Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac12g0754 | ATGGACCGCCGTGTTCGTACAAACCCATTTCTCTCCGAGCAAGAAGATCCTGAAGCCACGTCGGACGACGGCCTGCCGGAGTCCCCCTCCGACGGCAATGACTCCAAACCCGCCGCCGGCCCGCCGCCCAAAAAGAGTAGACGGGGAGTGCAGAAAAGAGTGGTGTCCGTACCGATCGGCGACGTGGAGGGATCTAAGAGCAAAGGGGAAGCATATCCACCGTCCGATTCGTGGGCATGGAGGAAATACGGCCAAAAGCCAATCAAGGGCTCTCCTTATCCCAGGGGATATTACCGATGTAGTAGCTCCAAGGGCTGCCCAGCAAGAAAGCAAGTAGAGAGAAGCCGTGTGGACCCCACCAAGCTCGTTATTACCTACGCTTTCGACCACAACCACCAACTCCCGGCCACCAAATCTCACCACCACCACCACCACCACAATTCCTCGCCGTCCTCCACCGCGAACGCCGCCGCAGTCGCTGCCCCCGACGACTCGTCACCGGGGAGCACTACGACGTCGTCCTCCACTTCCTCCGGCGACAACACGAACGCCACCCCCACGTCGCCGGCGGCGGCGAAGTTCGAGGAGGCGGCGGCGGTTTTCGCGAGTCAGCCGGAGCTGGAACTCGGCGGCGATTCGCTGATGATAAAACCGTGCATCGGCGATTTTGGATGGTTTGCTGACGTGGCGTACGATAGAATCCTGGAGGGCCCGATTTGCGGGGGAGGCGACATATTCGACGACGCCGATGTAATGGTTTTGTCGACAAGAGGAGATGACGAGGAGGAGTCGTTGTTTGCGGATCTTGGGGAATTACCCGAAGGCTCCGTGGTTTTCGGCCGGCGGCGAGCGGTCGAACCGGTCGGACCGAACCGGACGTGTGGCAGAGTTTTAGACTGCTAG | 903 | 60.13 | MDRRVRTNPFLSEQEDPEATSDDGLPESPSDGNDSKPAAGPPPKKSRRGVQKRVVSVPIGDVEGSKSKGEAYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTKLVITYAFDHNHQLPATKSHHHHHHHNSSPSSTANAAAVAAPDDSSPGSTTTSSSTSSGDNTNATPTSPAAAKFEEAAAVFASQPELELGGDSLMIKPCIGDFGWFADVAYDRILEGPICGGGDIFDDADVMVLSTRGDDEEESLFADLGELPEGSVVFGRRRAVEPVGPNRTCGRVLDC | 300 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 7911708 | 7913895 | - | Lag0015126.1 | Lac12g0754 | 589351 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac12g0754 | 300 | MobiDBLite | consensus disorder prediction | 136 | 188 | - | - | |
Lac12g0754 | 300 | Pfam | WRKY DNA -binding domain | 76 | 133 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac12g0754 | 300 | FunFam | WRKY transcription factor 65 | 61 | 135 | - | - | |
Lac12g0754 | 300 | SMART | WRKY_cls | 74 | 134 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac12g0754 | 300 | MobiDBLite | consensus disorder prediction | 149 | 188 | - | - | |
Lac12g0754 | 300 | SUPERFAMILY | WRKY DNA-binding domain | 70 | 135 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac12g0754 | 300 | Gene3D | WRKY domain | 62 | 136 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac12g0754 | 300 | MobiDBLite | consensus disorder prediction | 1 | 114 | - | - | |
Lac12g0754 | 300 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 28 | 200 | IPR044810 | GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Lac12g0754 | 300 | ProSiteProfiles | WRKY domain profile. | 75 | 135 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac12g0754 | Lac-Chr12:7911708 | Lac1g3622 | Lac-Chr1:55313147 | 6.10E-30 | dispersed | |
Lac11g0414 | Lac-Chr11:4222273 | Lac12g0754 | Lac-Chr12:7911708 | 3.90E-25 | transposed | |
Lac10g0979 | Lac-Chr10:7845308 | Lac12g0754 | Lac-Chr12:7911708 | 3.80E-42 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23045 | PF03106 | WRKY | 1.20E-24 | CL0274 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac12g0754 | - | - | - | 0.0 |