGGCTCTTGTTCTTCGCCGAATAAGAAGAGTTCTAATCTCAGATCGGCCGCTGGTACTAATCACTGCTGTCTGTTTTGTCATTGCGGCGGAGCCGCCACCTCCTCGCCGACGTCGACGCTTTTCGGAATGTCTCATCTCTCTCCGCCGCACTCGCCGCCTCTCTCGCCGGGAAAACCTCGGTCAATGAATGGATTTTCGCCGATCTCGAGGTATAATCCTGATCAGTCTAAATTAAATGGAGTTTTGAGCTATAAAGATGCACTGACTGAGCTCATGAGCTCTATTGAATCCATGAATATCGACGACGCTAATGCCACTCTAGCCGCCGCTGCCGCCATCTCCGCCCCTAGACCAACACCGCCTTGGATCGATGTTTCATCCCTCAACGCCGAAGATCAACTGCAGTTCATTCTCTCACCTTCCACTCCAAATCTCTCCGCCGCACCAGGGAACTTTTCCGGCGAGAACAAAGGCACCGCCGACAATGGATGGGGCTCCGCCTCCGGTCCCGATCTCGGATGGGTTAACGATCTGCTGATGTAA 1170 52.22 MSSVCAENHKFQFHFQFPSSDSCCSSDFVSERIPFLKDINVPPRKLLAARRDNGEMSSDSPRFSFAVESLLQKFLPFNGEDEADEDGDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTMCPEFRRGGCGRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLLPPVGNFQGGGGGSCSSPNKKSSNLRSAAGTNHCCLFCHCGGAATSSPTSTLFGMSHLSPPHSPPLSPGKPRSMNGFSPISRYNPDQSKLNGVLSYKDALTELMSSIESMNIDDANATLAAAAAISAPRPTPPWIDVSSLNAEDQLQFILSPSTPNLSAAPGNFSGENKGTADNGWGSASGPDLGWVNDLLM 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7759172 7760341 + Lag0015114.1 Lac12g0742 589339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0742 389 Gene3D - 133 197 - -
Lac12g0742 389 FunFam Zinc finger CCCH domain-containing protein 66 92 160 - -
Lac12g0742 389 PANTHER UNKEMPT FAMILY MEMBER 59 327 IPR045234 -
Lac12g0742 389 ProSiteProfiles Zinc finger C3H1-type profile. 135 161 IPR000571 GO:0046872(InterPro)
Lac12g0742 389 SMART c3hfinal6 134 160 IPR000571 GO:0046872(InterPro)
Lac12g0742 389 SMART c3hfinal6 169 192 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0742 Lac-Chr12:7759172 Lac2g0440 Lac-Chr2:3241725 2.60E-57 dispersed
Lac5g2755 Lac-Chr5:45962772 Lac12g0742 Lac-Chr12:7759172 6.80E-47 transposed
Lac12g0742 Lac-Chr12:7759172 Lac3g0988 Lac-Chr3:8046319 2.40E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23043 None None None None Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0742 K23047 - csv:101211149 583.563