Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0743 ATGATGAAGCGTTATGTTTACATCAATGATGATGAAGCATCAAATGATCTTTATTGCGATAACCGCATTTCAAACAGGAAATACACATTATTGAACTTTCTCCCAAAAAATTTATGGGAACAGTTCAGCCGCTTCATGAACCAATACTTTTTGTTAATTGCATGCCTACAGTTATGGCCGCTTATAACTCCAGTAAATCCTGCCAGTACATGGGGTCCACTCATCTTCATTTTTGCTGTGTCTGCAACAAAAGAGGCATGGGATGATTACAATAGATATTTGTCAGACAAAAAAGCAAATGAGAAAGAAGTTTGGGTTGTGAAGCAGGGTACCAGAAAAATTATTCAAGCACAAGATATTCATGTTGGTAATTTAGTATGGCTCAGGGAGAATGACGAAGTGCCTTCAGATCTTGTTTTGATTGGTACCTCTGATCCTCAAGGAATTTGCTATATAGAGACATCTGCCCTTGATGGAGAAACTGACTTGAAGACAAGGGTCATACCCTCAGCCTGCATGGGAATAGATTTTGATCTATTAAACAAGATCAAGGGAGTTATAGAGTGCCCTAAACCAGATAAGGATATTAGAAGATTTGATGCAAACATTCGGTTATTTCCTCCTTTCATTGATAATGATGTGTGCCCTTTGACCATAAAAAACACAATTCTTCAGTCATGCAATGAAACCAAGCTTGGAATGAGCAGGGGTGTCCCAGAACCAAAACTTACAGCTATGGATGCAATGATTGACAAGTTAACTGGTGCTATATTTGTTTTTCAACTTGTGGTGGTTGTTGTTCTCGGTATAGCTGGTAATGTGTGGAAGGATTCTGAAGCCAGAAAGCTATGGTATGTGCAACATCCAGAGGAAGGTCCATGGTATGAACTACTGGTCATCCCTCTTCGGTTTGAGCTTCTTTGTTCAATCATGATACCCATTTCAATTAAGGTGTCTCTGGATCTTGTAAAGAGCTTATATGCAAAATTTATTGATTGGGACTATGATATGGTTGACCGTGAGACTGGTATTCCTTCCCATGCTACGAATACAGCAATAAGTGAGGACCTCGGACAAGTCGAATACATTTTGACGGATAAAACCGGTACCCTCACTGAAAATAAGATGATCTTCAGGAGATGTTGTATCAGTGGCATTTTTTATGGAAATGAAAATGGAGATGCCCTGAAAGATAAAAAGTTGCTCAATGCTATTGCAAGCAGCTCTCCAGATGTTATAAGATTTCTCACAATTATGGCAATATGCAATACAGTGGTGCCTACAAAAAGCAAAAGTGGAAATATTTTGTACAAGGCACAGTCACAGGATGAGGATGCTCTCGTGAATGCTGCTGCTTTTTTGCATATGGTATTTGTCAATAAGAATGCTAATATTCTTGAAATTCAGTTTAATGGAATGCTAAATAGATATGAGCTCCTAGATACTCTGGAGTTCACATCTGAACGAAAAAGAATGTCCGTGGTCGTTAAAGATTGTCAGAATGGGAAGATTGTCCTCCTGTCAAAAGGAGCAGATGAAGCTATACTTCCTCATGCTTATGCCGGCCAGCAAACAAGAACATTTATTGAAGCCGTGGATCAATATGCACAACTGGGGCTCCGCACATTATGTCTGGCTTGGTGTGAATTAGAGGAAGATGAGTATCGAGAGTGGGCTTTTATGTTTAAGGAGGCTAATAGCACATTGGTTGATAGGGAGTGGAGGTTAGCTGAAGTTTGCCAAAGATTAGAGCGCAATTTTGAAGTCCTTGGAGTTACTGCTATAGAAGATAGGCTACAGGATGGAGTCCCTGAAACAATTGAAACATTAAGAAGAGCAGGAATAAATTTCTGGATGTTAACCGGAGACAAGCAAAATACTGCCATTCAAATAGCTCTTCTATGCAACTTTATTTCACCAGAGCCCAAAGGACAGTTATTATTAATTGATGGAAAAACAGAGGATGAAGTTTGTAGAAGTTTGGAGAGAGTTGTTCTAACTATGAAGACCACGACCTCAGAACCCAAGGATGTTGCTTTCGTTGTTGATGGCTGGGCTCTTGAAATTGCTCTCAAGAATTATCGTAGGGCATTCACTGAATTAGCTATACTATCAAGAACTGCAATATGTTGTCGTGTGACTCCATCACAGAAGGCTCAGCTTGTGGAACTCTTAAAATCATGTGATTATAGAACACTGGCAATTGGAGATGGTGGGAATGATGTGAGGATGATACAACAAGCTGACATTGGAGTTGGCATTAGTGGAAGAGAAGGACTGCAAGCAGCTAGGGCAGCTGATTATAGTATTGGAAAGTTCAGGTTTCTGAAAAGGTTGATTCTAGTTCACGGACGATACTCATACAACCGTACAGCATTTTTGTCACAATATTCATTCTATAAGTCTTTATTGATATGTTTTATCCAGATCTCTTTCTCTTTCATTTCAGGTGTCTCTGGGACCAGTCTATTTAATTCTGTTAGCTTAATGGCTTACAATGTTTTCTACACCAGCATTCCTGTATTAGTTAGTGTCCTCGACAAAGATCTCAGCGAAGAAACAGTAATGCAACATCCTCAGATTTTATTCTACTGCCAAGCTGGGAGGCTTTTAAATCCCAGCACATTTGCTGGATGGTTTGGTCGATCTCTATTTCATGCCGTTGTGGTGTTTGTAATTAGCATACATGCCTACGCTAATGAAAAGAGTGAAATGGTGGAGGTTTCAATGGTGGCTCTATCTGGGTGCATATGGTTACAGGCTTTTGTAGTGACTTTGGAGACCAATTCATTTACAATGTTGCAACATATGGCCATATGGGGGAATTTAGCTGCTTTCTACGTAATCAATTGGATCTTCAGTGCCATTCCTACATCTGGGATGTATACAATAATGTTCCGCTTATGCGGACAACCATCTTATTGGATAACCATATTTCTAATAGTAGGCGTGGGAATGGGGCCACTTCTAGCTATCAAGTACTTCAGATACACATACAGACCAAGCAAAATCAACACTCTTCAGCAGGCTGAACGTTTGGGTGGGCCGATCATGTCGCTGAAAAACATAGAGCACCAGCCTCGGCCCATTGAGAAAGAAATTTCTCCACTGTCAATAACAACAACTACTCAGCCCAAGAACAGAAATACAGTTTACGAACCTCTTCTGTCAGACTCTCCTCCAAATGCCACTAGAAGATCTCTGACATCAGGAACATCTTTTGATTTCTTTCAGACACCGCCCAGTTATTCAAGAAATAAGGATAACTGA 3270 40.03 MMKRYVYINDDEASNDLYCDNRISNRKYTLLNFLPKNLWEQFSRFMNQYFLLIACLQLWPLITPVNPASTWGPLIFIFAVSATKEAWDDYNRYLSDKKANEKEVWVVKQGTRKIIQAQDIHVGNLVWLRENDEVPSDLVLIGTSDPQGICYIETSALDGETDLKTRVIPSACMGIDFDLLNKIKGVIECPKPDKDIRRFDANIRLFPPFIDNDVCPLTIKNTILQSCNETKLGMSRGVPEPKLTAMDAMIDKLTGAIFVFQLVVVVVLGIAGNVWKDSEARKLWYVQHPEEGPWYELLVIPLRFELLCSIMIPISIKVSLDLVKSLYAKFIDWDYDMVDRETGIPSHATNTAISEDLGQVEYILTDKTGTLTENKMIFRRCCISGIFYGNENGDALKDKKLLNAIASSSPDVIRFLTIMAICNTVVPTKSKSGNILYKAQSQDEDALVNAAAFLHMVFVNKNANILEIQFNGMLNRYELLDTLEFTSERKRMSVVVKDCQNGKIVLLSKGADEAILPHAYAGQQTRTFIEAVDQYAQLGLRTLCLAWCELEEDEYREWAFMFKEANSTLVDREWRLAEVCQRLERNFEVLGVTAIEDRLQDGVPETIETLRRAGINFWMLTGDKQNTAIQIALLCNFISPEPKGQLLLIDGKTEDEVCRSLERVVLTMKTTTSEPKDVAFVVDGWALEIALKNYRRAFTELAILSRTAICCRVTPSQKAQLVELLKSCDYRTLAIGDGGNDVRMIQQADIGVGISGREGLQAARAADYSIGKFRFLKRLILVHGRYSYNRTAFLSQYSFYKSLLICFIQISFSFISGVSGTSLFNSVSLMAYNVFYTSIPVLVSVLDKDLSEETVMQHPQILFYCQAGRLLNPSTFAGWFGRSLFHAVVVFVISIHAYANEKSEMVEVSMVALSGCIWLQAFVVTLETNSFTMLQHMAIWGNLAAFYVINWIFSAIPTSGMYTIMFRLCGQPSYWITIFLIVGVGMGPLLAIKYFRYTYRPSKINTLQQAERLGGPIMSLKNIEHQPRPIEKEISPLSITTTTQPKNRNTVYEPLLSDSPPNATRRSLTSGTSFDFFQTPPSYSRNKDN 1089
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7764827 7775304 - Lag0015115.1 Lac12g0743 589340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0743 1089 Gene3D - 587 775 IPR023214 -
