Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0751 ATGATTTCGAGATCGTACACAAATCTTTTAGATTTGGCTTCTGGAAATTTTCCAGCAATGGAAATGAAAAGGAAGCGGTTTCCTCGGGTCATGACTGTTCCGGGTAATGTGGCTGAGCTTGATGACGATCAAGCCTACAGTGTGACATCTGAAAACCCATCATCAATTTCCTCAGATCGGATGATAATTGTAGCAAACCAGCTTCCTTTAAGAGCAAAGCGAAGGGAAGATGATAATTCTTGGAGTTTCAGTTGGAACGAAGATTCTTTGCTTTTGCAGCTTAAAGATGGTTTACCAGAAGATATGGAGGTTCTTTATGTTGGTTCGCTGAAAGTTGATATCCAATCAGACGAGCAAGATGAGGTCTCCCAGATTTTGCTGGAGAAATTTAAGTGTATTCCTACATTTTTGCCTCCTCATATTTTGGAAAAGTTTTATGATGGTTTCTGCAAGAGGCATTTGTGGCCTCTTTTTCATTACATGCTGCCATATTCTGCTGATCAGAAGGGTCGATTTGATCGCTCCATGTGGGAAGCCTATGTATCAGCAAATAAGTTATTTTTCCAGAAAGTAGTTGAGGTTATCAACCCAGATGATGACTATATCTGGATCCATGATTACCATTTGATGGTATTGCCCACTTTCTTGAGGAGACGCTTTAACAGAGTTAAAATGGGATTTTTCCTTCATAGTCCATTTCCTTCATCTGAGATCTACCGCACCCTTCCTGTCAGAGAAGAGATTCTCAAGGCATTACTTAACTCTGACATCATTGGATTTCACACTTTTGATTATGCTCGTCATTTCCTTTCTTGTTGCAGCCGAATGTTGGGTTTGGAATACCAGTCTAAGAGAGGCTATCTTGGATTGGAATACTATGGCAGAACGATTGGGATAAAGATAATGCCTGTTGGTATTCATATGAGTCGGATTGAATCCGTGATGAAACTGGCAGACGAGGATGCTAAGACTAGGGAACTCACACAGAATTTTGAAGGGAAGACGGTATTGCTTGGTGTTGATGATTTGGACATTTTCAAAGGTATCAACTTGAAATTGTTAGCTATGGAACAGGTACTAAAGCAACATCCAAAATGGCAGGGAAAGGCTGTACTGATCCAAATTGTAAATCCTGCCAGAGGCAAGGGCAGAGATTTACAAGAAATAGAAGATGAAATAAAAGAAAGCTGCGCAAGGATCAACAAGGAATATGGGCATCCTGGCTATGAGCCAATAGTACTTCTCGATAGGCATGTGCCAATTACTGAGAGGGTTGCTTATTATAGCATTGCCGAGTGCGTAGTTGTCACTGCTGTTAGAGATGGAATGAATCTAACTCCTTATGAGTACGTTGTCTGTAGACAGGGAATATCCACCTCTCAAGAATGTTTAAACTTCAGTGGACCAAAAAAGAGCATGCTTGTCATATCCGAATTTATTGGATGTTCTCCATCACTAAGTGGAGCATTTCGTATCAACCCATGGAATGTTGAAAGGACAGCGGAGGCTTTGAATGAAGCAATCTCAATGTCTGATACGGAGAAACAATTGCGACATGAGAAGCATTACCGTTATGTTGCTACCCACGATGTGGCTTATTGGTCTCGTAGTTTCTTGCAAGATATGGAGAGAACTTGCTCAGATCATTTCAGGAGACGATGTTGGGGAATTGGTTTTAGTTTCGGTTTCAGGGTTGTAGCTCTTGATCCCAATTTCAGAAAACTTTCATTTGATGCCATTGTATCGACTTACAGTCGGGCTGAAAGTCGGGCCATTCTTTTGGACTATGATGGCACTATGATGCCTCAAAACTCCATAAATAAGTCACCGAGTGCACAGGTTATCTCTATCCTTAACACGCTTTGTGCTGATGCAAAAAATGTAGTTTTCATTGTGAGTGGACGAGGGAGGGACAGCTTAAGCAAGTGGTTTCGCCCATGCAAGAAGCTTGGAATTGCAGCAGAACATGGATACTTTTTGAGGCAGTCACAAAATGAGGAGTGGAAGATCTGCGGCCAAAGTTCTGATTTTGGATGGATGCAGATTGCCGAACCTGTGATGAAATTATATACCGAGGCGACTGATGGTTCTTCTATTGAAAGAAAGGAAAGTGCTTTGGTCTGGCAGTATCGAGATGCAGATCCTGGTTTTGGATCTTCCCAGGCAAAGGAGATGTTGGATCATTTAGAGAGTGTTTTGGCAAACGAACCTGTTGCAGTCAAGAGCGGCCAATTCATCGTAGAAGTGAAACCGCAGGGTGTTACCAAAGGCCTAGTGGCTGAAAAGATCTTTTCATCAATGGCGGAGGATGGAAAACTTGCCGACTTTGTGTTGTGTATTGGCGATGACAGATCTGATGAGGACATGTTTGAAATAATTGGCAATGCATTGTCCAGTAATATTCTTTCTCCAACGGCATCAGTTTTTGCCTGCACTGTCGGACAAAAGCCAAGCAAGGCCAAATATTATTTAGATGATACAGCTGAAGTGATAAGCATGCTAGAATACCTGGCTGAAGCTTCTAGCCCATTGCCATCCTCCGACGATGAAAAAGGTGAAGCCGAAAGTTGA 2571 42.05 