Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0754 ATGGACCGCCGTGTTCGTACAAACCCATTTCTCTCCGAGCAAGAAGATCCTGAAGCCACGTCGGACGACGGCCTGCCGGAGTCCCCCTCCGACGGCAATGACTCCAAACCCGCCGCCGGCCCGCCGCCCAAAAAGAGTAGACGGGGAGTGCAGAAAAGAGTGGTGTCCGTACCGATCGGCGACGTGGAGGGATCTAAGAGCAAAGGGGAAGCATATCCACCGTCCGATTCGTGGGCATGGAGGAAATACGGCCAAAAGCCAATCAAGGGCTCTCCTTATCCCAGGGGATATTACCGATGTAGTAGCTCCAAGGGCTGCCCAGCAAGAAAGCAAGTAGAGAGAAGCCGTGTGGACCCCACCAAGCTCGTTATTACCTACGCTTTCGACCACAACCACCAACTCCCGGCCACCAAATCTCACCACCACCACCACCACCACAATTCCTCGCCGTCCTCCACCGCGAACGCCGCCGCAGTCGCTGCCCCCGACGACTCGTCACCGGGGAGCACTACGACGTCGTCCTCCACTTCCTCCGGCGACAACACGAACGCCACCCCCACGTCGCCGGCGGCGGCGAAGTTCGAGGAGGCGGCGGCGGTTTTCGCGAGTCAGCCGGAGCTGGAACTCGGCGGCGATTCGCTGATGATAAAACCGTGCATCGGCGATTTTGGATGGTTTGCTGACGTGGCGTACGATAGAATCCTGGAGGGCCCGATTTGCGGGGGAGGCGACATATTCGACGACGCCGATGTAATGGTTTTGTCGACAAGAGGAGATGACGAGGAGGAGTCGTTGTTTGCGGATCTTGGGGAATTACCCGAAGGCTCCGTGGTTTTCGGCCGGCGGCGAGCGGTCGAACCGGTCGGACCGAACCGGACGTGTGGCAGAGTTTTAGACTGCTAG 903 60.13 MDRRVRTNPFLSEQEDPEATSDDGLPESPSDGNDSKPAAGPPPKKSRRGVQKRVVSVPIGDVEGSKSKGEAYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTKLVITYAFDHNHQLPATKSHHHHHHHNSSPSSTANAAAVAAPDDSSPGSTTTSSSTSSGDNTNATPTSPAAAKFEEAAAVFASQPELELGGDSLMIKPCIGDFGWFADVAYDRILEGPICGGGDIFDDADVMVLSTRGDDEEESLFADLGELPEGSVVFGRRRAVEPVGPNRTCGRVLDC 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7911708 7913895 - Lag0015126.1 Lac12g0754 589351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0754 300 MobiDBLite consensus disorder prediction 136 188 - -
Lac12g0754 300 Pfam WRKY DNA -binding domain 76 133 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac12g0754 300 FunFam WRKY transcription factor 65 61 135 - -
Lac12g0754 300 SMART WRKY_cls 74 134 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac12g0754 300 MobiDBLite consensus disorder prediction 149 188 - -
Lac12g0754 300 SUPERFAMILY WRKY DNA-binding domain 70 135 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac12g0754 300 Gene3D WRKY domain 62 136 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac12g0754 300 MobiDBLite consensus disorder prediction 1 114 - -
Lac12g0754 300 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 28 200 IPR044810 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lac12g0754 300 ProSiteProfiles WRKY domain profile. 75 135 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0754 Lac-Chr12:7911708 Lac1g3622 Lac-Chr1:55313147 6.10E-30 dispersed
Lac11g0414 Lac-Chr11:4222273 Lac12g0754 Lac-Chr12:7911708 3.90E-25 transposed
Lac10g0979 Lac-Chr10:7845308 Lac12g0754 Lac-Chr12:7911708 3.80E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23045 PF03106 WRKY 1.20E-24 CL0274 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0754 - - - 0.0