Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0797 ATGAAGTCCGGCGCCGGCGGCGAGATTGTTCCGGTCGAAGGCGGCCATATCCTCCGCTCCACCGGCCGGAAAGACCGTCACAGCAAGGTTTTCACGGCGAAAGGCCCTCGGGACCGCCGTGTGAGATTATCGGCTCACACCGCCATCCGGTTCTACGATGTGCAGGACCGGTTGGGCTACGATCGGCCGAGTAAAGCCGTCGATTGGCTAATCAAGAAGGCGAAATTCGCCATTGATAAGCTTCAAGAACTTCCCCCTTATTTCCCCATCGCCAATGGCTTCACTGACCCGAATCGGAAAACAGGGGAAACGGAAACGGAGGCGTCCGAGTTCGATTCCCAGTTGCAGTTGCAATCAGCAGCCGGAAACTTCGCTCCGCCGCTGGAATCGTTCTTTCCGACGAGCTCTGCTACTACTTCCATCAACTTTCAGGGATATCCGGTGGATTTGATTCTGAGACCCACTGACCCGGCTCGAGATCTTGCCTTATCTCTCCATAACTTTCACGATTCTCGTCTAATTCCGTCGGAGCAAGATGCGAGCCCTTCGCCGGAAAATACCCAACGGATCATCGCCGATTCGATTCCGTCTGGATACGAAGGATGCGACGCCGGGCTGTGGCTGCAGCAGCCGTTGTTGGGGCAAAATTCGGCGGCGGCGTTTTCCGTGAGAGCACTCCAGGTGCCGACTCGTGGTTGGAGTAATCAGAATCGACAGTCGGCGGTGCTCGGGGGCCGATTTGATGGGTCGTCGGAGTTCCGTACGCCGGCGCGGATTCCAGGTGATGGTGGGGAAAACGGCGTCGTTTCGGGGAGTCACTCGTCGTCTCCGAATTATCGTCGGTAG 846 57.21 MKSGAGGEIVPVEGGHILRSTGRKDRHSKVFTAKGPRDRRVRLSAHTAIRFYDVQDRLGYDRPSKAVDWLIKKAKFAIDKLQELPPYFPIANGFTDPNRKTGETETEASEFDSQLQLQSAAGNFAPPLESFFPTSSATTSINFQGYPVDLILRPTDPARDLALSLHNFHDSRLIPSEQDASPSPENTQRIIADSIPSGYEGCDAGLWLQQPLLGQNSAAAFSVRALQVPTRGWSNQNRQSAVLGGRFDGSSEFRTPARIPGDGGENGVVSGSHSSSPNYRR 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8321775 8322620 + Lag0015169.1 Lac12g0797 589394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0797 281 Pfam TCP family transcription factor 22 112 IPR017887 -
Lac12g0797 281 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 7 224 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
Lac12g0797 281 MobiDBLite consensus disorder prediction 235 281 - -
Lac12g0797 281 ProSiteProfiles TCP domain profile. 23 81 IPR017887 -
Lac12g0797 281 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0797 Lac-Chr12:8321775 Lac5g2433 Lac-Chr5:42955226 4.10E-44 dispersed
Lac10g0929 Lac-Chr10:7402897 Lac12g0797 Lac-Chr12:8321775 2.80E-16 wgd
Lac12g0797 Lac-Chr12:8321775 Lac9g2212 Lac-Chr9:41542148 1.80E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23048 PF03634 TCP 6.90E-31 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0797 - - - 0.0