Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0745 ATGGTTGCCAAAGAGAAATCCACCACCGCCAAGAAACTTCCCTCTCTCTGCAACGCCGACGGCAATGGCAAGGAACTCCATTTCCGAGGCGTTCGAAAGAGGCCCTGGGGCCGATACGCCGCCGAGATCCGAGATCCTGGTAAGAAAAGCCGCGTCTGGCTCGGCACCTTCGATACGGCCGAGGAGGCGGCGCGTGCTTACGACACCGCCGCGCGCCAGTTCCGCGGCGCCAAGGCCAAGACCAATTTCCCTCTGCCGGAAGACCTGATCGACGTTTCTCCTCACAAGATCAACCAAAGCCCTAGCCCTAGCAGCACCGTCGACTCCTCTTCCTCCTCCAGCCAAGAAAAAACTCCCTCGCCGGAGATCGTCCGCAGCTACGGCGTCGCTCGAACTTTCCCGTTCATTCAGCCGCAATTTTTGCATCAGGTCGGTTCCGCCGCCGCGGCCGGCGGCGGCGTTCGTCCAGTTTTGTTTATGGATGCTTTTGGTAGGCCGGAGTTCGTCGCTCACGGCTATCCCATACGGTTCGATCCGGCGACGGTGGATTTGACGGCGAGGCTGGCCGGCGGGATCCAGAGCGATTCGGACTCATCGTCGGTGGTTGACTTCCGGCCGGCGAAGGAAATTCTGAATCTCGATCTTAATCTCGCTCCGCCGGTGGACGCTTGA 672 60.27 MVAKEKSTTAKKLPSLCNADGNGKELHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDTAARQFRGAKAKTNFPLPEDLIDVSPHKINQSPSPSSTVDSSSSSSQEKTPSPEIVRSYGVARTFPFIQPQFLHQVGSAAAAGGGVRPVLFMDAFGRPEFVAHGYPIRFDPATVDLTARLAGGIQSDSDSSSVVDFRPAKEILNLDLNLAPPVDA 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7794324 7794995 - Lag0015117.1 Lac12g0745 589342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0745 223 SMART rav1_2 27 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g0745 223 MobiDBLite consensus disorder prediction 88 122 - -
Lac12g0745 223 MobiDBLite consensus disorder prediction 95 121 - -
Lac12g0745 223 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g0745 223 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g0745 223 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g0745 223 Pfam AP2 domain 27 76 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g0745 223 Gene3D AP2/ERF domain 27 85 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g0745 223 MobiDBLite consensus disorder prediction 1 23 - -
Lac12g0745 223 SUPERFAMILY DNA-binding domain 27 85 IPR016177 GO:0003677(InterPro)
Lac12g0745 223 CDD AP2 27 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g0745 223 FunFam Ethylene-responsive transcription factor 2 27 85 - -
Lac12g0745 223 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0745 Lac-Chr12:7794324 Lac1g3349 Lac-Chr1:53158700 1.10E-36 dispersed
Lac10g0904 Lac-Chr10:7208330 Lac12g0745 Lac-Chr12:7794324 6.50E-24 wgd
Lac12g0745 Lac-Chr12:7794324 Lac6g3016 Lac-Chr6:47767594 1.60E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23044 PF00847 AP2 1.40E-14 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0745 K09286 - csv:101210659 305.449