MISRSYTNLLDLASGNFPAMEMKRKRFPRVMTVPGNVAELDDDQAYSVTSENPSSISSDRMIIVANQLPLRAKRREDDNSWSFSWNEDSLLLQLKDGLPEDMEVLYVGSLKVDIQSDEQDEVSQILLEKFKCIPTFLPPHILEKFYDGFCKRHLWPLFHYMLPYSADQKGRFDRSMWEAYVSANKLFFQKVVEVINPDDDYIWIHDYHLMVLPTFLRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTIGIKIMPVGIHMSRIESVMKLADEDAKTRELTQNFEGKTVLLGVDDLDIFKGINLKLLAMEQVLKQHPKWQGKAVLIQIVNPARGKGRDLQEIEDEIKESCARINKEYGHPGYEPIVLLDRHVPITERVAYYSIAECVVVTAVRDGMNLTPYEYVVCRQGISTSQECLNFSGPKKSMLVISEFIGCSPSLSGAFRINPWNVERTAEALNEAISMSDTEKQLRHEKHYRYVATHDVAYWSRSFLQDMERTCSDHFRRRCWGIGFSFGFRVVALDPNFRKLSFDAIVSTYSRAESRAILLDYDGTMMPQNSINKSPSAQVISILNTLCADAKNVVFIVSGRGRDSLSKWFRPCKKLGIAAEHGYFLRQSQNEEWKICGQSSDFGWMQIAEPVMKLYTEATDGSSIERKESALVWQYRDADPGFGSSQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQGVTKGLVAEKIFSSMAEDGKLADFVLCIGDDRSDEDMFEIIGNALSSNILSPTASVFACTVGQKPSKAKYYLDDTAEVISMLEYLAEASSPLPSSDDEKGEAES 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7898140 7901394 - Lag0015123.1 Lac12g0751 589348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0751 856 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 719 850 - -
Lac12g0751 856 CDD HAD_TPP 591 830 - -
Lac12g0751 856 CDD GT20_TPS 60 543 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Lac12g0751 856 Gene3D Glycogen Phosphorylase B; 53 313 - -
Lac12g0751 856 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 22 840 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Lac12g0751 856 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 546 - -
Lac12g0751 856 NCBIfam HAD-IIB family hydrolase 592 796 IPR006379 -
Lac12g0751 856 NCBIfam trehalose-phosphatase 588 838 IPR003337 GO:0005992(InterPro)
Lac12g0751 856 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 312 - -
Lac12g0751 856 Gene3D - 718 850 IPR023214 -
Lac12g0751 856 Gene3D - 589 690 IPR023214 -
Lac12g0751 856 Gene3D Glycogen Phosphorylase B; 314 527 - -
Lac12g0751 856 FunFam Alpha,alpha-trehalose-phosphate synthase 314 527 - -
Lac12g0751 856 SUPERFAMILY HAD-like 590 838 IPR036412 -
Lac12g0751 856 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 589 706 - -
Lac12g0751 856 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Lac12g0751 856 Pfam Trehalose-phosphatase 593 827 IPR003337 GO:0005992(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0751 Lac-Chr12:7898140 Lac13g0218 Lac-Chr13:1552545 0.00E+00 dispersed
Lac13g1298 Lac-Chr13:11938465 Lac12g0751 Lac-Chr12:7898140 0.00E+00 transposed
Lac5g0203 Lac-Chr5:1772768 Lac12g0751 Lac-Chr12:7898140 0.00E+00 transposed
Lac1g3435 Lac-Chr1:53783780 Lac12g0751 Lac-Chr12:7898140 0.00E+00 wgd
Lac10g1001 Lac-Chr10:8040725 Lac12g0751 Lac-Chr12:7898140 8.00E-121 wgd
Lac12g0751 Lac-Chr12:7898140 Lac9g2188 Lac-Chr9:41315927 1.90E-161 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0751 K16055 - csv:101209914 1686.39