Lac12g0743 1089 Pfam haloacid dehalogenase-like hydrolase 582 749 - -
Lac12g0743 1089 SUPERFAMILY Calcium ATPase, transduction domain A 101 172 IPR008250 -
Lac12g0743 1089 Gene3D - 81 228 - -
Lac12g0743 1089 FunFam Phospholipid-transporting ATPase 434 577 - -
Lac12g0743 1089 Gene3D - 432 567 IPR023299 GO:0000166(InterPro)
Lac12g0743 1089 PRINTS P-type cation-transporting ATPase superfamily signature 613 623 - -
Lac12g0743 1089 PRINTS P-type cation-transporting ATPase superfamily signature 735 754 - -
Lac12g0743 1089 PRINTS P-type cation-transporting ATPase superfamily signature 153 167 - -
Lac12g0743 1089 PRINTS P-type cation-transporting ATPase superfamily signature 364 378 - -
Lac12g0743 1089 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 3 1008 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Lac12g0743 1089 FunFam Phospholipid-transporting ATPase 76 239 - -
Lac12g0743 1089 NCBIfam HAD-IC family P-type ATPase 702 819 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac12g0743 1089 SFLD Haloacid Dehalogenase 347 786 - -
Lac12g0743 1089 Pfam Phospholipid-translocating P-type ATPase C-terminal 763 1002 IPR032630 -
Lac12g0743 1089 ProSitePatterns E1-E2 ATPases phosphorylation site. 366 372 IPR018303 -
Lac12g0743 1089 Pfam Cation transport ATPase (P-type) 420 518 - -
Lac12g0743 1089 SUPERFAMILY Calcium ATPase, transmembrane domain M 16 1001 IPR023298 -
Lac12g0743 1089 SUPERFAMILY HAD-like 353 779 IPR036412 -
Lac12g0743 1089 MobiDBLite consensus disorder prediction 1038 1089 - -
Lac12g0743 1089 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 371 558 IPR023299 GO:0000166(InterPro)
Lac12g0743 1089 NCBIfam phospholipid-translocating P-type ATPase 408 1008 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Lac12g0743 1089 SFLD p-type atpase 347 786 IPR044492 -
Lac12g0743 1089 FunFam Phospholipid-transporting ATPase 587 774 - -
Lac12g0743 1089 Pfam Phospholipid-translocating ATPase N-terminal 6 71 IPR032631 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0743 Lac-Chr12:7764827 Lac1g1774 Lac-Chr1:39245090 2.60E-147 dispersed
Lac12g0743 Lac-Chr12:7764827 Lac13g0439 Lac-Chr13:3104800 6.50E-138 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0743 K01530 - csv:101210900 2065.43